These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 3527 fasta sequence [TGCTTGTGTTGGACGACATTTGGTTCGATAAATCCCAGGACGTTGAGGAATGGGACCTGCTACTTGCTCCCATACTATCTTCTCAGAATGGGGCAACCAAAGTTCTGGTAACTTCTCGATCTAAGACACTTCCACCTGCTCTTTTCTCTGAAGATGTCATTGATTTGGAAAATATGAAAGATACTGAGTTCCAGGCACTCTTCAAACACCATGCTTTCTCTGGAGCCACAATTCGAGACCTCCAGATGTGTGGCTGGTTCGAAGAGCATGCAGTGAAGATTACTGAAAGGCTTGGAAGATCTCCTTTGGCAGCAAAAGTTGTAGGTTCCAACTTGAAAAGGGTGATGAATATCGATGATTGGAAAGGTGCTCTCACTATAAAGATAGACAATTTAAGTGAACCTAAGAGAGCTCTGTTGTGGAGTTATCAGAAATTAGATCCATGTCTTCAGAGATGCTTTCTGTATTGCAGTTTATTTCCAAAAGGTTACAAATACATAATTGACGAGTTGGTTCACCTTTGGGTTGCAGAGGGATTTATTGATGCACGTGATACGAATAAAAGAATGGAAGATACCGGCATGGATTACTTCAAAGAGATGGTCTCTGGATCCTTTTTCCAACCATTTTCTGAAAGATTTGATAGTACGGTGTACATTATGCATGACCTCCTTCATGATTTGGCAGAGTCACTCTCTAGAGAAGACTGCTTCAGATTAGAAGATGACAAGGTGAGAGAAATACCATGCACTGTTCGGCATTTATCTGTTCGTGTTGAGAGTATTATACAACATAAGCCAAGTGTCTGCAAGCTACAACATTTGCGAACTCTTATCTGCATTGACCCACTAGTGGATGTTGGGAGCAATATTTTCGAGCAGGTAGTATTGAATCTGAAGAAGTTACAAGTACTTTATTTGTCGTTTTACAACACTAGAAAGTTGCCAGAATCAATCGGTCAGCTAAAGCATCTTCGGTATTTGAACATCAAGAAGACATTGATTTCTGAACTACCAAAATCATTATGCGATCTTTACCATTTAGAGTTACTTTATTTGCGTCCGAAATCGAGGTTACCTGACAAACTCTGCAATTTATGTAAGTTACGACATCTTCAAATGTACTCTGATGGATTGGAGCTGTCACGGATTCCTGACATAGGCCGGCTAACTTTGCTTCAACGTATTGATAGTTTTCACGTCCTAAAACAGAAGGGACATGAGTTGCGACAGCTCAGGAACATGAACGAAATTGGTGGGTATTTATCGCTCAGAAATCTTGAGAATGTGATTGGCAAGGATGAAGCTTTAGAGTCGAAGCTGTATCAGAAAAGTCGTCTTGAAGGATTGACGCTTGAGTGGAATGATGCGAATAACATGAATCCAGAGAATTGTTTACATGTTGAGATTCTTGAAGGCCTCGTGCCACCACCACAGTTGGAGCACTTATCAATTAGAGGTTACAAATCGACTACCTATCCAAGCTGGTTACTCGAGGGTTCCCAGCTTGAGAATCTAGAATCCTTTGCTCTTTATAACTGCAGCGCTTTAGAAAGGCTACCATCCAATACCAAGCTCTTTAGGCGTTGCCGTGAATTGAGCCTTAAGAATCTCCCGAATATGAAGGAACTATCATTTCTTCCAGCAGGTCTCACAACGTTGTCAATTCGTAGGTGCCCACTGCTTCTCTTCGTTACCAATGATGAACTGGAGTATCATGATCATAGTGAGCATATCCACTAGGACAGAGCAACTGGTTGCACAATTTGCTTTGGTTGGGGTGATGGGCCCATTTTTAGATGCACTGTCATCGGATCATTCATCTATGAAGCAGTTGGCAGCATTGATGGACTCTGATATATCAAAAAATCTTCAAACCATTGAACGCGCTCTAGAAAGAGAAGATGAAGTAGTGATGACCAAGGATGTCATCAAGGCATGGATGCGTTGCCACGAGCAGAGGATGAGACTCATTTATGCAAGGAGGATTGGGCTACCATTGGTCCCACCGTCAGGACTTAGTGATCTCTCCCTTAAATCATGCACAATTACAGATACAGCTCTATCCATATGCCTTGGTGGCCTAGCTTCTCTGAGATGTTTGTCCTTATCCAAGATCATGTCTTTAACTACTCTTCCGTCAGAAGAGGTCCTGAAAAAATTGACAAAGCTTGATTGTTTGATCATTGATGCCTGCTTGTTTCTCGGATCGTTGGGGGGCTTGCGAGCTGCTACTTCCCTTTCGCATTTAAGGTTGAACTCTTGCCCTGCTTTAGAGTTGGCACACGGTGCAGAATTCATGCCAGCGTCCCTTAAGAGACTCGCAATAAGTTGTTGTGTGCTTGCACCCGACTTGTTCTGTGGCCACTGGCCGCATCTGAAAGATATTTTCATACACGACTGCAGAAGCTCTGTGTCGTTGTTTGTTGGTGATCTTAGCTCCCTGAAAGAATTCACACTTTATCATTTGCCAGATTTATGTGTGCTTGAAGGCCTGTCTTCCCTTCAACTTCACAGCGTGTGTTTGGTAGATATCCCGAAGCTTACTGCTGAGTGTGTGTCAAAGTTTCGTGTCCAGGATTTACTGCATGTTAGCAGCTCTGCGGTGTTGAACAACATCATCTCGGCTGAAGGTATCACAGTTCAGCGTCTCTCATCCTTCAAAGGTGCAAGGAGCCATCCGTTTCATTTGAAGAAACTATAAATTCCTCATCTGTCAAGCAGCTGCGATTAGAAAGTTGTCAAATGAGTTCCCTGCAGGGAAATCTGAAGTGCCTCTCCAGACTGGAGGAACTTGACATCTTCAGTTGCCCCAATATATCATGTTTGCCAGATCTCCCATCCTCCCTTCAGCGCATATCCATAGTGGACTGCCCCAATATATCATCTTTGCCAGATCTCCCATCCTCCCTGCAGCACATATACATACGTGACTGTCCACTACTGAAGGAGAGCTGTAGAGTACCCGATGGGGAAAGCTGGCCAAAGATTGCGCATATTCGTTGGAAGCGTATTGACTGAATTATGCTTCAGATTCACAAGAACAAAGGAACAGAAAGTGCTGTTCCTTCGCCCCCTGCATTGCAGACCTCCAGAGTCTCACACAGCTGTTTGGCTATGAACGAGAGGGACCGGTTCGTATTGACTGATCGGTCTGAGCTTCTTCTTCTTATTCTTGTGTGGTTGCATTTCGCTGGCTGCTGGCTATGGTCTATATGCCTATGGACTATTACCGAGATGTATCTGTGTATTTGGATCTTGCTCTGTTATGTTTCCTGTTTGTTCTTTTGGACTGAATTGCTTGTAGTAGCTGTTATCTATGGTGTGCAACGTCTACTGTATTACTGCACCGGTGAAGCTTTGTATGGGAGTACCATGGTGCTTTTGAACTCAGGCTACTGTTATCCTCTCTTGGAGTGTTTCCTTTTGGACTTGGTTTCTATTGAGTATTGACTGTAAGCCTGTAACTATTATCTCTTGTATGATGAGATGCAAGATAAGGCAAACCTGCAATAGCTCTAAAAAAAA] [+] EMBL AK120289 [TGCTTGTGTTGGACGACATTTGGTTCGATAAATCCCAGGACGTTGAGGAATGGGACCTGCTACTTGCTCCCATACTATCTTCTCAGAATGGGGCAACCAAAGTTCTGGTAACTTCTCGATCTAAGACACTTCCACCTGCTCTTTTCTCTGAAGATGTCATTGATTTGGAAAATATGAAAGATACTGAGTTCCAGGCACTCTTCAAACACCATGCTTTCTCTGGAGCCACAATTCGAGACCTCCAGATGTGTGGCTGGTTCGAAGAGCATGCAGTGAAGATTACTGAAAGGCTTGGAAGATCTCCTTTGGCAGCAAAAGTTGTAGGTTCCAACTTGAAAAGGGTGATGAATATCGATGATTGGAAAGGTGCTCTCACTATAAAGATAGACAATTTAAGTGAACCTAAGAGAGCTCTGTTGTGGAGTTATCAGAAATTAGATCCATGTCTTCAGAGATGCTTTCTGTATTGCAGTTTATTTCCAAAAGGTTACAAATACATAATTGACGAGTTGGTTCACCTTTGGGTTGCAGAGGGATTTATTGATGCACGTGATACGAATAAAAGAATGGAAGATACCGGCATGGATTACTTCAAAGAGATGGTCTCTGGATCCTTTTTCCAACCATTTTCTGAAAGATTTGATAGTACGGTGTACATTATGCATGACCTCCTTCATGATTTGGCAGAGTCACTCTCTAGAGAAGACTGCTTCAGATTAGAAGATGACAAGGTGAGAGAAATACCATGCACTGTTCGGCATTTATCTGTTCGTGTTGAGAGTATTATACAACATAAGCCAAGTGTCTGCAAGCTACAACATTTGCGAACTCTTATCTGCATTGACCCACTAGTGGATGTTGGGAGCAATATTTTCGAGCAGGTAGTATTGAATCTGAAGAAGTTACAAGTACTTTATTTGTCGTTTTACAACACTAGAAAGTTGCCAGAATCAATCGGTCAGCTAAAGCATCTTCGGTATTTGAACATCAAGAAGACATTGATTTCTGAACTACCAAAATCATTATGCGATCTTTACCATTTAGAGTTACTTTATTTGCGTCCGAAATCGAGGTTACCTGACAAACTCTGCAATTTATGTAAGTTACGACATCTTCAAATGTACTCTGATGGATTGGAGCTGTCACGGATTCCTGACATAGGCCGGCTAACTTTGCTTCAACGTATTGATAGTTTTCACGTCCTAAAACAGAAGGGACATGAGTTGCGACAGCTCAGGAACATGAACGAAATTGGTGGGTATTTATCGCTCAGAAATCTTGAGAATGTGATTGGCAAGGATGAAGCTTTAGAGTCGAAGCTGTATCAGAAAAGTCGTCTTGAAGGATTGACGCTTGAGTGGAATGATGCGAATAACATGAATCCAGAGAATTGTTTACATGTTGAGATTCTTGAAGGCCTCGTGCCACCACCACAGTTGGAGCACTTATCAATTAGAGGTTACAAATCGACTACCTATCCAAGCTGGTTACTCGAGGGTTCCCAGCTTGAGAATCTAGAATCCTTTGCTCTTTATAACTGCAGCGCTTTAGAAAGGCTACCATCCAATACCAAGCTCTTTAGGCGTTGCCGTGAATTGAGCCTTAAGAATCTCCCGAATATGAAGGAACTATCATTTCTTCCAGCAGGTCTCACAACGTTGTCAATTCGTAGGTGCCCACTGCTTCTCTTCGTTACCAATGATGAACTGGAGTATCATGATCATAGTGAGCATATCCACTAGGACAGAGCAACTGGTTGCACAATTTGCTTTGGTTGGGGTGATGGGCCCATTTTTAGATGCACTGTCATCGGATCATTCATCTATGAAGCAGTTGGCAGCATTGATGGACTCTGATATATCAAAAAATCTTCAAACCATTGAACGCGCTCTAGAAAGAGAAGATGAAGTAGTGATGACCAAGGATGTCATCAAGGCATGGATGCGTTGCCACGAGCAGAGGATGAGACTCATTTATGCAAGGAGGATTGGGCTACCATTGGTCCCACCGTCAGGACTTAGTGATCTCTCCCTTAAATCATGCACAATTACAGATACAGCTCTATCCATATGCCTTGGTGGCCTAGCTTCTCTGAGATGTTTGTCCTTATCCAAGATCATGTCTTTAACTACTCTTCCGTCAGAAGAGGTCCTGAAAAAATTGACAAAGCTTGATTGTTTGATCATTGATGCCTGCTTGTTTCTCGGATCGTTGGGGGGCTTGCGAGCTGCTACTTCCCTTTCGCATTTAAGGTTGAACTCTTGCCCTGCTTTAGAGTTGGCACACGGTGCAGAATTCATGCCAGCGTCCCTTAAGAGACTCGCAATAAGTTGTTGTGTGCTTGCACCCGACTTGTTCTGTGGCCACTGGCCGCATCTGAAAGATATTTTCATACACGACTGCAGAAGCTCTGTGTCGTTGTTTGTTGGTGATCTTAGCTCCCTGAAAGAATTCACACTTTATCATTTGCCAGATTTATGTGTGCTTGAAGGCCTGTCTTCCCTTCAACTTCACAGCGTGTGTTTGGTAGATATCCCGAAGCTTACTGCTGAGTGTGTGTCAAAGTTTCGTGTCCAGGATTTACTGCATGTTAGCAGCTCTGCGGTGTTGAACAACATCATCTCGGCTGAAGGTATCACAGTTCAGCGTCTCTCATCCTTCAAAGGTGCAAGGAGCCATCCGTTTCATTTGAAGAAACTATAAATTCCTCATCTGTCAAGCAGCTGCGATTAGAAAGTTGTCAAATGAGTTCCCTGCAGGGAAATCTGAAGTGCCTCTCCAGACTGGAGGAACTTGACATCTTCAGTTGCCCCAATATATCATGTTTGCCAGATCTCCCATCCTCCCTTCAGCGCATATCCATAGTGGACTGCCCCAATATATCATCTTTGCCAGATCTCCCATCCTCCCTGCAGCACATATACATACGTGACTGTCCACTACTGAAGGAGAGCTGTAGAGTACCCGATGGGGAAAGCTGGCCAAAGATTGCGCATATTCGTTGGAAGCGTATTGACTGAATTATGCTTCAGATTCACAAGAACAAAGGAACAGAAAGTGCTGTTCCTTCGCCCCCTGCATTGCAGACCTCCAGAGTCTCACACAGCTGTTTGGCTGTGAACGAGAGGGACCGGTTCGTATTGACTGATCGGTCTGAGCTTCTTCTTCTTATTCTTGTGTGGTTGCATTTCGCTGGCTGCTGGCTATGGTCTATATGCCTATGGACTATTACCGAGATGTATCTGTGTATTTGGATCTTGCTCTGTTATGTTTCCTGTTTGTTCTTTTGGACTGAATTGCTTGTAGTAGCTGTTATCTATGGTGTGCAACGTCTACTGTATTACTGCACCGGTGAAGCTTTGTATGGGAGTACCATGGTGCTTTTGAACTCAGGCTACTGTTATCCTCTCTTGGAGTGTTTCCTTTTGGACTTGGTTTCTATTGAGTATTGACTGTAAGCCTGTAACTATTATCTCTTGTATGATGAGATGCAAGATAAGGCAAACCTGCAAT ] [+] EMBL AK067015 [TGCTTGTGTTGGACGACATTTGGTTCGATAAATCCCAGGACGTTGAGGAATGGGACCTGCTACTTGCTCCCATACTATCTTCTCAGAATGGGGCAACCAAAGTTCTGGTAACTTCTCGATCTAAGACACTTCCACCTGCTCTTTTCTCTGAAGATGTCATTGATTTGGAAAATATGAAAGATACTGAGTTCCAGGCACTCTTCAAACACCATGCTTTCTCTGGAGCCACAATTCGAGACCTCCAGATGTGTGGCTGGTTCGAAGAGCATGCAGTGAAGATTACTGAAAGGCTTGGAAGATCTCCTTTGGCAGCAAAAGTTGTAGGTTCCAACTTGAAAAGGGTGATGAGTATCGATGATTGGAAAGGTGCTCTCACTATAAAGATAGACAATTTAAGTGAACCTAAGAGAGCTCTGTTGTGGAGTTATCAGAAATTAGATCCATGTCTTCAGAGATGCTTTCTGTATTGCAGTTTATTTCCAAAAGGTTACAAATACATAATTGACGAGTTGGTTCACCTTTGGGTTGCAGAGGGATTTATTGATGCACGTGATACGAATAAAAGAATGGAAGATACCGGCATGGATTACTTCAAAGAGATGGTCTCTGGATCCTTTTTCCAACCATTTTCTGAAAGATTTGATAGTACGGTGTACATTATGCATGACCTCCTTCATGATTTGGCAGAGTCACTCTCTAGAGAAGACTGCTTCAGATTAGAAGATGACAAGGTGAGAGAAATACCATGCACTGTTCGGCATTTATCTGTTCGTGTTGAGAGTATTATACAACATAAGCCAAGTGTCTGCAAGCTACAACATTTGCGAACTCTTATCTGCATTGACCCACTAGTGGATGTTGGGAGCAATATTTTCGAGCAGGTAGTATTGAATCTGAAGAAGTTACAAGTACTTTATTTGTCGTTTTACAACACTAGAAAGTTGCCAGAATCAATCGGTCAGCTAAAGCATCTTCGGTATTTGAACATCAAGAAGACATTGATTTCTGAACTACCAAAATCATTATGCGATCTTTACCATTTAGAGTTACTTTATTTGCGTCCGAAATCGAGGTTACCTGACAAACTCTGCAATTTATGTAAGTTACGACATCTTCAAATGTACTCTGATGGATTGGAGCTGTCACGGATTCCTGACATAGGCCGGCTAACTTTGCTTCAACGTATTGATAGTTTTCACGTCCTAAAACAGAAGGGACATGAGTTGCGACAGCTCAGGAACATGAACGAAATTGGTGGGTATTTATCGCTCAGAAATCTTGAGAATGTGATTGGCAAGGATGAAGCTTTAGAGTCGAAGCTGTATCAGAAAAGTCGTCTTGAAGGATTGACGCTTGAGTGGAATGATGCGAATAACATGAATCCAGAGAATTGTTTACATGTTCAGATTCTTGAAGGCCTCGTGCCACCACCACGGTTGGAGCACTTATCAATTAGGGGTTACAAATCGACTACCTATCCAAGCTGGTTACTCGAGGGTTCCCAGCTTGAGAATCTAGAATCCTTTGCTCTTTATAACTGCAGCGCTTTAGAAAGGCTACCATCCAATACCAAGCTCTTTAGGCGTTGCCGTGAATTGAGCCTTAAGAATCTCCCGAATATGAAGGAACTATCATTTCTTCCAGCAGGTCTCACAACGTTGTCAATTCGTAGGTGCCCACTGCTTCTCTTCGTTACCAATGATGAACTGGAGTATCATGATCATAGTGAGCATATCCACTAGGACAGAGCAACTGGTTGCACAATTTGCTTTGGTTGGGGTGATGGGCCCATTTTTAGATGCACTGTCATCGGATCATTCATCTATGAAGCAGTTGGCAGCATTGATGGACTCTGATATATCAAAAAATCTTCAAACCATTGAACGCGCTCTAGAAAGAGAAGATGAAGTAGTGATGACCAAGGATGTCATCAAGGCATGGATGCGTTGCCACGAGCAGAGGATGAGACTCATTTATGCAAGGAGGATTGGGCTACCATTGGTCCCACCGTCAGGACTTAGTGATCTCTCCCTTAAATCATGCACAATTACAGATACAGCTCTATCCATATGCCTTGGTGGCCTAGCTTCTCTGAGATGTTTGTCCTTATCCAAGATCATGTCTTTAACTACTCTTCCGTCAGAAGAGGTCCTGAAAAAATTGACAAAGCTTGATTGTTTGATCATTGATGCCTGCTTGTTTCTCGGATCGTTGGGGGGCTTGCGAGCTGCTACTTCCCTTTCGCATTTAAGGTTGAACTCTTGCCCTGCTTTAGAGTTGGCACACGGTGCAGAATTCATGCCAGCGTCCCTTAAGAGACTCGCAATAAGTTGTTGTGTGCTTGCACCCGACTTGTTCTGTGGCCACTGGCCGCATCTGAAAGATATTTTCATACACGACTGCAGAAGCTCTGTGTCGTTGTTTGTTGGTGATCTTAGCTCCCTGAAAGAATTCACACTTTATCATTTGCCAGATTTATGTGTGCTTGAAGGCCTGTCTTCCCTTCAACTTCACAGCGTGTGTTTGGTAGATATCCCGAAGCTTACTGCTGAGTGTGTGTCAAAGTTTCGTGTCCAGGATTTACTGCATGTTAGCAGCTCTGCGGTGTTGAACAACATCATCTCGGCTGAAGGTATCACAGTTCAGCGTCTCTCATCCTTCAAAGGTGCAAGGAGCCATCCGTTTCATTTGAAGAAACTATAAATTCCTCATCTGTCAAGCAGCTGCGATTAGAAAGTTGTCAAATGAGTTCCCTGCAGGGAAATCTGAAGTGCCTCTCCAGACTGGAGGAACTTGACATCTTCAGTTGCCCCAATATATCATGTTTGCCAGATCTCCCATCCTCCCTTCAGCGCATATCCATAGTGGACTGCCCCAATATATCATCTTTGCCAGATCTCCCATCCTCCCTGCAGCACATATACATACGTGACTGTCCACTACTGAAGGAGAGCTGTAGAGTACCCGATGGGGAAAGCTGGCCAAAGATTGCGCATATTCGTTGGAAGCGTATTGACTGAATTATGCTTCAGATTCACAAGAACAAAGGAACAGAAAGTGCTGTTCCTTCGCCCCCTGCATTGCAGACCTCCAGAGTCTCACACAGCTGTTTGGCTATGAACGAGAGGGACCGGTTCGTATTGACTGATCGGTCTGAGCTTCTTCTTCTTATTCTTGTGTGGTTGCATTTCGCTGGCTGCTGGCTATGGTCTATATGCCTATGGACTATTACCGAGATGTATCTGTGTATTTGGATCTTGCTCTGTTATGTTTCCTGTTTGTTCTTTTGGACTGAATTGCTTGTAGTAGCTGTTATCTATGGTGTGCAACGTCTACTGTATTACTGCACCGGTGAAGCTTTGTATGGGAGTACCATGGTGCTTTTGAACTCAGGCTACTGTTATCCTCTCTTGGAGTGTTTCCTTTTGGACTTGGTTTCTATTGAGTATTGACTGTAAGCCTGTAACTATTATCTCTTGTATGATGAGATGCAAGATAAGGCAAACC ] [-] EMBL CF326176 [ TACATACGTGACTGTCCACTACTGAAGGAGAGCTGTAGAGTACCCGATGGGGAAAGCTGGCCAAAGATTGCGCATATTCGTTGGAAGCGTATTGACTGAATTATGCTTCAGATTCACAAGAACAAAGGAACAGAAAGTGCTGTTCCTTCGCCCCCTGCATTGCAGACCTCCAGAGTCTCACACAGCTGTTTGGCTATGAACGAGAGGGACCGGTTCGTATTGACTGATCGGTCTGAGCTTCTTCTTCTTATTCTTGTGTGGTTGCATTTCGCTGGCTGCTGGCTATGGTCTATATGCCTATGGACTATTACCGAGATGTATCTGTGTATTTGGATCTTGCTCTGTTATGTTTCCTGTTTGTTCTTTTGGACTGAATTGCTTGTAGTAGCTGTTATCTATGGTGTGCAACGTCTACTGTATTACTGCACCGGTGAAGCTTTGTATGGGAGTACCATGGTGCTTTTGAACTCAGGCTACTGTTATCCTCTCTTGGAGTGTTTCCTTTTGGACTTGGTTTCTATTGAGTATTGACTGTAAGCCTGTAACTATTATCTCTTGTATGATGAGATGCAAGATAAGGCAAACCTGCAATAGCTCTAAAAAAAA] [-] EMBL CF324882 [ GCATATTCGTTGGAAGCGTATTGACTGAATTATGCTTCAGATTCACAAGAACAAAGGAACAGAAAGTGCTGTTCCTTCGCCCCCTGCATTGCAGACCTCCAGAGTCTCACACAGCTGTTTGGCTATGAACGAGAGGGACCGGTTCGTATTGACTGATCGGTCTGAGCTTCTTCTTCTTATTCTTGTGTGGTTGCATTTCGCTGGCTGCTGGCTATGGTCTATATGCCTATGGACTATTACCGAGATGTATCTGTGTATTTGGATCTTGCTCTGTTATGTTTCCTGTTTGTTCTTTTGGACTGAATTGCTTGTAGTAGCTGTTATCTATGGTGTGCAACGTCTACTGTATTACTGCACCGGTGAAGCTTTGTATGGGAGTACCATGGTGCTTTTGAACTCAGGCTACTGTTATCCTCTCTTGGAGTGTTTCCTTTTGGACTTGGTTTCTATTGAGTATTGACTGTAAGCCTGTAACTATTATCTCTTGTATGATGAGATGCAAGATAAGGCAAACCTGCAATAGCTCTAAAAAAAA] consensusID : consensus_8049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1129 fasta sequence [TGAACCTAAGAGAGCTCTGTTGTGGAGTTATCAGAAATTAGATCCATGTCTTCAGAGATGCTTTCTGTATTGCAGTTTATTTCCAAAAGGTTACAAATACATAATTGACGAGTTGGTTCACCTTTGGGTTGCAGAGGGATTTATTGATGCACGTGATACGAATAAAAGAATGGAAGATACCGGCATGGATTACTTCAAAGAGATGGTCTCTGGATCCTTTTTCCAACCATTTTCTGAAAGATTTGATAGTACGGTGTACATTATGCATGACCTCCTTCATGATTTGGCAGAGTCACTCTCTAGAGAAGACTGCTTCAGATTAGAAGATGACAAGGTGAGAGAAATACCATGCACTGTTCGGCATTTATCTGTTCGTGTTGAGAGTATTATACAACATAAGCCAAGTGTCTGCAAGCTACAACATTTGCGAACTCTTATCTGCATTGACCCACTAGTGCCAGATCTCCCATCCTCCCTTCAGCGCATATCCATAGTGGACTGCCCCAATATATCATCTTTGCCAGATCTCCCATCCTCCCTGCAGCACATATACATACGTGACTGTCCACTACTGAAGGAGAGCTGTAGAGTACCCGATGGGGAAAGCTGGCCAAAGATTGCGCATATTCGTTGGAAGCGTATTGACTGAATTATGCTTCAGATTCACAAGAACAAAGGAACAGAAAGTGCTGTTCCTTCGCCCCCTGCATTGCAGACCTCCAGAGTCTCACACAGCTGTTTGGCTATGAACGAGAGGGACCGGTTCGTATTGACTGATCGGTCTGAGCTTCTTCTTCTTATTCTTGTGTGGTTGCATTTCGCTGGCTGCTGGCTATGGTCTATATGCCTATGGACTATTACCGAGATGTATCTGTGTATTTGGATCTTGCTCTGTTATGTTTCCTGTGTGTTCTTTTGGACTGAATTGCTTGTAGTAGCTGTTATCTATGGTGTGCAACGTCTACTGTATTACTGCACCGGTGAAGCTTTGTATGGGAGTACCATGGTGCTTTTGAACTCAGGCTACTGTTATCCTCTCTTGGAGTGTTTCCTTTTGGACTTGGTTTCTATTGAGTATTGACTGTAAGCCTGTAACTATTATCTCTTGTATGATGAGATGCAAGATAAG] [+] EMBL AK062028 [TGAACCTAAGAGAGCTCTGTTGTGGAGTTATCAGAAATTAGATCCATGTCTTCAGAGATGCTTTCTGTATTGCAGTTTATTTCCAAAAGGTTACAAATACATAATTGACGAGTTGGTTCACCTTTGGGTTGCAGAGGGATTTATTGATGCACGTGATACGAATAAAAGAATGGAAGATACCGGCATGGATTACTTCAAAGAGATGGTCTCTGGATCCTTTTTCCAACCATTTTCTGAAAGATTTGATAGTACGGTGTACATTATGCATGACCTCCTTCATGATTTGGCAGAGTCACTCTCTAGAGAAGACTGCTTCAGATTAGAAGATGACAAGGTGAGAGAAATACCATGCACTGTTCGGCATTTATCTGTTCGTGTTGAGAGTATTATACAACATAAGCCAAGTGTCTGCAAGCTACAACATTTGCGAACTCTTATCTGCATTGACCCACTAGTGCCAGATCTCCCATCCTCCCTTCAGCGCATATCCATAGTGGACTGCCCCAATATATCATCTTTGCCAGATCTCCCATCCTCCCTGCAGCACATATACATACGTGACTGTCCACTACTGAAGGAGAGCTGTAGAGTACCCGATGGGGAAAGCTGGCCAAAGATTGCGCATATTCGTTGGAAGCGTATTGACTGAATTATGCTTCAGATTCACAAGAACAAAGGAACAGAAAGTGCTGTTCCTTCGCCCCCTGCATTGCAGACCTCCAGAGTCTCACACAGCTGTTTGGCTATGAACGAGAGGGACCGGTTCGTATTGACTGATCGGTCTGAGCTTCTTCTTCTTATTCTTGTGTGGTTGCATTTCGCTGGCTGCTGGCTATGGTCTATATGCCTATGGACTATTACCGAGATGTATCTGTGTATTTGGATCTTGCTCTGTTATGTTTCCTGTGTGTTCTTTTGGACTGAATTGCTTGTAGTAGCTGTTATCTATGGTGTGCAACGTCTACTGTATTACTGCACCGGTGAAGCTTTGTATGGGAGTACCATGGTGCTTTTGAACTCAGGCTACTGTTATCCTCTCTTGGAGTGTTTCCTTTTGGACTTGGTTTCTATTGAGTATTGACTGTAAGCCTGTAACTATTATCTCTTGTATGATGAGATGCAAGATAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8049#0 TGCTTGTGTTGGACGACATTTGGTTCGATAAATCCCAGGACGTTGAGGAATGGGACCTGC 60 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TACTTGCTCCCATACTATCTTCTCAGAATGGGGCAACCAAAGTTCTGGTAACTTCTCGAT 120 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 CTAAGACACTTCCACCTGCTCTTTTCTCTGAAGATGTCATTGATTTGGAAAATATGAAAG 180 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 ATACTGAGTTCCAGGCACTCTTCAAACACCATGCTTTCTCTGGAGCCACAATTCGAGACC 240 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TCCAGATGTGTGGCTGGTTCGAAGAGCATGCAGTGAAGATTACTGAAAGGCTTGGAAGAT 300 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 CTCCTTTGGCAGCAAAAGTTGTAGGTTCCAACTTGAAAAGGGTGATGAATATCGATGATT 360 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 GGAAAGGTGCTCTCACTATAAAGATAGACAATTTAAGTGAACCTAAGAGAGCTCTGTTGT 420 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 GGAGTTATCAGAAATTAGATCCATGTCTTCAGAGATGCTTTCTGTATTGCAGTTTATTTC 480 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 CAAAAGGTTACAAATACATAATTGACGAGTTGGTTCACCTTTGGGTTGCAGAGGGATTTA 540 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TTGATGCACGTGATACGAATAAAAGAATGGAAGATACCGGCATGGATTACTTCAAAGAGA 600 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TGGTCTCTGGATCCTTTTTCCAACCATTTTCTGAAAGATTTGATAGTACGGTGTACATTA 660 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TGCATGACCTCCTTCATGATTTGGCAGAGTCACTCTCTAGAGAAGACTGCTTCAGATTAG 720 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 AAGATGACAAGGTGAGAGAAATACCATGCACTGTTCGGCATTTATCTGTTCGTGTTGAGA 780 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 GTATTATACAACATAAGCCAAGTGTCTGCAAGCTACAACATTTGCGAACTCTTATCTGCA 840 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TTGACCCACTAGTGGATGTTGGGAGCAATATTTTCGAGCAGGTAGTATTGAATCTGAAGA 900 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 AGTTACAAGTACTTTATTTGTCGTTTTACAACACTAGAAAGTTGCCAGAATCAATCGGTC 960 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 AGCTAAAGCATCTTCGGTATTTGAACATCAAGAAGACATTGATTTCTGAACTACCAAAAT 1020 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 CATTATGCGATCTTTACCATTTAGAGTTACTTTATTTGCGTCCGAAATCGAGGTTACCTG 1080 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 ACAAACTCTGCAATTTATGTAAGTTACGACATCTTCAAATGTACTCTGATGGATTGGAGC 1140 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TGTCACGGATTCCTGACATAGGCCGGCTAACTTTGCTTCAACGTATTGATAGTTTTCACG 1200 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TCCTAAAACAGAAGGGACATGAGTTGCGACAGCTCAGGAACATGAACGAAATTGGTGGGT 1260 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 ATTTATCGCTCAGAAATCTTGAGAATGTGATTGGCAAGGATGAAGCTTTAGAGTCGAAGC 1320 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TGTATCAGAAAAGTCGTCTTGAAGGATTGACGCTTGAGTGGAATGATGCGAATAACATGA 1380 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 ATCCAGAGAATTGTTTACATGTTGAGATTCTTGAAGGCCTCGTGCCACCACCACAGTTGG 1440 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 AGCACTTATCAATTAGAGGTTACAAATCGACTACCTATCCAAGCTGGTTACTCGAGGGTT 1500 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 CCCAGCTTGAGAATCTAGAATCCTTTGCTCTTTATAACTGCAGCGCTTTAGAAAGGCTAC 1560 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 CATCCAATACCAAGCTCTTTAGGCGTTGCCGTGAATTGAGCCTTAAGAATCTCCCGAATA 1620 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TGAAGGAACTATCATTTCTTCCAGCAGGTCTCACAACGTTGTCAATTCGTAGGTGCCCAC 1680 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TGCTTCTCTTCGTTACCAATGATGAACTGGAGTATCATGATCATAGTGAGCATATCCACT 1740 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 AGGACAGAGCAACTGGTTGCACAATTTGCTTTGGTTGGGGTGATGGGCCCATTTTTAGAT 1800 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 GCACTGTCATCGGATCATTCATCTATGAAGCAGTTGGCAGCATTGATGGACTCTGATATA 1860 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TCAAAAAATCTTCAAACCATTGAACGCGCTCTAGAAAGAGAAGATGAAGTAGTGATGACC 1920 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 AAGGATGTCATCAAGGCATGGATGCGTTGCCACGAGCAGAGGATGAGACTCATTTATGCA 1980 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 AGGAGGATTGGGCTACCATTGGTCCCACCGTCAGGACTTAGTGATCTCTCCCTTAAATCA 2040 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TGCACAATTACAGATACAGCTCTATCCATATGCCTTGGTGGCCTAGCTTCTCTGAGATGT 2100 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TTGTCCTTATCCAAGATCATGTCTTTAACTACTCTTCCGTCAGAAGAGGTCCTGAAAAAA 2160 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TTGACAAAGCTTGATTGTTTGATCATTGATGCCTGCTTGTTTCTCGGATCGTTGGGGGGC 2220 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 TTGCGAGCTGCTACTTCCCTTTCGCATTTAAGGTTGAACTCTTGCCCTGCTTTAGAGTTG 2280 consensus_8049#1 ------------------------------------------------------------ consensus_8049#0 GCACACGGTGCAGAATTCATGCCAGCGTCCCTTAAGAGACTCGCAATAAGTTGTTGTGTG 2340 consensus_8049#1 --------------------------------------------------------TGAA 4 ** consensus_8049#0 CTTGCACCCGACTTGTTCTGTGGCCACTGGCCGCATCTGAAAGATATTTTCATACACGAC 2400 consensus_8049#1 CCTAAGAGAGCTCTGTTGTGGAGTTATCAG--AAATTAGATCCATGTCTTCAGAGATGCT 62 * * * **** ** * * * ** ** ** * **** * * * consensus_8049#0 TGCAGAAGCTCTGTGTCGTTGTTTGTTGGTGATCTTAGCTCCCTGAAAGAATTCACACTT 2460 consensus_8049#1 T--------TCTGTATTGCAGTTTATTTCCAAA---AGGTTAC-----AAATACATAATT 106 * ***** * * **** ** * ** * * *** ** * ** consensus_8049#0 TATCATTTGCCAGATTTATGTGTGCTTGAAGGCCTGTCTTCCCTTCAACTTCACAGCGTG 2520 consensus_8049#1 GACGAGTTGGTTCACCTTTGGGTTGCAGAGGGATTTATTGATGCACGTGATACGAATAAA 166 * * *** * * ** ** ** ** * * * * * consensus_8049#0 TGTTTGGTAGATATCC-CGAAGCTTACTGCTGAGTGT--GTGTCAAAGTTTCGTGTCCAG 2577 consensus_8049#1 AGAATGGAAGATACCGGCATGGATTACTTCAAAGAGATGGTCTCTGGATCCTTTTTCCAA 226 * *** ***** * * * ***** * ** * ** ** * * **** consensus_8049#0 G-ATTTACTGCATGTTAGCAGCTCTGCGGTGTTGAACA-ACATCATCTCGGCTGAAGGTA 2635 consensus_8049#1 CCATTTTCTGAAAGATT-TGATAGTACGGTGTACATTATGCATGACCTC---------CT 276 **** *** * * * * ****** * * *** * *** consensus_8049#0 TCACAGTTCAGCGTCTCTCATCCTTCAAAGGTGCAAGGAGCCATCCGTTTCATTTGAAGA 2695 consensus_8049#1 TCATGATTTGGCAGAG-TCACTCTCTAGAG-----AAGACTGCTTCAGATTAGAAGATGA 330 *** ** ** *** ** * ** * ** * * * * ** ** consensus_8049#0 AACTATAAATTCCTCATCTGTCAAGCAGCTGCGATTAGAAAGTTGTCAAATGAGTTCCCT 2755 consensus_8049#1 CAAGGTGAGAGAAATACCATGCACTGTTCGGCATTTATCTGTTCGTGTTGAGAGTATTAT 390 * * * * * ** * ** *** * ** **** * consensus_8049#0 GCAGGGAAATCTGAAGTGCCTCTCCAGACTGGAGGAACTTGACATCTTCAGTTGCCCCAA 2815 consensus_8049#1 ACAACATAAGCC-AAGTG--TCTGCAAGCTACAACATTTGCGAACTCTTATCTGCATTGA 447 ** ** * ***** *** ** ** * * * * * * *** * consensus_8049#0 TATATCATGTTTGCCAGATCTCCCATCCTCCCTTCAGCGCATATCCATAGTGGACTGCCC 2875 consensus_8049#1 CCCACTAG---TGCCAGATCTCCCATCCTCCCTTCAGCGCATATCCATAGTGGACTGCCC 504 * * ************************************************* consensus_8049#0 CAATATATCATCTTTGCCAGATCTCCCATCCTCCCTGCAGCACATATACATACGTGACTG 2935 consensus_8049#1 CAATATATCATCTTTGCCAGATCTCCCATCCTCCCTGCAGCACATATACATACGTGACTG 564 ************************************************************ consensus_8049#0 TCCACTACTGAAGGAGAGCTGTAGAGTACCCGATGGGGAAAGCTGGCCAAAGATTGCGCA 2995 consensus_8049#1 TCCACTACTGAAGGAGAGCTGTAGAGTACCCGATGGGGAAAGCTGGCCAAAGATTGCGCA 624 ************************************************************ consensus_8049#0 TATTCGTTGGAAGCGTATTGACTGAATTATGCTTCAGATTCACAAGAACAAAGGAACAGA 3055 consensus_8049#1 TATTCGTTGGAAGCGTATTGACTGAATTATGCTTCAGATTCACAAGAACAAAGGAACAGA 684 ************************************************************ consensus_8049#0 AAGTGCTGTTCCTTCGCCCCCTGCATTGCAGACCTCCAGAGTCTCACACAGCTGTTTGGC 3115 consensus_8049#1 AAGTGCTGTTCCTTCGCCCCCTGCATTGCAGACCTCCAGAGTCTCACACAGCTGTTTGGC 744 ************************************************************ consensus_8049#0 TATGAACGAGAGGGACCGGTTCGTATTGACTGATCGGTCTGAGCTTCTTCTTCTTATTCT 3175 consensus_8049#1 TATGAACGAGAGGGACCGGTTCGTATTGACTGATCGGTCTGAGCTTCTTCTTCTTATTCT 804 ************************************************************ consensus_8049#0 TGTGTGGTTGCATTTCGCTGGCTGCTGGCTATGGTCTATATGCCTATGGACTATTACCGA 3235 consensus_8049#1 TGTGTGGTTGCATTTCGCTGGCTGCTGGCTATGGTCTATATGCCTATGGACTATTACCGA 864 ************************************************************ consensus_8049#0 GATGTATCTGTGTATTTGGATCTTGCTCTGTTATGTTTCCTGTTTGTTCTTTTGGACTGA 3295 consensus_8049#1 GATGTATCTGTGTATTTGGATCTTGCTCTGTTATGTTTCCTGTGTGTTCTTTTGGACTGA 924 ******************************************* **************** consensus_8049#0 ATTGCTTGTAGTAGCTGTTATCTATGGTGTGCAACGTCTACTGTATTACTGCACCGGTGA 3355 consensus_8049#1 ATTGCTTGTAGTAGCTGTTATCTATGGTGTGCAACGTCTACTGTATTACTGCACCGGTGA 984 ************************************************************ consensus_8049#0 AGCTTTGTATGGGAGTACCATGGTGCTTTTGAACTCAGGCTACTGTTATCCTCTCTTGGA 3415 consensus_8049#1 AGCTTTGTATGGGAGTACCATGGTGCTTTTGAACTCAGGCTACTGTTATCCTCTCTTGGA 1044 ************************************************************ consensus_8049#0 GTGTTTCCTTTTGGACTTGGTTTCTATTGAGTATTGACTGTAAGCCTGTAACTATTATCT 3475 consensus_8049#1 GTGTTTCCTTTTGGACTTGGTTTCTATTGAGTATTGACTGTAAGCCTGTAACTATTATCT 1104 ************************************************************ consensus_8049#0 CTTGTATGATGAGATGCAAGATAAGGCAAACCTGCAATAGCTCTAAAAAAAA 3527 consensus_8049#1 CTTGTATGATGAGATGCAAGATAAG--------------------------- 1129 ************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||