cluster # 805

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Oryza sativa
cluster # 805 cluster # 805 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_805#0 length = 622 sequences # 1

consensus_805#1 length = 474 sequences # 1

consensusID : consensus_805#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [GGCGCTTCGCTCGCCGCGCCCGACGGCAACCGGTACCACGCGCTCCAGTGGCCGCGCTCAACACTACCCCAACGTCGCTCTCTACATCATCGAGCATGGACGCCACGTCAACGCTGGGGACAATGCGCAGCAGACGGCCCAGCACTGGGCGGCGGTGCGCAGAGCCATAGCTGCGGCGAAGCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGGGTTTAGGAATGAGCTGCCAGATCCAAGCTTTAAGCTAAAATGGTTGCCGCTGAACAAGGATAAGGACCAGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGGCTCGTGTTAGTGTAGTTGAACTTCCAGGCCGTCATCGCCTTTTGGTACTTCAGAACTTGGTGGTGTATGTGGCTGCTATTGTATGGTGTTTGTGGCCTGCTAGAACTTGGTGCTAGCTGCTGGTTGCTTGCAGGTTGGCGCTTTTGTATGGAANCATGTTGGAAACTAAATTCTGGAACTTGCTTTTGTATGGCTGGAAATTAATTATGGCTGGAATGTGATTATAATATAATTATGCAAATGGTTGTGGTTTAAAAAAAAA]

[+] EMBL BQ907888             [GGCGCTTCGCTCGCCGCGCCCGACGGCAACCGGTACCACGCGCTCCAGTGGCCGCGCTCAACACTACCCCAACGTCGCTCTCTACATCATCGAGCATGGACGCCACGTCAACGCTGGGGACAATGCGCAGCAGACGGCCCAGCACTGGGCGGCGGTGCGCAGAGCCATAGCTGCGGCGAAGCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGGGTTTAGGAATGAGCTGCCAGATCCAAGCTTTAAGCTAAAATGGTTGCCGCTGAACAAGGATAAGGACCAGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGGCTCGTGTTAGTGTAGTTGAACTTCCAGGCCGTCATCGCCTTTTGGTACTTCAGAACTTGGTGGTGTATGTGGCTGCTATTGTATGGTGTTTGTGGCCTGCTAGAACTTGGTGCTAGCTGCTGGTTGCTTGCAGGTTGGCGCTTTTGTATGGAANCATGTTGGAAACTAAATTCTGGAACTTGCTTTTGTATGGCTGGAAATTAATTATGGCTGGAATGTGATTATAATATAATTATGCAAATGGTTGTGGTTTAAAAAAAAA]




>consensus_805#0
GGCGCTTCGCTCGCCGCGCCCGACGGCAACCGGTACCACGCGCTCCAGTGGCCGCGCTCA
ACACTACCCCAACGTCGCTCTCTACATCATCGAGCATGGACGCCACGTCAACGCTGGGGA
CAATGCGCAGCAGACGGCCCAGCACTGGGCGGCGGTGCGCAGAGCCATAGCTGCGGCGAA
GCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGG
GTTTAGGAATGAGCTGCCAGATCCAAGCTTTAAGCTAAAATGGTTGCCGCTGAACAAGGA
TAAGGACCAGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGG
CTCGTGTTAGTGTAGTTGAACTTCCAGGCCGTCATCGCCTTTTGGTACTTCAGAACTTGG
TGGTGTATGTGGCTGCTATTGTATGGTGTTTGTGGCCTGCTAGAACTTGGTGCTAGCTGC
TGGTTGCTTGCAGGTTGGCGCTTTTGTATGGAANCATGTTGGAAACTAAATTCTGGAACT
TGCTTTTGTATGGCTGGAAATTAATTATGGCTGGAATGTGATTATAATATAATTATGCAA
ATGGTTGTGGTTTAAAAAAAAA

consensusID : consensus_805#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 474
fasta sequence

                              [CAATTACCCCAAACGGTCGCTCTTACATCATCGAGGTCCACTGCTCTACTGCATGGACCCACGTCAACCTGGGGACAATGCGCACAGACGGCCCAGCACTGGGCGCGGTGCGCAGAGCCATAGCTGCGGCGAAGCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGGGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGGCTCGTGTTAGTGTAGTTGAACTTCCAGCCGTCATCCCCTTTTGGTACTTCCGAACTTGGTGGTGTATGTGCCTGCTATTGTATGGTGTTTGTGGCTGCTAGAACTTGGTGCTACTGCTGTTGCTTCAGGTTGGCGCTTTTGTATGGAACATGTTGGAAACTAAATTCTGGAACTTGCTTTTGTATGGGCTGGAAAATTAATTATGGCTGGAATGTGATTTAAAAAAAAAA]

[+] EMBL BI812419             [CAATTACCCCAAACGGTCGCTCTTACATCATCGAGGTCCACTGCTCTACTGCATGGACCCACGTCAACCTGGGGACAATGCGCACAGACGGCCCAGCACTGGGCGCGGTGCGCAGAGCCATAGCTGCGGCGAAGCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGGGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGGCTCGTGTTAGTGTAGTTGAACTTCCAGCCGTCATCCCCTTTTGGTACTTCCGAACTTGGTGGTGTATGTGCCTGCTATTGTATGGTGTTTGTGGCTGCTAGAACTTGGTGCTACTGCTGTTGCTTCAGGTTGGCGCTTTTGTATGGAACATGTTGGAAACTAAATTCTGGAACTTGCTTTTGTATGGGCTGGAAAATTAATTATGGCTGGAATGTGATTTAAAAAAAAAA]




>consensus_805#1
CAATTACCCCAAACGGTCGCTCTTACATCATCGAGGTCCACTGCTCTACTGCATGGACCC
ACGTCAACCTGGGGACAATGCGCACAGACGGCCCAGCACTGGGCGCGGTGCGCAGAGCCA
TAGCTGCGGCGAAGCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGG
TCACTGTATTCGGGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAG
GTGGCTCGTGTTAGTGTAGTTGAACTTCCAGCCGTCATCCCCTTTTGGTACTTCCGAACT
TGGTGGTGTATGTGCCTGCTATTGTATGGTGTTTGTGGCTGCTAGAACTTGGTGCTACTG
CTGTTGCTTCAGGTTGGCGCTTTTGTATGGAACATGTTGGAAACTAAATTCTGGAACTTG
CTTTTGTATGGGCTGGAAAATTAATTATGGCTGGAATGTGATTTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_805#0      GGCGCTTCGCTCGCCGCGCCCGACGGCAACCGGTACCACGCGCTCCAGTGGCCGCGCTCA 60
consensus_805#1      -----------------------------------CAATTACCCCAAACGGTCGCTCT-- 23
                                                        * *    * * *  ** *** **  

consensus_805#0      ACACTACCCCAACGTCGCTCTCTACATCATCGAGCATGGACGCCACGTCAACGCTGGGGA 120
consensus_805#1      ----TACATCATCGAGGTCCACTGCTCTACT--GCATGGAC-CCACGTCAAC-CTGGGGA 75
                         ***  ** **  *  * ** *   *    ******** ********** *******

consensus_805#0      CAATGCGCAGCAGACGGCCCAGCACTGGGCGGCGGTGCGCAGAGCCATAGCTGCGGCGAA 180
consensus_805#1      CAATGCGCA-CAGACGGCCCAGCACTGGGCG-CGGTGCGCAGAGCCATAGCTGCGGCGAA 133
                     ********* ********************* ****************************

consensus_805#0      GCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGG 240
consensus_805#1      GCAGGAGATGAACGGAGGAGGGGAGGTAGAATATTGGGAGGAGTGGGTCACTGTATTCGG 193
                     ************************************************************

consensus_805#0      GTTTAGGAATGAGCTGCCAGATCCAAGCTTTAAGCTAAAATGGTTGCCGCTGAACAAGGA 300
consensus_805#1      G----------------------------------------------------------- 194
                     *                                                           

consensus_805#0      TAAGGACCAGAATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGG 360
consensus_805#1      ----------AATGAGGTGGCTGAGCTTGGAATTTGATGGCTGAGCTTGGAATGAGGTGG 244
                               **************************************************

consensus_805#0      CTCGTGTTAGTGTAGTTGAACTTCCAGGCCGTCATCGCCTTTTGGTACTTCAGAACTTGG 420
consensus_805#1      CTCGTGTTAGTGTAGTTGAACTTCCAG-CCGTCATCCCCTTTTGGTACTTCCGAACTTGG 303
                     *************************** ******** ************** ********

consensus_805#0      TGGTGTATGTGGCTGCTATTGTATGGTGTTTGTGGCCTGCTAGAACTTGGTGCTAGCTGC 480
consensus_805#1      TGGTGTATGTGCCTGCTATTGTATGGTGTTTGTGGC-TGCTAGAACTTGGTGCTA-CTGC 361
                     *********** ************************ ****************** ****

consensus_805#0      TGGTTGCTTGCAGGTTGGCGCTTTTGTATGGAANCATGTTGGAAACTAAATTCTGGAACT 540
consensus_805#1      TG-TTGCTT-CAGGTTGGCGCTTTTGTATGGAAC-ATGTTGGAAACTAAATTCTGGAACT 418
                     ** ****** ***********************  *************************

consensus_805#0      TGCTTTTGTATGG-CTGGAAA-TTAATTATGGCTGGAATGTGATTATAATATAATTATGC 598
consensus_805#1      TGCTTTTGTATGGGCTGGAAAATTAATTATGGCTGGAATGTGATT-TAAAAAAAAAA--- 474
                     ************* ******* *********************** *** * **  *   

consensus_805#0      AAATGGTTGTGGTTTAAAAAAAAA 622
consensus_805#1      ------------------------