These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8061#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1099 fasta sequence [GTTGAGTCGAGTCTGAGCCACCGCCGGAGGAGAGGAGGGGGGCCGAGCGGCGGAGGCGCGCAAGGGTTTGGGAGCCGCCGCCGGCGACCTTGGCCGGAGCGCAAAAGACTGAGGAGGCGTGGTCGGGGCTTGCCTGCTGCCGGCGGCCGGCGACCGGCGACCAACGGCCAGGACAGCTTGTGCTTATACTGTCCTGATGGAAACCGACAGAAGCCAGCCTGCTCCAATTGACCCAAGAAGAGCTCGCTTTCCTTGTTGTATAGTATGGACACCATTACCGTTAATCTCATGGTTGATCCCCTTTATCGGTCACATTGGCATCTGCAGAGAAGATGGTGTAATTTTGGATTTTGCTGGGCCCAATTTTGTATCAGTTGATAACTTCGCGTTTGGAGCAGTTGCACGATATATTCAAGTAAACAGTGATGAGTGCTATAAGCTTCTTGAACCTGAAGGAGCATCAACATGGGATGACGCGCTGAGGAAAGGCGTGCAGGAGTTCCAGCACAGGGGCTACAGCCTGTTCACCTGCAACTGCCACTCCTTCGTCGTGAACAATCTGAACCGTCTGTTCTACTCCGGCCATGACAAATGGAATGTGGTCAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGCACAGCGTCGGTGGTGAAGACTTTTTTCCCATTTGCACTGGTGATCACCATCGGCACTCTCCTTGGCGGCGCGACATTCCTGATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCACCTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGTTTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGTTTATTTTTGACTGGAGAGATCTATGAACTGGAATATAATTTGTAGCTTGATGAACTGGTCATCGATCCAGACGGTTAATTCTTGACTGGAGAGACCTATGAACTGCAATAGAATTTGTGGTTTGATGAACTGCTCATCAATCCAGATGGTTGCGGCAAAAAAAAAAAAAAAAAAAAAACCTCGTGCCGAATTCGGCACG] [+] EMBL AK071709 [GTTGAGTCGAGTCTGAGCCACCGCCGGAGGAGAGGAGGGGGGCCGAGCGGCGGAGGCGCGCAAGGGTTTGGGAGCCGCCGCCGGCGACCTTGGCCGGAGCGCAAAAGACTGAGGAGGCGTGGTCGGGGCTTGCCTGCTGCCGGCGGCCGGCGACCGGCGACCAACGGCCAGGACAGCTTGTGCTTATACTGTCCTGATGGAAACCGACAGAAGCCAGCCTGCTCCAATTGACCCAAGAAGAGCTCGCTTTCCTTGTTGTATAGTATGGACACCATTACCGTTAATCTCATGGTTGATCCCCTTTATCGGTCACATTGGCATCTGCAGAGAAGATGGTGTAATTTTGGATTTTGCTGGGCCCAATTTTGTATCAGTTGATAACTTCGCGTTTGGAGCAGTTGCACGATATATTCAAGTAAACAGTGATGAGTGCTATAAGCTTCTTGAACCTGAAGGAGCATCAACATGGGATGACGCGCTGAGGAAAGGCGTGCAGGAGTTCCAGCACAGGGGCTACAGCCTGTTCACCTGCAACTGCCACTCCTTCGTCGTGAACAACCTGAACCGTCTGTTCTACTCCGGCCATGACAAATGGAATGTGGTCAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGCACAGCGTCGGTGGTGAAGACTTTTTTCCCATTTGCACTGGTGATCACCATCGGCACTCTCCTTGGCGGCGCGACATTCCTGATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCACCTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGTTTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGTTTATTTTTGACTGGAGAGATCTATGAACTGGAATATAATTTGTAGCTTGATGAACTGGTCATCGAT ] [+] EMBL CB001026 [ TTCACCTGCAACTGCCACTCCTTCGTCGTGAACAATCTGAACCGTCTGTTCTACTCCGGCCATGACAAATGGAATGTGGTCAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGCACAGCGTCGGTGGTGAAGACTTTTTTCCCATTTGCACTGGTGATCACCATCGGCACTCTCCTTGGCGGCGCGACATTCCTGATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCACCTACTGCATC ] [-] EMBL BE230687 [ tggtgcCGTG ACAATTTGAACCGTTTGTTTTACTCCGCCCATG CAAATGAAATGTGGTCAGCCTCGCTGCTGT ATG TCTT CGGGGTCGCTGGGTGAG TCAGCGTCGGTGGTGAAGACTTTTTTCCCATTTGCACTGGTGATCACCATCGGCACTCTCCTTGGCGGCGCGACATTCCTGATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCACCTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGTTTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGTTTATTTTTGACTGGAGAGATCTATGAACTGGAATATAATTTGTAGCTTGATGAACTGGTCATCGATCCAGACGGTTAATTCTTGACTGGAGAGACCTATGAACTGCAATAGAATTTGTGGTTTGATGAACTGCTCATCAATCCAGATGGTTGCGGCAAAAAAAAAAAA ] [-] EMBL BE229893 [ ATGCCAAAT GAATG GG CAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGTACAGCGTCGGTGGTGAAGACTTTTTTCCCATTTGCACTGGTGATCACCATCGGCACTCTCCTTGGCGGCGCGACATTCCTGATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCACCTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGTTTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGTTTATTTTTGACTGGAGAGATCTATGAACTGGAATATAATTTGTAGCTTGATGAACTGGTCATCGATCCAGACGGTTAATTCTTGACTGGAGAGACCTATGAACTGCAATAGAATTTGTGGTTTGATGAACTGCTCATCAATCCAGATGGTTGCGGCAAAAAAAAAAAAAAAAAAAAAACCTCGTGCCGAATTCGGCACG] consensusID : consensus_8061#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [CTGGGCCCAATTTTGTATCAGTTGATAACTTCGCGTTTGGAGCAGTTGCCCGATATATTCAAGTAAACAGTGATGAGTGCTATAAGCTTCCTGAACCTGAAGGAGCATCAACATGGGATGACGCGCTGAGGAAAGGCGTGCAGGAGTTCCAGCACAGGGGCTACAGCCTGTTCACCTGCAACTGTCACTCCTTTGTCGTGAACAATTTGAACCGTCTGTTTTACTCCGGCCATGACAAATGGAATGTGGTCAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGTACAGCGTCGGTGGTGAAGACTTTTTTCCCATTTGCCCTGGTAATCACCATCGGCACTCTCCTTGGCGGCGCGACATTCCTAATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCACCTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGTTTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGTTTATTTTTGACTGGAGAGATCTATGAACTAGAATATAATTTGTAGCTTGATGAACTGGTCATCGATCCAGACGGTTAATTTTTGACTGGAGAGACCTATGAACTGCAATAGAATTTGTGGTTTGATGAAAAAAAAAAAAAAAA] [-] EMBL CA759829 [CTGGGCCCAATTTTGTATCAGTTGATAACTTCGCGTTTGGAGCAGTTGCCCGATATATTCAAGTAAACAGTGATGAGTGCTATAAGCTTCCTGAACCTGAAGGAGCATCAACATGGGATGACGCGCTGAGGAAAGGCGTGCAGGAGTTCCAGCACAGGGGCTACAGCCTGTTCACCTGCAACTGTCACTCCTTTGTCGTGAACAATTTGAACCGTCTGTTTTACTCCGGCCATGACAAATGGAATGTGGTCAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGTACAGCGTCGGTGGTGAAGACTTTTTTCCCATTTGCCCTGGTAATCACCATCGGCACTCTCCTTGGCGGCGCGACATTCCTAATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCACCTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGTTTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGTTTATTTTTGACTGGAGAGATCTATGAACTAGAATATAATTTGTAGCTTGATGAACTGGTCATCGATCCAGACGGTTAATTTTTGACTGGAGAGACCTATGAACTGCAATAGAATTTGTGGTTTGATGAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8061#0 GTTGAGTCGAGTCTGAGCCACCGCCGGAGGAGAGGAGGGGGGCCGAGCGGCGGAGGCGCG 60 consensus_8061#1 ------------------------------------------------------------ consensus_8061#0 CAAGGGTTTGGGAGCCGCCGCCGGCGACCTTGGCCGGAGCGCAAAAGACTGAGGAGGCGT 120 consensus_8061#1 ------------------------------------------------------------ consensus_8061#0 GGTCGGGGCTTGCCTGCTGCCGGCGGCCGGCGACCGGCGACCAACGGCCAGGACAGCTTG 180 consensus_8061#1 ------------------------------------------------------------ consensus_8061#0 TGCTTATACTGTCCTGATGGAAACCGACAGAAGCCAGCCTGCTCCAATTGACCCAAGAAG 240 consensus_8061#1 ------------------------------------------------------------ consensus_8061#0 AGCTCGCTTTCCTTGTTGTATAGTATGGACACCATTACCGTTAATCTCATGGTTGATCCC 300 consensus_8061#1 ------------------------------------------------------------ consensus_8061#0 CTTTATCGGTCACATTGGCATCTGCAGAGAAGATGGTGTAATTTTGGATTTTGCTGGGCC 360 consensus_8061#1 -----------------------------------------------------CTGGGCC 7 ******* consensus_8061#0 CAATTTTGTATCAGTTGATAACTTCGCGTTTGGAGCAGTTGCACGATATATTCAAGTAAA 420 consensus_8061#1 CAATTTTGTATCAGTTGATAACTTCGCGTTTGGAGCAGTTGCCCGATATATTCAAGTAAA 67 ****************************************** ***************** consensus_8061#0 CAGTGATGAGTGCTATAAGCTTCTTGAACCTGAAGGAGCATCAACATGGGATGACGCGCT 480 consensus_8061#1 CAGTGATGAGTGCTATAAGCTTCCTGAACCTGAAGGAGCATCAACATGGGATGACGCGCT 127 *********************** ************************************ consensus_8061#0 GAGGAAAGGCGTGCAGGAGTTCCAGCACAGGGGCTACAGCCTGTTCACCTGCAACTGCCA 540 consensus_8061#1 GAGGAAAGGCGTGCAGGAGTTCCAGCACAGGGGCTACAGCCTGTTCACCTGCAACTGTCA 187 ********************************************************* ** consensus_8061#0 CTCCTTCGTCGTGAACAATCTGAACCGTCTGTTCTACTCCGGCCATGACAAATGGAATGT 600 consensus_8061#1 CTCCTTTGTCGTGAACAATTTGAACCGTCTGTTTTACTCCGGCCATGACAAATGGAATGT 247 ****** ************ ************* ************************** consensus_8061#0 GGTCAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGCACAGCGTCGGTGGT 660 consensus_8061#1 GGTCAGCCTCGCTGCTGTGATGTTCTTACGGGGTCGCTGGGTGAGTACAGCGTCGGTGGT 307 ********************************************* ************** consensus_8061#0 GAAGACTTTTTTCCCATTTGCACTGGTGATCACCATCGGCACTCTCCTTGGCGGCGCGAC 720 consensus_8061#1 GAAGACTTTTTTCCCATTTGCCCTGGTAATCACCATCGGCACTCTCCTTGGCGGCGCGAC 367 ********************* ***** ******************************** consensus_8061#0 ATTCCTGATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCAC 780 consensus_8061#1 ATTCCTAATCGGCTTGCTTGCTTTCGCTGCGGTGATGACTGGCTGGTTCCTTGTGGGCAC 427 ****** ***************************************************** consensus_8061#0 CTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGT 840 consensus_8061#1 CTACTGCATCAAGAGCCTTGTAGAGTTGTAGCTGGAGTAGTATATTGGATTGTACTTGGT 487 ************************************************************ consensus_8061#0 TTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGT 900 consensus_8061#1 TTTGGGTCTCCTTGTGATCAAAGGGTGCATACTTCTAATTTTTATAGTTGCTTGTAAGGT 547 ************************************************************ consensus_8061#0 TTATTTTTGACTGGAGAGATCTATGAACTGGAATATAATTTGTAGCTTGATGAACTGGTC 960 consensus_8061#1 TTATTTTTGACTGGAGAGATCTATGAACTAGAATATAATTTGTAGCTTGATGAACTGGTC 607 ***************************** ****************************** consensus_8061#0 ATCGATCCAGACGGTTAATTCTTGACTGGAGAGACCTATGAACTGCAATAGAATTTGTGG 1020 consensus_8061#1 ATCGATCCAGACGGTTAATTTTTGACTGGAGAGACCTATGAACTGCAATAGAATTTGTGG 667 ******************** *************************************** consensus_8061#0 TTTGATGAACTGCTCATCAATCCAGATGGTTGCGGCAAAAAAAAAAAAAAAAAAAAAACC 1080 consensus_8061#1 TTTGATGAAAAAAAAAAAAAAAA------------------------------------- 690 ********* * ** consensus_8061#0 TCGTGCCGAATTCGGCACG 1099 consensus_8061#1 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||