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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8078#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2101 fasta sequence
[AGCGCACAGGCCACGCGTGCGCGTCCACCGAAACAGCGGCGGCGACGACGAGGCGATCGATTCCTGGACACTCGCGCCACGCCACCCCACTGTCCCTGCACGCTGCAGCTACCCCTACTCTACCACTGCCCTCTCCGGCAGGGAAGCGAGGAAGAGGCACGCACCACGAAGTCGCCACCTCGATTTTTCCGGCGAACGACGCAAGAATAACACCCCCCCCCCCTTACCTACGGGGATAGTGATACGATGGCGATGGCGGCCGCTTCCGCCTCCGCCATGGCGAGGCGGGCCGCTTCGTGGCCACGGCTCCTCCTCCTCTCCCGCGCCTTCGCCGCCGCCGCCGCTGAGCCGAAGCGGGTGCTCGTGCCGGTCGCGGACGGCACGGAGCCGGTGGAGGCGGCCGCCACCGCCGACGTGCTCAACCGCGCCGGCGCGCGGGTCACCGTCGCCACGGCTGACCCCGCGGGCGACGACCGTGGCCTCCTGGTGGAGGCCGCGTTCGGGGTCAAGCTCGTCGCCGACGGCCGCGTCGCCGACCTGGAAGGCGAGGCCTTTGACCTCATCGCCCTACCCGGAGGAATGCCGGGATCAGCTAACCTCAGAGATTGCAAGGTGCTGGAGAAGATGGTCAAGAAGCAGGCAGAGCAGGGTGGCCTCTACGCCGCCATCTGCGCCACGCCGGCGGTGACGCTGGCTCACTGGGGCTTGCTCAAAGGCTTAAAGGCGACTTGCTATCCATCATTCATGGAGAAGTTCACCGCTGAAATTATCCCTGTGAACTCTAGGGTGGTGGTAGATAGAAATGCAGTGACCAGCCAAGGGCCAGCAACAGCAATTGAATATGCTCTCGCTTTGGTGGAGCAACTGTACGGCAAAGAGAAGTCGGAGGAGGTTGCAGGACCCTTGTATGTTCGTCCTCAACCTGGGGTTGACTATGTCATAGATGAGTTCAATTCAGTTGAGTGGAAATGCAGTGGTACACCTCAGGTTCTTGTGCCAGTTGCTAATGGTTCGGAGGAAATGGAAGCTCTTAATTTAATAGATATCTTGCGTAGAGCAGGAGCAAATGTTACCGTTGCATCAGTTGAGGATAAGTTGCAAGTTGTGACCCGCCGCCACAAATTTAACCTGATAGCTGATATTATGGTGGAAGAAGCTGCCAAAAGGGAATTCGATCTGATTGTCATGCCGGGTGGTCTGCCAGGTGCTCAAAAGCTTTCTAGTACAAAGGTACTTGTAGATTTACTAAAGAAACAGGCAGAATCTAATAAACCATATGGTGCAATATGCGCTTCTCCTGCTTATGTTCTCGAGCCCCATGGTTTACTGAAGGGGAAGAAGGCAACATCATTTCCACCAATGGCACACCTGCTTACTGATCAGAGTGCATGTGACAGTAGGGTGGTTGTTGATGGTAACCTTATCACTAGCAAAGCCCCAGGCTCCGCGACAGAGTTCGCGCTAGCCATTGTTGAGAAGCTGTTTGGTCGAGAGAAAGCGGTCAGTATAGCGAAGGAGTTGATTTTTATGTGATTATACACTTGGGCATTTATGCATCAGGTGCCTGTCACCTGTGAGTGATGCTTCTGTGAATAACTACTTATGCTGCTTTCCTAGGAATGCATAATATAAGCCTATAGCAGCATGTGGCAATCCATGTGAATGAGGAATAAATGTACATTATGAGTATCATGTGTAAAGAGTCGTCGTTGTTAGATTTCGGTGAGTTTACGCTGTTTTACAGTTACCTGGATAGATCTTGACTCTTGTTTTTGAGGCCCAAGGCTTGCAGAAAAATGGCATGGCAATGTTTAGTTTTCAAAGGCACAGGATTTGAATCCTGTCATGTGGAACTAATACGATTTGAGATAGAGGGACTGCATTGAGAACCTTTTTTATGGATAGAAAGAAAGGAACCTGTTGAGACTTTGGAATCTGTTGCATCAATCTTTTCGAATGTTTAGCAAAATACTTTCTATTATGATTGTCACTTTCACATCATCATCAGGAGGACTAATGTGTGATTGAAACGACATGAGTGTAATGCACTAGGAAAGTGCATCTTTATGTGTCTTGAAAACGAAAATTGTGCCATGACATA]
[+] EMBL AK100463 [AGCGCACAGGCCACGCGTGCGCGTCCACCGAAACAGCGGCGGCGACGACGAGGCGATCGATTCCTGGACACTCGCGCCACGCCACCCCACTGTCCCTGCACGCTGCAGCTACCCCTACTCTACCACTGCCCTCTCCGGCAGGGAAGCGAGGAAGAGGCACGCACCACGAAGTCGCCACCTCGATTTTTCCGGCGAACGACGCAAGAATAACACCCCCCCCCCCTTACCTACGGGGATAGTGATACGATGGCGATGGCGGCCGCTTCCGCCTCCGCCATGGCGAGGCGGGCCGCTTCGTGGCCACGGCTCCTCCTCCTCTCCCGCGCCTTCGCCGCCGCCGCCGCTGAGCCGAAGCGGGTGCTCGTGCCGGTCGCGGACGGCACGGAGCCGGTGGAGGCGGCCGCCACCGCCGACGTGCTCAACCGCGCCGGCGCGCGGGTCACCGTCGCCACGGCTGACCCCGCGGGCGACGACCGTGGCCTCCTGGTGGAGGCCGCGTTCGGGGTCAAGCTCGTCGCCGACGGCCGCGTCGCCGACCTGGAAGGCGAGGCCTTTGACCTCATCGCCCTACCCGGAGGAATGCCGGGATCAGCTAACCTCAGAGATTGCAAGGTGCTGGAGAAGATGGTCAAGAAGCAGGCAGAGCAGGGTGGCCTCTACGCCGCCATCTGCGCCACGCCGGCGGTGACGCTGGCTCACTGGGGCTTGCTCAAAGGCTTAAAGGCGACTTGCTATCCATCATTCATGGAGAAGTTCACCGCTGAAATTATCCCTGTGAACTCTAGGGTGGTGGTAGATAGAAATGCAGTGACCAGCCAAGGGCCAGCAACAGCAATTGAATATGCTCTCGCTTTGGTGGAGCAACTGTACGGCAAAGAGAAGTCGGAGGAGGTTGCAGGACCCTTGTATGTTCGTCCTCAACCTGGGGTTGACTATGTCATAGATGAGTTCAATTCAGTTGAGTGGAAATGCAGTGGTACACCTCAGGTTCTTGTGCCAGTTGCTAATGGTTCGGAGGAAATGGAAGCTCTTAATTTAATAGATATCTTGCGTAGAGCAGGAGCAAATGTTACCGTTGCATCAGTTGAGGATAAGTTGCAAGTTGTGACCCGCCGCCACAAATTTAACCTGATAGCTGATATTATGGTGGAAGAAGCTGCCAAAAGGGAATTCGATCTGATTGTCATGCCGGGTGGTCTGCCAGGTGCTCAAAAGCTTTCTAGTACAAAGGTACTTGTAGATTTACTAAAGAAACAGGCAGAATCTAATAAACCATATGGTGCAATATGCGCTTCTCCTGCTTATGTTCTCGAGCCCCATGGTTTACTGAAGGGGAAGAAGGCAACATCATTTCCACCAATGGCACACCTGCTTACTGATCAGAGTGCATGTGACAGTAGGGTGGTTGTTGATGGTAACCTTATCACTAGCAAAGCCCCAGGCTCCGCGACAGAGTTCGCGCTAGCCATTGTTGAGAAGCTGTTTGGTCGAGAGAAAGCGGTCAGTATAGCGAAGGAGTTGATTTTTATGTGATTATACACTTGGGCATTTATGCATCAGGTGCCTGTCACCTGTGAGTGATGCTTCTGTGAATAACTACTTATGCTGCTTTCCTAGGAATGCATAATATAAGCCTATAGCAGCATGTGGCAATCCATGTGAATGAGGAATAAATGTACATTATGAGTATCATGTGTAAAGAGT ]
[+] EMBL CB659032 [ GCCGCCTTGCCGAAGCGGGTGCTCGTGCCGGTCGCGGACGGCACGGAGCCGGTGGAGGCGGCCGCCACCGCCGACGTGCTCAACCGCGCCGGCGCGCGGGTCACCGTCTCCACGGCTGACCCCGCGGGCGACGACCGTGGCCTCCTGGTGGAGGCCGCGTTCGGGGTCAAGCTCGTCGCCGACGGCCGCGTCGCCGACCTGGAAGGCGAGGCCTTTGACCTCATCGCCCTACCCGGAGGAATGCCGGGATCAGCTAACCTCATAGATTGCAAGGTGCTGGATAAGATGGTCAATAAGCAGGCAGAGCAGGGTGGCCTCTACTCCGCCATCTGCGCCACGCCGGCGGTGACTCTGGCTCACTGGGGCTTGCTCAAAGGCTTAAAGGCGACTTGCTATCCATCATTCATGGAGAAGTTCACCGCTGAAATTATCCCTGTGAACTCTATGGTGGTGGTATATACAAATGCAGTGACCAGCCTAGGGCCAGCAACAGCAATTGAATATGCTCTCGCTTTGGTGGAGCAACTGTACGGCAAAGAGAAGTCGGAGGAGGTTGCACGAC ]
[-] EMBL CB619470 [ AGAATCTAATAAACCATATGGTGCAATATGCGCTTCTCCTGCTTATGTTCTCGAGCCCCATGGTTTACTGAAGGGGAAGAAGGCAACATCATTTCCACCAATGGCACACCTGCTTACTGATCAGAGTGCATGTGACAGTAGGGTGGTTGTTGATGGTAACCTTATCACTAGCAAAGCCCCAGGCTCCGCGACAGAGTTCGCGCTAGCCATTGTTGAGAAGCTGTTTGGTCGAGAGAAAGCGGTCAGTATAGCGAAGGAGTTGATTTTTATGTGATTATACACTTGGGCATTTATGCATCAGGTGCCTGTCACCTGTGAGTGATGCTTCTGTGAATAACTACTTATGCTGCTTTCCTAGGAATGCATAATATAAGCCTATAGCAGCATGTGGCAATCCATGTGAATGAGGAATAAATGTACATTATGAGTATCATGTGTAAAGAGTCGTCGTTGTTAGATTTCGGTGAGTTTACGCTGTTTTACAGTTACCTGGATAGATCTTGACTCTTGTTTTTGAGGCCCAAGGCTTGCAGAAAAATGGCATGGCAATGTTTAGTTTTCAAAGGCACAGGATTTGAATCCTGTCATGTGGAACTAATACGATTTGAGATAGAGGGACTGCATTGAGAACCTTTTTTA ]
[-] EMBL CB659033 [ TGCAATATGCGCTTCTCCTGCTTATGTTCTCGAGCCCCATGGTTTACTGAAGGGGAAGAAGGCAACATCATTTCCACCAATGGCACACCTGCTTACTGATCAGAGTGCATGTGACAGTAGGGTGGTTGTTGATGGTAACCTTATCACTAGCAAAGCCCCAGGCTCCGCGACAGAGTTCGCGCTAGCCATTGTTGAGAAGCTGTTTGGTCGAGAGAAAGCGGTCAGTATAGCGAAGGAGTTGATTTTTATGTGATTATACACTTGGGCATTTATGCATCAGGTGCCTGTCACCTGTGAGTGATGCTTCTGTGAATAACTACTTATGCTGCTTTCCTAGGAATGCATAATATAAGCCTATAGCAGCATGTGGCAATCCATGTGAATGAGGAATAAATGTACATTATGAGTATCATGTGTAAAGAGTCGTCGTTGTTAGATTTCGGTGAGTTTACGCTGTCTTACAGTTACCTGGATAGATCTTGACTCTTGTTTCTGAGGCCCAAGGCTTGCAGAAAAATGGCATGGCAATGTTTAGTTCTCAAAGGCACAGGATCTGAATCCTATCATGTGGAACTAATACGATCTGAGATAGAGGGACTGCATTGAGAACCTGTTTGATGGATAGAAAGAAAGGAACCTGTTGAGACTTTGGAATCTGTTGCATCAATCTTTTCGAATGTTTAGCAAAATACTTTCTATTATGATTGTCACTTTCACATCATCATCAGGAGGACTAATGTGTGATTGAAACGACATGAGTGTAATGCACTAGGAAAGTGCATCTTTATGTGTCTTGAAAACGAAAATTGTGCCATGACATA]
consensusID : consensus_8078#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence
[AGGCACCCTTCACGAAGTCGCCACCTCGATTTTTCCGGCGAACGACGCAAGAATAACACCCCCCCCCCCCCCTTACCTACGGGGATAGTGATACGATGGCGATGGCGGCCGCTTCCGCCTCCGCCATGGCGAGGCGGGCCGCTTCGTGGCCACGGCTCCTCCTCCTCTCCCGCGCCTTCGCCGCCGCCGCCGCTGACCCGAAGCGGGTGCTCGTGCCGGTCGCGGACGGCACGGAGCCGGTGGGGGCGGTCGTCCCCGCCTACGAGCTCTTCCGCCCCGGCGCGCGGGGCTTCTTTTTTTTTTCTG]
[+] EMBL CB619469 [AGGCACCCTTCACGAAGTCGCCACCTCGATTTTTCCGGCGAACGACGCAAGAATAACACCCCCCCCCCCCCCTTACCTACGGGGATAGTGATACGATGGCGATGGCGGCCGCTTCCGCCTCCGCCATGGCGAGGCGGGCCGCTTCGTGGCCACGGCTCCTCCTCCTCTCCCGCGCCTTCGCCGCCGCCGCCGCTGACCCGAAGCGGGTGCTCGTGCCGGTCGCGGACGGCACGGAGCCGGTGGGGGCGGTCGTCCCCGCCTACGAGCTCTTCCGCCCCGGCGCGCGGGGCTTCTTTTTTTTTTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8078#0 AGCGCACAGGCCACGCGTGCGCGTCCACCGAAACAGCGGCGGCGACGACGAGGCGATCGA 60
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 TTCCTGGACACTCGCGCCACGCCACCCCACTGTCCCTGCACGCTGCAGCTACCCCTACTC 120
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 TACCACTGCCCTCTCCGGCAGGGAAGCGAGGAAGAGGCACGCACCACGAAGTCGCCACCT 180
consensus_8078#1 ----------------------------------AGGCACCCTTCACGAAGTCGCCACCT 26
****** * ****************
consensus_8078#0 CGATTTTTCCGGCGAACGACGCAAGAATAACACCCCCCCCCCC---TTACCTACGGGGAT 237
consensus_8078#1 CGATTTTTCCGGCGAACGACGCAAGAATAACACCCCCCCCCCCCCCTTACCTACGGGGAT 86
******************************************* **************
consensus_8078#0 AGTGATACGATGGCGATGGCGGCCGCTTCCGCCTCCGCCATGGCGAGGCGGGCCGCTTCG 297
consensus_8078#1 AGTGATACGATGGCGATGGCGGCCGCTTCCGCCTCCGCCATGGCGAGGCGGGCCGCTTCG 146
************************************************************
consensus_8078#0 TGGCCACGGCTCCTCCTCCTCTCCCGCGCCTTCGCCGCCGCCGCCGCTGAGCCGAAGCGG 357
consensus_8078#1 TGGCCACGGCTCCTCCTCCTCTCCCGCGCCTTCGCCGCCGCCGCCGCTGACCCGAAGCGG 206
************************************************** *********
consensus_8078#0 GTGCTCGTGCCGGTCGCGGACGGCACGGAGCCGGTGGAGGCGGCCGCCACCGCCGACGTG 417
consensus_8078#1 GTGCTCGTGCCGGTCGCGGACGGCACGGAGCCGGTGGGGGCGGTCGTCCCCGCCTACGAG 266
************************************* ***** ** * ***** *** *
consensus_8078#0 CTCAACCGCGCCGGCGCGCGGGTCACCGTCGCCACGGCTGACCCCGCGGGCGACGACCGT 477
consensus_8078#1 CTCTTCCGCCCCGGCGCGCGGGGCTTCTTTTTTTTTTCTG-------------------- 306
*** **** ************ * * * ***
consensus_8078#0 GGCCTCCTGGTGGAGGCCGCGTTCGGGGTCAAGCTCGTCGCCGACGGCCGCGTCGCCGAC 537
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 CTGGAAGGCGAGGCCTTTGACCTCATCGCCCTACCCGGAGGAATGCCGGGATCAGCTAAC 597
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 CTCAGAGATTGCAAGGTGCTGGAGAAGATGGTCAAGAAGCAGGCAGAGCAGGGTGGCCTC 657
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 TACGCCGCCATCTGCGCCACGCCGGCGGTGACGCTGGCTCACTGGGGCTTGCTCAAAGGC 717
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 TTAAAGGCGACTTGCTATCCATCATTCATGGAGAAGTTCACCGCTGAAATTATCCCTGTG 777
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 AACTCTAGGGTGGTGGTAGATAGAAATGCAGTGACCAGCCAAGGGCCAGCAACAGCAATT 837
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 GAATATGCTCTCGCTTTGGTGGAGCAACTGTACGGCAAAGAGAAGTCGGAGGAGGTTGCA 897
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 GGACCCTTGTATGTTCGTCCTCAACCTGGGGTTGACTATGTCATAGATGAGTTCAATTCA 957
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 GTTGAGTGGAAATGCAGTGGTACACCTCAGGTTCTTGTGCCAGTTGCTAATGGTTCGGAG 1017
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 GAAATGGAAGCTCTTAATTTAATAGATATCTTGCGTAGAGCAGGAGCAAATGTTACCGTT 1077
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 GCATCAGTTGAGGATAAGTTGCAAGTTGTGACCCGCCGCCACAAATTTAACCTGATAGCT 1137
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 GATATTATGGTGGAAGAAGCTGCCAAAAGGGAATTCGATCTGATTGTCATGCCGGGTGGT 1197
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 CTGCCAGGTGCTCAAAAGCTTTCTAGTACAAAGGTACTTGTAGATTTACTAAAGAAACAG 1257
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 GCAGAATCTAATAAACCATATGGTGCAATATGCGCTTCTCCTGCTTATGTTCTCGAGCCC 1317
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 CATGGTTTACTGAAGGGGAAGAAGGCAACATCATTTCCACCAATGGCACACCTGCTTACT 1377
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 GATCAGAGTGCATGTGACAGTAGGGTGGTTGTTGATGGTAACCTTATCACTAGCAAAGCC 1437
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 CCAGGCTCCGCGACAGAGTTCGCGCTAGCCATTGTTGAGAAGCTGTTTGGTCGAGAGAAA 1497
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 GCGGTCAGTATAGCGAAGGAGTTGATTTTTATGTGATTATACACTTGGGCATTTATGCAT 1557
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 CAGGTGCCTGTCACCTGTGAGTGATGCTTCTGTGAATAACTACTTATGCTGCTTTCCTAG 1617
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 GAATGCATAATATAAGCCTATAGCAGCATGTGGCAATCCATGTGAATGAGGAATAAATGT 1677
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 ACATTATGAGTATCATGTGTAAAGAGTCGTCGTTGTTAGATTTCGGTGAGTTTACGCTGT 1737
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 TTTACAGTTACCTGGATAGATCTTGACTCTTGTTTTTGAGGCCCAAGGCTTGCAGAAAAA 1797
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 TGGCATGGCAATGTTTAGTTTTCAAAGGCACAGGATTTGAATCCTGTCATGTGGAACTAA 1857
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 TACGATTTGAGATAGAGGGACTGCATTGAGAACCTTTTTTATGGATAGAAAGAAAGGAAC 1917
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 CTGTTGAGACTTTGGAATCTGTTGCATCAATCTTTTCGAATGTTTAGCAAAATACTTTCT 1977
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 ATTATGATTGTCACTTTCACATCATCATCAGGAGGACTAATGTGTGATTGAAACGACATG 2037
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 AGTGTAATGCACTAGGAAAGTGCATCTTTATGTGTCTTGAAAACGAAAATTGTGCCATGA 2097
consensus_8078#1 ------------------------------------------------------------
consensus_8078#0 CATA 2101
consensus_8078#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||