These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1438 fasta sequence [ACCCCCACTTCCGCAGCTTCGCCTTCCCGCCTCACTCTCCCAAAAAACCCACCGCCATGGCGCCGCATTTCGTACTGGGCCCCGGCGTACCGCAGCAGCTGCTCATCCAGTCGGCGGCCGCCGGCGACCTCCCCGCCTTCAAGAAGTTTGCTCGTATGCTGGACGGCGGGAAGGGGCGGCTCAAGGAGGCGGTGGAGGCCGTGAAGAACCGCGGCGCTGGGGCTCTGCACCAAGCCGCCCGCTACGGGAGGACCGCGATGTGCGCGTACATGGTCGAGGAGCTCCAGGTGGACATCGACGCCGCCGATGAGTTAGGACATTGCGAGATAGTAAAGGTCTTACTGGTGAAAGGTGCTAATGTTGATTCATCTTCTGACCATGGGACACCACTGCATGTTGCTGCCTCAAAAAGTCAGGATGGTTGTATGAAGATTTTGTTGGACCACCATGCAGATTGTAACAAGACATTCTCTACAGTTTGTACACCTCTCATTGCTGCGATGATGGGTCGCTCACTGAAATGTTGTAAGCTTTTGATTGAGGCTGGTGCTGATGTTAAGGGTGTTGGTACTTTTACCCCCTTAATAGTTGCTGCAACTGAAGGCTTAACTGATTTCTATAAGTGCTTACTGGAGGGTGGTGCTGATCCTGATGTGCCTGATAAATTTGGGTTTCTGCCCATAGAAATTGCTGCACGTCAGAACAGGAGGAAAGATGTGGAGATCCTACTTCCAGTAACTTCTCGTATTCCATCTGTGCATGATTGGAGTGTTGATGGGATGATTACTTATGTAAACAAACAGGTGGAGGTTGACCCTTTCTTCAAAATAAGACCAGCTGATCTGAAGTTGGAAGGAAATAGGGCATACATGAGAAAAGACTATCTTACTGCCGCAAAACTCTACAATATGGCGATCGAGCACGACCCTGAAGATATGACCTTGTACTCTAACACGAGCGTTTGCTGGCTTAAGATGGGTAAAGGAATGAATGCTTTGGAAACTGCCCAAGTTTGCAGGATATTGCGCCCTGATTGGCCCAAGGGCTGCTACAGGGAAGGGACCGCTCACATGTTCATGAAGGACTATGAAAAGGCCTGCAATGCATTTCTTGATGGTTTCAAACTGGACCCAGCGAATATTGAGATTGAAAATGCGCTACGGGAGGCTTTGAAATCATTGAAGGCGTCTCGTGCTGCTTGAATTGCCTATCTGTTCGAGAGAGAACTAACTTTTGTACATGAGTAACACTTGTGTTTGCAAAGCCGTCAGCCATGCCACTAGTTGCTGAAGGTTTTCACCAGGTTCATGTATTCTGTGACTCCCATCAGACCACCAGCTAGTATCAATTACACCGTATAATTATATCTTAGTACTTTTTTTACTTGCGGAGAATAGTATTATCGCTGATTATGAACAAACTATTATCACTGATTATG] [+] EMBL AK110813 [ACCCCCACTTCCGCAGCTTCGCCTTCCCGCCTCACTCTCCCAAAAAACCCACCGCCATGGCGCCGCATTTCGTACTGGGCCCCGGCGTACCGCAGCAGCTGCTCATCCAGTCGGCGGCCGCCGGCGACCTCCCCGCCTTCAAGAAGTTTGCTCGTATGCTGGACGGCGGGAAGGGGCGGCTCAAGGAGGCGGTGGAGGCCGTGAAGAACCGCGGCGCTGGGGCTCTGCACCAAGCCGCCCGCTACGGGAGGACCGCGATGTGCGCGTACATGGTCGAGGAGCTCCAGGTGGACATCGACGCCGCCGATGAGTTAGGACATTGCGAGATAGTAAAGGTCTTACTGGTGAAAGGTGCTAATGTTGATTCATCTTCTGACCATGGGACACCACTGCATGTTGCTGCCTCAAAAAGTCAGGATGGTTGTATGAAGATTTTGTTGGACCACCATGCAGATTGTAACAAGACATTCTCTACAGTTTGTACACCTCTCATTGCTGCGATGATGGGTCGCTCACTGAAATGTTGTAAGCTTTTGATTGAGGCTGGTGCTGATGTTAAGGGTGTTGGTACTTTTACCCCCTTAATAGTTGCTGCAACTGAAGGCTTAACTGATTTCTATAAGTGCTTACTGGAGGGTGGTGCTGATCCTGATGTGCCTGATAAATTTGGGTTTCTGCCCATAGAAATTGCTGCACGTCAGAACAGGAGGAAAGATGTGGAGATCCTACTTCCAGTAACTTCTCGTATTCCATCTGTGCATGATTGGAGTGTTGATGGGATGATTACTTATGTAAACAAACAGGTGGAGGTTGACCCTTTCTTCAAAATAAGACCAGCTGATCTGAAGTTGGAAGGAAATAGGGCATACATGAGAAAAGACTATCTTACTGCCGCAAAACTCTACAATATGGCGATCGAGCACGACCCTGAAGATATGACCTTGTACTCTAACACGAGCGTTTGCTGGCTTAAGATGGGTAAAGGAATGAATGCTTTGGAAACTGCCCAAGTTTGCAGGATATTGCGCCCTGATTGGCCCAAGGGCTGCTACAGGGAAGGGACCGCTCACATGTTCATGAAGGACTATGAAAAGGCCTGCAATGCATTTCTTGATGGTTTCAAACTGGACCCAGCGAATATTGAGATTGAAAATGCGCTACGGGAGGCTTTGAAATCATTGAAGGCGTCTCGTGCTGCTTGAATTGCCTATCTGTTCGAGAGAGAACTAACTTTTGTACATGAGTAACACTTGTGTTTGCAAAGCCGTCAGCCATGCCACTAGTTGCTGAAGGTTTTCACCAGGTTCATGTATTCTGTGACTCCCATCAGACCACCAGCTAGTATCAATTACACCGTATAATTATATCTTAGTACTTTTTTTACTTGCGGAGAATAGTATTATCGCTGATTATGAACAAACTATTATCACTGATTATG] consensusID : consensus_8088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1045 fasta sequence [AGGAGCTGATGTTGATTCATCTTCTGACTGTGGGACGCCACTGCATATTGCAGCCGTGAAAAGTCATGATGGCTGTATGAAGATTTTATTGGACCACCATGCAGATTGTAATAAGGTATTTTCCACATTTTATACACCCCTCATCGCAGCGCTTATGGTTCGCTCATTGAAATGTGTGAAGCTTCTGATTAAGGCTGGTGCTGATATTAAGGGTGTTGGTACTTTTACCCCCTTAATTGCTGCTGCAACTGAAGGCTTAACTGATTTCTATAAGTGCTTACTCGAGGCTGGTGCTGATCCTAATGTGCCTGATGAAAACAGACGGAAAGATGTGGAGATCCTACTTCCAGTAACTTCTCGTATTCCATCTGTGTATGATTGGAGTGTTGATGGGATAATTACTTATGTAAACAAAAATGTGCAGGATGACCCCATGTACAAAATAAGACCAGCTGATCTGAAGTTAGAAGGAAGTAGGGCATAAAAGAGAGAGGACTATCTTACTGCCACAAAACTCTACACTATGGCGACGAATCTTGAACCTGAAGATGGAACTTGTACTCGAATAGGAGCATTTGCTTGGCTTAAGATGGGTGAAGGAATGAAAGCTTTGACAGATGCTCACCTCTGCAGGATGTTGTGTCCCGATTGGCCAAAGGCCTGCTACAGGGAAGGGGCTGCTCACATGTTCTTAAAGGACTGATAAGGCTTGCGATGCATTTCTTGATGGTCTTAAATTGGACCCAGCGAATATGGAGATTGAAAATGGTCTACGGGAGGCTTTCAAATCATTGAAGAAATCTCGTGCTGCCTGAATTACCTGTCAGTTCAAGAATTACATGTCAGTTCAAGACTCAGAACTTGTACTATGTAATTAACTCAATCTGGAGTCCGGAAAACAAGAACCTGGTAAAAACCTTTTGCAACTGGCACGGCTTTGTAAATTTTACTTGAAACTGATCGCAACTATTATCACTGAATGTGAGGTTCCAATCTACGAGTATTTTGTTGGACGTCGAGCAGTTACTTCAGTATAATCAAGCAA] [+] EMBL AK119566 [AGGAGCTGATGTTGATTCATCTTCTGACTGTGGGACGCCACTGCATATTGCAGCCGTGAAAAGTCATGATGGCTGTATGAAGATTTTATTGGACCACCATGCAGATTGTAATAAGGTATTTTCCACATTTTATACACCCCTCATCGCAGCGCTTATGGTTCGCTCATTGAAATGTGTGAAGCTTCTGATTAAGGCTGGTGCTGATATTAAGGGTGTTGGTACTTTTACCCCCTTAATTGCTGCTGCAACTGAAGGCTTAACTGATTTCTATAAGTGCTTACTCGAGGCTGGTGCTGATCCTAATGTGCCTGATGAAAACAGACGGAAAGATGTGGAGATCCTACTTCCAGTAACTTCTCGTATTCCATCTGTGTATGATTGGAGTGTTGATGGGATAATTACTTATGTAAACAAAAATGTGCAGGATGACCCCATGTACAAAATAAGACCAGCTGATCTGAAGTTAGAAGGAAGTAGGGCATAAAAGAGAGAGGACTATCTTACTGCCACAAAACTCTACACTATGGCGACGAATCTTGAACCTGAAGATGGAACTTGTACTCGAATAGGAGCATTTGCTTGGCTTAAGATGGGTGAAGGAATGAAAGCTTTGACAGATGCTCACCTCTGCAGGATGTTGTGTCCCGATTGGCCAAAGGCCTGCTACAGGGAAGGGGCTGCTCACATGTTCTTAAAGGACTGATAAGGCTTGCGATGCATTTCTTGATGGTCTTAAATTGGACCCAGCGAATATGGAGATTGAAAATGGTCTACGGGAGGCTTTCAAATCATTGAAGAAATCTCGTGCTGCCTGAATTACCTGTCAGTTCAAGAATTACATGTCAGTTCAAGACTCAGAACTTGTACTATGTAATTAACTCAATCTGGAGTCCGGAAAACAAGAACCTGGTAAAAACCTTTTGCAACTGGCACGGCTTTGTAAATTTTACTTGAAACTGATCGCAACTATTATCACTGAATGTGAGGTTCCAATCTACGAGTATTTTGTTGGACGTCGAGCAGTTACTTCAGTATAATCAAGCAA] [+] EMBL AK064117 [AGGAGCTGATGTTGATTCATCTTCTGACTGTGGGACGCCACTGCATATTGCAGCCGTGAAAAGTCATGATGGCTGTATGAAGATTTTATTGGACCACCATGCAGATTGTAATAAGGTATTTTCCACATTTTATACACCCCTCATCGCAGCGCTTATGGTTCGCTCACTGAAATGTGTGAAGCTTCTGATTAAGGCTGGTGCTGATATTAAGGGTGTTGGTACTTTTACCCCCTTAATTGCTGCTGCAACTGAAGGCTTAACTGATTTCTATAAGTGCTTACTCGAGGCTGGTGCTGATCCTAATGTGCCTGATGAAAACAGACGGAAAGATGTGGAGATCCTACTTCCAGTAACTTCTCGTATTCCATCTGTGTATGATTGGAGTGTTGATGGGATAATTACTTATGTAAACAAAAATGTGCAGGATGACCCCATGTACAAAATAAGACCAGCTGATCTGAAGTTAGAAGGAAGTAGGGCATAAAAGAGAGAGGACTATCTTACTGCCACAAAACTCTACACTATGGCGACGAATCTTGAACCTGAAGATGGAACTTGTACTCGAATAGGAGCATTTGCTTGGCTTAAGATGGGTGAAGGAATGAAAGCTTTGACAGATGCTCACCTCTGCAGGATGTTGTGTCCCGATTGGCCAAAGGCCTGCTACAGGGAAGGGGCTGCTCACATGTTCTTAAAGGACTGATAAGGCTTGCGATGCATTTCTTGATGGTCTTAAATTGGACCCAGCGAATATGGAGATTGAAAATGGTCTACGGGAGGCTTTCAAATCATTGAAGAAATCTCGTGCTGCCTGAATTACCTGTCAGTTCAAGAATTACATGTCAGTTCAAGACTCAAAACTTGTACTATGTAATTAACTCAATCTGGAGTCCGGAAAACAAGAACCTGGTAAAAACCTTTTGCAACTGGCACGGCTTTGTAAATTTTACTTGAAACTGATCGCAACT ] consensusID : consensus_8088#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 175 fasta sequence [ATGGAGTGAAGGAGTAGAAACAACTATTATCGCTGAATGTGAGGTTCCAATCTACGAGTATTTTGTTGGACGTCGAGCAGTTACTTCAGTATAATCAAGCAATTGGTATAATAA-ACTTTGTATCCACAATAATCGCACGACTAAATACAGGTAATGGTTACATGAAAAAAAAAAA] [-] EMBL CF327955 [ATGGAGTGAAGGAGTAGAAACAACTATTATCGCTGAATGTGAGGTTCCAATCTACGAGTATTTTGTTGGACGTCGAGCAGTTACTTCAGTATAATCAAGCAATTGGTATAATAA ACTTTGTATCCACAATAATCGCACGACTAAATACAGGTAATGGTTACATGAAAAAAAAAAA] [+] EMBL CF327954 [ TGGACTGAAGGAGTAGAAACAACTATTATCACTGAATGTGAGGTTCCAATCTACGAATATTTTGTTGGACGTCGAGCAGTTACTTCAGTATAATCAATCAATTGGTATAATAAGACTTTGTATCCACAATAATCGCACGAC AAATACAGG AATGGTTACATGAGATAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8088#0 ACCCCCACTTCCGCAGCTTCGCCTTCCCGCCTCACTCTCCCAAAAAACCCACCGCCATGG 60 consensus_8088#1 ------------------------------------------------------------ consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 CGCCGCATTTCGTACTGGGCCCCGGCGTACCGCAGCAGCTGCTCATCCAGTCGGCGGCCG 120 consensus_8088#1 ------------------------------------------------------------ consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 CCGGCGACCTCCCCGCCTTCAAGAAGTTTGCTCGTATGCTGGACGGCGGGAAGGGGCGGC 180 consensus_8088#1 ------------------------------------------------------------ consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 TCAAGGAGGCGGTGGAGGCCGTGAAGAACCGCGGCGCTGGGGCTCTGCACCAAGCCGCCC 240 consensus_8088#1 ------------------------------------------------------------ consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 GCTACGGGAGGACCGCGATGTGCGCGTACATGGTCGAGGAGCTCCAGGTGGACATCGACG 300 consensus_8088#1 ------------------------------------------------------------ consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 CCGCCGATGAGTTAGGACATTGCGAGATAGTAAAGGTCTTACTGGTGAAAGGTGCTAATG 360 consensus_8088#1 -------------------------------------------------AGGAGCTGATG 11 consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 TTGATTCATCTTCTGACCATGGGACACCACTGCATGTTGCTGCCTCAAAAAGTCAGGATG 420 consensus_8088#1 TTGATTCATCTTCTGACTGTGGGACGCCACTGCATATTGCAGCCGTGAAAAGTCATGATG 71 consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 GTTGTATGAAGATTTTGTTGGACCACCATGCAGATTGTAACAAGACATTCTCTACAGTTT 480 consensus_8088#1 GCTGTATGAAGATTTTATTGGACCACCATGCAGATTGTAATAAGGTATTTTCCACATTTT 131 consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 GTACACCTCTCATTGCTGCGATGATGGGTCGCTCACTGAAATGTTGTAAGCTTTTGATTG 540 consensus_8088#1 ATACACCCCTCATCGCAGCGCTTATGGTTCGCTCATTGAAATGTGTGAAGCTTCTGATTA 191 consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 AGGCTGGTGCTGATGTTAAGGGTGTTGGTACTTTTACCCCCTTAATAGTTGCTGCAACTG 600 consensus_8088#1 AGGCTGGTGCTGATATTAAGGGTGTTGGTACTTTTACCCCCTTAATTGCTGCTGCAACTG 251 consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 AAGGCTTAACTGATTTCTATAAGTGCTTACTGGAGGGTGGTGCTGATCCTGATGTGCCTG 660 consensus_8088#1 AAGGCTTAACTGATTTCTATAAGTGCTTACTCGAGGCTGGTGCTGATCCTAATGTGCCTG 311 consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 ATAAATTTGGGTTTCTGCCCATAGAAATTGCTGCACGTCAGAACAGGAGGAAAGATGTGG 720 consensus_8088#1 ATGAA------------------------------------AACAGACGGAAAGATGTGG 335 consensus_8088#2 ------------------------------------------ATGGAGTGAAGGAGTAGA 18 * * *** ** * consensus_8088#0 AGATCCTACTTCCAGTAACTTCTCGTATTCCATCTGTGCATGATTGGAGTGTTGATGGGA 780 consensus_8088#1 AGATCCTACTTCCAGTAACTTCTCGTATTCCATCTGTGTATGATTGGAGTGTTGATGGGA 395 consensus_8088#2 AACAACTATTATCGCTGAATGTGAGGTTCCAATCTACGAGTATTTTGT-TGGACGTCGAG 77 * *** * * * * * * * * **** * * ** * ** * * consensus_8088#0 TGATTACTT--ATGTAAACAAACAGGTGGAG--GTTGACCCTTTCTTCAAAATAAGACCA 836 consensus_8088#1 TAATTACTT--ATGTAAACAAAAATGTGCAG--GATGACCCCATGTACAAAATAAGACCA 451 consensus_8088#2 CAGTTACTTCAGTATAATCAAGCAATTGGTATAATAAACTTTGTATCCACAATAATCGCA 137 ****** * *** *** * ** ** * * ** ***** ** consensus_8088#0 GCTGATCTGAAGTTGGAAGGAAATAGGGCATACATGAGAAAAGACTATCTTACTGCCGCA 896 consensus_8088#1 GCTGATCTGAAGTTAGAAGGAAGTAGGGCATAAAAGAGAGAGGACTATCTTACTGCCACA 511 consensus_8088#2 ---------CGACTAAATACAGGTAATGGTTACATGAAAAAAAAAAA------------- 175 * * * ** * ** * ** * * * * consensus_8088#0 AAACTCTACAATATGGCGATCGAGCACGACCCTGAAGATATGACCTTGTACTCTAACACG 956 consensus_8088#1 AAACTCTACACTATGGCGACGAATCTTGAACCTGAAGATG-GAACTTGTACTCGAATAGG 570 consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 AGCGTTTGCT-GGCTTAAGATGGGTAAAGGAATGAATGCTTTGGAAACTGCCCAAGTTTG 1015 consensus_8088#1 AGCATTTGCTTGGCTTAAGATGGGTGAAGGAATGAAAGCTTTGACAGATGCTCACCTCTG 630 consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 CAGGATATTGCGCCCTGATTGGCCCAAGGGCTGCTACAGGGAAGGGACCGCTCACATGTT 1075 consensus_8088#1 CAGGATGTTGTGTCCCGATTGGCCAAAGGCCTGCTACAGGGAAGGGGCTGCTCACATGTT 690 consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 CATGAAGGACTATGAAAAGGCCTGCAATGCATTTCTTGATGGTTTCAAACTGGACCCAGC 1135 consensus_8088#1 CTTAAAGGACT--GATAAGGCTTGCGATGCATTTCTTGATGGTCTTAAATTGGACCCAGC 748 consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 GAATATTGAGATTGAAAATGCGCTACGGGAGGCTTTGAAATCATTGAAGGCGTCTCGTGC 1195 consensus_8088#1 GAATATGGAGATTGAAAATGGTCTACGGGAGGCTTTCAAATCATTGAAGAAATCTCGTGC 808 consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 TGCTTGAATTGCCTATCTGTTCGAGAGAGAACTAACTTTTGTACATGAGT-AACACTTGT 1254 consensus_8088#1 TGCCTGAATTACCTGTCAGTTCAAGAATTA---CATGTCAGTTCAAGACTCAGAACTTGT 865 consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 GTTTGCAAAGCCGTCAGCCATGCCACTAGTTGCTGAAGGTTTTCACCAGGTTCATGTATT 1314 consensus_8088#1 ACT----ATGTAATTAACTCAATCTGGAGTC-CGGAAAACAAGAACCTGGTAAAAACCTT 920 consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 CTGTGACTCCCATCAGACCACCAGCTAGTATCAATTACACCGTATAATTATATCTTAGTA 1374 consensus_8088#1 TTGCAACTGGCA-CGGCTTTGTAAATTTTACTTGAAACTGATCGCAACTAT-TATCACTG 978 consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 CTTTTTTTACTTGCGGAGAATAGTATTATCGCTGATTATGAACAAACTATTATCAC-TGA 1433 consensus_8088#1 AATGTGAGGTTCCAATCTACGAGTATT-TTGTTGGACGTCGAGCAGTTACTTCAGTATAA 1037 consensus_8088#2 ------------------------------------------------------------ consensus_8088#0 TTATG--- 1438 consensus_8088#1 TCAAGCAA 1045 consensus_8088#2 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||