cluster # 8089

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Oryza sativa
cluster # 8089 cluster # 8089 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8089#0 length = 937 sequences # 4

consensus_8089#1 length = 236 sequences # 1

consensusID : consensus_8089#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 937
fasta sequence

                              [CTCCACCCAAAAACCCTAGCCCGCCGCCGCCTCTCCCCTCCGCTCGCCGGAGCTCGCCTCCTCCTCCTAATCTTCTCTCAGTAACGCGTTGGTTCGATCTTCTTCGGCTCCCGATGGCTATGGCGCAGAGGGGATTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGCGGCGGCGGCGGAGGTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGT-GGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCGACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGTGGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGGTAAACAAGCGTGGGTGGAAGTATATAAAAGAATCGCAGAAGAAGTTACAAGATACCCCCAAAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTGCTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGGTTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTTCATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTCATCTTTGTTTCTGTCATATGTTTACAAGGGGCTGGACATTCAGACTGATGTCCACTGGTAACACCTGAACTTTTGGGCTGGTGTTAAACTGTTGGGATCATTGATCGGCACATGTACTCTCTAATACTTAACTGTTAATCTGTTCTGCTTGAAAAAA]

[+] EMBL AK066511             [CTCCACCCAAAAACCCTAGCCCGCCGCCGCCTCTCCCCTCCGCTCGCCGGAGCTCGCCTCCTCCTCCTAATCTTCTCTCAGTAACGCGTTGGTTCGATCTTCTTCGGCTCCCGATGGCTATGGCGCAGAGGGGATTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGCGGCGGCGGCGGAGGTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGT GGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCGACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGTGGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGGTAAACAAGCGTGGGTGGAAGTATATAAAAGAATCGCAGAAGAAGTTACAAGATACCCCCAAAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTGCTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGGTTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTTCATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTCATCTTTGTTTCTGTCATATGTTTACAAGGGGCTGGACATTCAGACTGATGTCCACTGGTAACACCTGAACTTTTGGGCTGGTGTTAAACTGTTGGGATCATTGATCGGCACATGTACTCTCTAATACTTAACTGTTAATCT                ]
[+] EMBL AU082882             [                                                                                                                 ATGGCTATGGCGCAGAGGGGATTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGCGGCGGCGGCGGAGGTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGT GGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCGACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGTGGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGGTAAACAAGCGTGGGTGGAAGTATATAAAAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU082883             [                                                                                                                                                                                                                                                         AGTTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGTGGGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCGACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGTGGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGGTAAACAAGCGTGGGTGGAAGTATATAAAAGAATCGCAGAAGAAGTTACAAGATACCCCCAAAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTGCTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGGTTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTTCATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTCATCTTTGTTTCTGTCATATGTTTACAAGGGGCTGGACATTCAGACTGATGTCCACTGGTAACACCTGAACTTTTGGGCTGGTGTTAAACTGTTGGGATCATTGATCGGCACATGTACTCTCTAATACTTAACTGTTAATCTGTTCTGCTTGAAAAAA]
[+] EMBL CB685209             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TATACATTAATCGCAGAAGAAGTTACAAGATACCCCCAAAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTGCTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGGTTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTTCATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTCATCTTTG                                                                                                                                                      ]




>consensus_8089#0
CTCCACCCAAAAACCCTAGCCCGCCGCCGCCTCTCCCCTCCGCTCGCCGGAGCTCGCCTC
CTCCTCCTAATCTTCTCTCAGTAACGCGTTGGTTCGATCTTCTTCGGCTCCCGATGGCTA
TGGCGCAGAGGGGATTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGC
AGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGCGG
CGGCGGCGGAGGTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACG
TGGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCG
ACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGT
GGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGG
TAAACAAGCGTGGGTGGAAGTATATAAAAGAATCGCAGAAGAAGTTACAAGATACCCCCA
AAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTG
CTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGG
TTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTT
CATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTC
ATCTTTGTTTCTGTCATATGTTTACAAGGGGCTGGACATTCAGACTGATGTCCACTGGTA
ACACCTGAACTTTTGGGCTGGTGTTAAACTGTTGGGATCATTGATCGGCACATGTACTCT
CTAATACTTAACTGTTAATCTGTTCTGCTTGAAAAAA

consensusID : consensus_8089#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [TCCCGATGGCTATGGCGCAGAGGGGGTTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGAGGCGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGTGGTGCAGTTCCTGCCGACGTGGGGCGTGGGCTACAAGGTCGTCAAGACCACCTGG]

[+] EMBL CA758598             [TCCCGATGGCTATGGCGCAGAGGGGGTTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGAGGCGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGTGGTGCAGTTCCTGCCGACGTGGGGCGTGGGCTACAAGGTCGTCAAGACCACCTGG]




>consensus_8089#1
TCCCGATGGCTATGGCGCAGAGGGGGTTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGC
CCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAG
CGGCGGCGGAGGCGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACG
TGGTGCAGTTCCTGCCGACGTGGGGCGTGGGCTACAAGGTCGTCAAGACCACCTGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8089#0      CTCCACCCAAAAACCCTAGCCCGCCGCCGCCTCTCCCCTCCGCTCGCCGGAGCTCGCCTC 60
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      CTCCTCCTAATCTTCTCTCAGTAACGCGTTGGTTCGATCTTCTTCGGCTCCCGATGGCTA 120
consensus_8089#1      ------------------------------------------------TCCCGATGGCTA 12
                                                                      ************

consensus_8089#0      TGGCGCAGAGGGGATTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGC 180
consensus_8089#1      TGGCGCAGAGGGGGTTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGC 72
                      ************* **********************************************

consensus_8089#0      AGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGCGG 240
consensus_8089#1      AGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCG---- 128
                      ********************************************************    

consensus_8089#0      CGGCGGCGGAGGTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACG 300
consensus_8089#1      --------GAGGCGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACG 180
                              **** ***********************************************

consensus_8089#0      TGGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCG 360
consensus_8089#1      TGGTGCAGTTCCTGCCGACGTGGGGCGTGGGCTACAAGGTCGTCAAGACCACCTGG---- 236
                      ***************** ************************ *************    

consensus_8089#0      ACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGT 420
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      GGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGG 480
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      TAAACAAGCGTGGGTGGAAGTATATAAAAGAATCGCAGAAGAAGTTACAAGATACCCCCA 540
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      AAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTG 600
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      CTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGG 660
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      TTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTT 720
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      CATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTC 780
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      ATCTTTGTTTCTGTCATATGTTTACAAGGGGCTGGACATTCAGACTGATGTCCACTGGTA 840
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      ACACCTGAACTTTTGGGCTGGTGTTAAACTGTTGGGATCATTGATCGGCACATGTACTCT 900
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      CTAATACTTAACTGTTAATCTGTTCTGCTTGAAAAAA 937
consensus_8089#1      -------------------------------------