Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8089 cluster # 8089       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8089#0 length = 937 sequences # 4  
consensus_8089#1 length = 236 sequences # 1  

consensusID : consensus_8089#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 937
fasta sequence
                              [CTCCACCCAAAAACCCTAGCCCGCCGCCGCCTCTCCCCTCCGCTCGCCGGAGCTCGCCTCCTCCTCCTAATCTTCTCTCAGTAACGCGTTGGTTCGATCTTCTTCGGCTCCCGATGGCTATGGCGCAGAGGGGATTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGCGGCGGCGGCGGAGGTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGT-GGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCGACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGTGGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGGTAAACAAGCGTGGGTGGAAGTATATAAAAGAATCGCAGAAGAAGTTACAAGATACCCCCAAAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTGCTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGGTTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTTCATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTCATCTTTGTTTCTGTCATATGTTTACAAGGGGCTGGACATTCAGACTGATGTCCACTGGTAACACCTGAACTTTTGGGCTGGTGTTAAACTGTTGGGATCATTGATCGGCACATGTACTCTCTAATACTTAACTGTTAATCTGTTCTGCTTGAAAAAA]

[+] EMBL AK066511             [CTCCACCCAAAAACCCTAGCCCGCCGCCGCCTCTCCCCTCCGCTCGCCGGAGCTCGCCTCCTCCTCCTAATCTTCTCTCAGTAACGCGTTGGTTCGATCTTCTTCGGCTCCCGATGGCTATGGCGCAGAGGGGATTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGCGGCGGCGGCGGAGGTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGT GGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCGACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGTGGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGGTAAACAAGCGTGGGTGGAAGTATATAAAAGAATCGCAGAAGAAGTTACAAGATACCCCCAAAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTGCTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGGTTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTTCATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTCATCTTTGTTTCTGTCATATGTTTACAAGGGGCTGGACATTCAGACTGATGTCCACTGGTAACACCTGAACTTTTGGGCTGGTGTTAAACTGTTGGGATCATTGATCGGCACATGTACTCTCTAATACTTAACTGTTAATCT                ]
[+] EMBL AU082882             [                                                                                                                 ATGGCTATGGCGCAGAGGGGATTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGCGGCGGCGGCGGAGGTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGT GGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCGACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGTGGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGGTAAACAAGCGTGGGTGGAAGTATATAAAAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AU082883             [                                                                                                                                                                                                                                                         AGTTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGTGGGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCGACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGTGGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGGTAAACAAGCGTGGGTGGAAGTATATAAAAGAATCGCAGAAGAAGTTACAAGATACCCCCAAAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTGCTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGGTTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTTCATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTCATCTTTGTTTCTGTCATATGTTTACAAGGGGCTGGACATTCAGACTGATGTCCACTGGTAACACCTGAACTTTTGGGCTGGTGTTAAACTGTTGGGATCATTGATCGGCACATGTACTCTCTAATACTTAACTGTTAATCTGTTCTGCTTGAAAAAA]
[+] EMBL CB685209             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TATACATTAATCGCAGAAGAAGTTACAAGATACCCCCAAAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTGCTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGGTTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTTCATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTCATCTTTG                                                                                                                                                      ]


>consensus_8089#0 CTCCACCCAAAAACCCTAGCCCGCCGCCGCCTCTCCCCTCCGCTCGCCGGAGCTCGCCTC CTCCTCCTAATCTTCTCTCAGTAACGCGTTGGTTCGATCTTCTTCGGCTCCCGATGGCTA TGGCGCAGAGGGGATTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGC AGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGCGG CGGCGGCGGAGGTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACG TGGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCG ACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGT GGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGG TAAACAAGCGTGGGTGGAAGTATATAAAAGAATCGCAGAAGAAGTTACAAGATACCCCCA AAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTG CTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGG TTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTT CATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTC ATCTTTGTTTCTGTCATATGTTTACAAGGGGCTGGACATTCAGACTGATGTCCACTGGTA ACACCTGAACTTTTGGGCTGGTGTTAAACTGTTGGGATCATTGATCGGCACATGTACTCT CTAATACTTAACTGTTAATCTGTTCTGCTTGAAAAAA



consensusID : consensus_8089#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence
                              [TCCCGATGGCTATGGCGCAGAGGGGGTTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGAGGCGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGTGGTGCAGTTCCTGCCGACGTGGGGCGTGGGCTACAAGGTCGTCAAGACCACCTGG]

[+] EMBL CA758598             [TCCCGATGGCTATGGCGCAGAGGGGGTTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGAGGCGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACGTGGTGCAGTTCCTGCCGACGTGGGGCGTGGGCTACAAGGTCGTCAAGACCACCTGG]


>consensus_8089#1 TCCCGATGGCTATGGCGCAGAGGGGGTTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGC CCCTGTCCACGCAGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAG CGGCGGCGGAGGCGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACG TGGTGCAGTTCCTGCCGACGTGGGGCGTGGGCTACAAGGTCGTCAAGACCACCTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8089#0      CTCCACCCAAAAACCCTAGCCCGCCGCCGCCTCTCCCCTCCGCTCGCCGGAGCTCGCCTC 60
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      CTCCTCCTAATCTTCTCTCAGTAACGCGTTGGTTCGATCTTCTTCGGCTCCCGATGGCTA 120
consensus_8089#1      ------------------------------------------------TCCCGATGGCTA 12
                                                                      ************

consensus_8089#0      TGGCGCAGAGGGGATTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGC 180
consensus_8089#1      TGGCGCAGAGGGGGTTGGGCCTGCTCCGGCGATCCCTCGGGCTCGGGCCCCTGTCCACGC 72
                      ************* **********************************************

consensus_8089#0      AGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCGGCGG 240
consensus_8089#1      AGAGAGCCCTGAGCAGCACCAGCCCCGCGGCGTCCGCGGAGGGGGGAGCGGCGGCG---- 128
                      ********************************************************    

consensus_8089#0      CGGCGGCGGAGGTGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACG 300
consensus_8089#1      --------GAGGCGGCGAAGGAGTCGAAGGGGAGGAAGAAGAAGAAGAACCTGTTCGACG 180
                              **** ***********************************************

consensus_8089#0      TGGTGCAGTTCCTGCCGTCGTGGGGCGTGGGCTACAAGGTCGCCAAGACCACCTGGCGCG 360
consensus_8089#1      TGGTGCAGTTCCTGCCGACGTGGGGCGTGGGCTACAAGGTCGTCAAGACCACCTGG---- 236
                      ***************** ************************ *************    

consensus_8089#0      ACGTCTCCTACCAGATCACCAAGATCAACCTCTACAAGGATGGTCGTCATGGGAAGGCGT 420
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      GGGGGATTCGCTACAAGGCCGGTGTTCAAGCTGCTGAAGCGCCAACAAAAATCAGTGGGG 480
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      TAAACAAGCGTGGGTGGAAGTATATAAAAGAATCGCAGAAGAAGTTACAAGATACCCCCA 540
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      AAGTAGAAACGCCAGTCACTGCTTAAGCTGAAACTGTGGATGTCTTGCTTGTCTTCACTG 600
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      CTGAAAGTGTTTTAGATGGCTGTTGCCAGATGAACAGAGCGCCACTGTAGAATGGATGGG 660
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      TTCCTTTTGGTTGATCGATGATGATTAAATTTGCCAAGGTGTTTGATATCCTTTTCTTTT 720
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      CATTTCCATAATGCACTTGGAAACTAGTGACAATGGCATGTAGTTGTAGTCTTCTAATTC 780
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      ATCTTTGTTTCTGTCATATGTTTACAAGGGGCTGGACATTCAGACTGATGTCCACTGGTA 840
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      ACACCTGAACTTTTGGGCTGGTGTTAAACTGTTGGGATCATTGATCGGCACATGTACTCT 900
consensus_8089#1      ------------------------------------------------------------
                                                                                  

consensus_8089#0      CTAATACTTAACTGTTAATCTGTTCTGCTTGAAAAAA 937
consensus_8089#1      -------------------------------------
                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)