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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_809#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 766 fasta sequence
[AGGGCTGCTCCCCCTCCCGCCGCCGCCACCGCCACCGCCGAGGAAAGCGAGGAGACGAAGGGCGGACATGACGGTGGAGAAGGTGGACGCGACCGTCGCCGACTTCGACGCCCACTTCGACAAGCTCTTCGCCGCCGGGGACGACGCCGAGGGCAAGGTGAAGCTGCTCCTCTTCCTCGCCGACCGCGACGCCTCCTCCAACCAAACCTGGTGCCCCGACTGCAACGTGGCGGAGCCGGTGATCTACGACAGGGTGGAGGCGGCGGCGAAGGGGAAGGAGAAGGACGTGGTGCTGCTGCGCGCGTACGTCGGCGACAAGCCGACGTGGAGGGACCCGGCGCACCCGTGGAGGGCTGACCCGCGGTTCAGGCTCACCGGCGTCCCCACGCTCATCAGGTGGGAGAATGGCGCCGAGGCGGCGCGCCTCGGGGACGACGAGGCCCACCTCGCCGACAAGGTCGACGCCGTAGTCAACGCCGCCAATTGAAACCAAAGGCACAGCTTCTTGTATGATCTCTGCTAGTATCTCTCTGATCTCGAGTGAATCCAAGTGATGAGAAAATGATGGTTATTGCGATGGATGAACTTGCTTGTAACTTGGAAATGGAAGATAAAACAAAGTTGGTGTTCATTTCAAANNNNAAANNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNCCTTGAGGGGGGCCCGGCCCCAATCGCCCTATGGGAGTGGTTACGCGCCTCCTGGGCGGCTTTACAACGCGGATGGGAAACC]
[+] EMBL BE040654 [AGGGCTGCTCCCCCTCCCGCCGCCGCCACCGCCACCGCCGAGGAAAGCGAGGAGACGAAGGGCGGACATGACGGTGGAGAAGGTGGACGCGACCGTCGCCGACTTCGACGCCCACTTCGACAAGCTCTTCGCCGCCGGGGACGACGCCGAGGGCAAGGTGAAGCTGCTCCTCTTCCTCGCCGACCGCGACGCCTCCTCCAACCAAACCTGGTGCCCCGACTGCAACGTGGCGGAGCCGGTGATCTACGACAGGGTGGAGGCGGCGGCGAAGGGGAAGGAGAAGGACGTGGTGCTGCTGCGCGCGTACGTCGGCGACAAGCCGACGTGGAGGGACCCGGCGCACCCGTGGAGGGCTGACCCGCGGTTCAGGCTCACCGGCGTCCCCACGCTCATCAGGTGGGAGAATGGCGCCGAGGCGGCGCGCCTCGGGGACGACGAGGCCCACCTCGCCGACAAGGTCGACGCCGTAGTCAACGCCGCCAATTGAAACCAAAGGCACAGCTTCTTGTATGATCTCTGCTAGTATCTCTCTGATCTCGAGTGAATCCAAGTGATGAGAAAATGATGGTTATTGCGATGGATGAACTTGCTTGTAACTTGGAAATGGAAGATAAAACAAAGTTGGTGTTCATTTCAAANNNNAAANNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNNNNNNCCTTGAGGGGGGCCCGGCCCCAATCGCCCTATGGGAGTGGTTACGCGCCTCCTGGGCGGCTTTACAACGCGGATGGGAAACC]
consensusID : consensus_809#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence
[CCGCCGCCACCGCCACCGCCGAGGAAAGCGAGGAGACGAAGGGCGGACATGACGGTGGAGAAGGTGGACGCGACCGTCGCCGACTTCGACGCCCACTTCGACAAGCTCTTCGCCGCCGGGGACGACGCCGAGGGCAAGGTGAAGCTGCTCCTCTTCCTCGCCGACCGCGACGCCTCCTCCAACCAAACCTGGTGCCCCGACTGCAACGTGGCGGAGCCGGTGATCTACGACAGGGTGGAGGCGGCGGCGAAGGGGAAGGAGAAGGACGTGGTGCTGCTGCGCGCGTACGTCGGCGACAAGCCGACGTGGAGGGACCCGGCGCACCCGTGGAGGGCTGACCCGCGGTTCAGGCTCACCGGCGTCCCCACGCTCATCAGGTGGGAGAATGGCGCCGCGGCGGCGCGCCTCGGGGACGACGAGGCCCACCTCGCCGACAAGGTCGACGCCGTAGTCAACGCCGCCAATTGAAACCAAAGGCACAGCTTCTTGTATGATCTCTGCTAGTATCTCTCTGATCTCGAGTGAATCCAAGTGATGAGAAAATGATGGTTATTGCGATGGATGAACTTGCTTGTAACTTGGAAATGGAAGAATAAAACAAAGTTTGGTGGTCAATTTCAAAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCC]
[+] EMBL BE041042 [CCGCCGCCACCGCCACCGCCGAGGAAAGCGAGGAGACGAAGGGCGGACATGACGGTGGAGAAGGTGGACGCGACCGTCGCCGACTTCGACGCCCACTTCGACAAGCTCTTCGCCGCCGGGGACGACGCCGAGGGCAAGGTGAAGCTGCTCCTCTTCCTCGCCGACCGCGACGCCTCCTCCAACCAAACCTGGTGCCCCGACTGCAACGTGGCGGAGCCGGTGATCTACGACAGGGTGGAGGCGGCGGCGAAGGGGAAGGAGAAGGACGTGGTGCTGCTGCGCGCGTACGTCGGCGACAAGCCGACGTGGAGGGACCCGGCGCACCCGTGGAGGGCTGACCCGCGGTTCAGGCTCACCGGCGTCCCCACGCTCATCAGGTGGGAGAATGGCGCCGCGGCGGCGCGCCTCGGGGACGACGAGGCCCACCTCGCCGACAAGGTCGACGCCGTAGTCAACGCCGCCAATTGAAACCAAAGGCACAGCTTCTTGTATGATCTCTGCTAGTATCTCTCTGATCTCGAGTGAATCCAAGTGATGAGAAAATGATGGTTATTGCGATGGATGAACTTGCTTGTAACTTGGAAATGGAAGAATAAAACAAAGTTTGGTGGTCAATTTCAAAAAAAAAAAAAAAAAAAAACTCGAGGGGGGGCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_809#0 AGGGCTGCTCCCCCTCCCGCCGCCGCCACCGCCACCGCCGAGGAAAGCGAGGAGACGAAG 60
consensus_809#1 -------------------CCGCCGCCACCGCCACCGCCGAGGAAAGCGAGGAGACGAAG 41
*****************************************
consensus_809#0 GGCGGACATGACGGTGGAGAAGGTGGACGCGACCGTCGCCGACTTCGACGCCCACTTCGA 120
consensus_809#1 GGCGGACATGACGGTGGAGAAGGTGGACGCGACCGTCGCCGACTTCGACGCCCACTTCGA 101
************************************************************
consensus_809#0 CAAGCTCTTCGCCGCCGGGGACGACGCCGAGGGCAAGGTGAAGCTGCTCCTCTTCCTCGC 180
consensus_809#1 CAAGCTCTTCGCCGCCGGGGACGACGCCGAGGGCAAGGTGAAGCTGCTCCTCTTCCTCGC 161
************************************************************
consensus_809#0 CGACCGCGACGCCTCCTCCAACCAAACCTGGTGCCCCGACTGCAACGTGGCGGAGCCGGT 240
consensus_809#1 CGACCGCGACGCCTCCTCCAACCAAACCTGGTGCCCCGACTGCAACGTGGCGGAGCCGGT 221
************************************************************
consensus_809#0 GATCTACGACAGGGTGGAGGCGGCGGCGAAGGGGAAGGAGAAGGACGTGGTGCTGCTGCG 300
consensus_809#1 GATCTACGACAGGGTGGAGGCGGCGGCGAAGGGGAAGGAGAAGGACGTGGTGCTGCTGCG 281
************************************************************
consensus_809#0 CGCGTACGTCGGCGACAAGCCGACGTGGAGGGACCCGGCGCACCCGTGGAGGGCTGACCC 360
consensus_809#1 CGCGTACGTCGGCGACAAGCCGACGTGGAGGGACCCGGCGCACCCGTGGAGGGCTGACCC 341
************************************************************
consensus_809#0 GCGGTTCAGGCTCACCGGCGTCCCCACGCTCATCAGGTGGGAGAATGGCGCCGAGGCGGC 420
consensus_809#1 GCGGTTCAGGCTCACCGGCGTCCCCACGCTCATCAGGTGGGAGAATGGCGCCGCGGCGGC 401
***************************************************** ******
consensus_809#0 GCGCCTCGGGGACGACGAGGCCCACCTCGCCGACAAGGTCGACGCCGTAGTCAACGCCGC 480
consensus_809#1 GCGCCTCGGGGACGACGAGGCCCACCTCGCCGACAAGGTCGACGCCGTAGTCAACGCCGC 461
************************************************************
consensus_809#0 CAATTGAAACCAAAGGCACAGCTTCTTGTATGATCTCTGCTAGTATCTCTCTGATCTCGA 540
consensus_809#1 CAATTGAAACCAAAGGCACAGCTTCTTGTATGATCTCTGCTAGTATCTCTCTGATCTCGA 521
************************************************************
consensus_809#0 GTGAATCCAAGTGATGAGAAAATGATGGTTATTGCGATGGATGAACTTGCTTGTAACTTG 600
consensus_809#1 GTGAATCCAAGTGATGAGAAAATGATGGTTATTGCGATGGATGAACTTGCTTGTAACTTG 581
************************************************************
consensus_809#0 GAAATGGAAGA-TAAAACAAAGTT-GGTGTTCATTTCAAANNNNAAANNNNNNNNNNNNN 658
consensus_809#1 GAAATGGAAGAATAAAACAAAGTTTGGTGGTCAATTTCAAAAAAAAAAAAAAAAAAAAAC 641
*********** ************ **** *** ** ** ***
consensus_809#0 NTNNNNNNNNNNNNNNNNNNNNNNNNCCTTGAGGGGGGCCCGGCCCCAATCGCCCTATGG 718
consensus_809#1 TCGAGGGGGGGCCCC--------------------------------------------- 656
consensus_809#0 GAGTGGTTACGCGCCTCCTGGGCGGCTTTACAACGCGGATGGGAAACC 766
consensus_809#1 ------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||