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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8090#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 837 fasta sequence
[ATAAAAAAAAATCTGCTCCCTTTTTTCATGTCATATAGGAAAAAAATTCCATTACAAAATACAAATATCCACGTTCCTTACTTAAAGCTATGATAGTTGTAAAACCAAACAACGATTACAAATAAGAGTCACCACCTCTAAACAACGCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTGCAATTCATTTTTTTTGACAAATTTAAATGGAGCCAAGGCTATCCAGAAACCAGAATCGAGCCTATCTGAACGTGGGAAGCTGCAGTCCCAGCAAATATTTTTTCCCTAAATGCCACAAATGGAGCGAAGGCTATCAACAATCGAGCCTATCTGCCCGTGCGAAGCTGCAGTCCCAGCAAACTTCAGATGTTTCGGTGCTTCAGCTCGGTCAAAGTAGAAAGACCCTGAGGTTAGCTTCTCTTTGGGTTGCAAAGCTAACCAGATCACTGTATCAGCACCTTCATCGTTTGATCTCAGGTTTCCTGATAACTTCTCTGAAAGCCCAGGCAGGCTCTTGGAGACTCCAGGTGTGTCAGCCCATCCTGGATGCATCGAATAGAAACCTACCCCCTTGTTGCTGCATTTTTCAGACCACCGTTCGGTGAGTGCAACCTGAACTCTTTTGTTACGGGCATATTGCTGTGTTCCATCGAAGTTGTTTTCACCGAACTGAAGTATAAACAATAGTGAAAAAGGACTGTTATTGCAGTATCTGACTACTTTCACATGCTACTTCATTTTTATGACAAAACAAAACATCATGATTCTATGGTTTCCATAACTTTAGACATGCATATTTCGT]
[+] EMBL CB624068 [ATAAAAAAAAATCTGCTCCCTTTTTTCATGTCATATAGGAAAAAAATTCCATTACAAAATACAAATATCCACGTTCCTTACTTAAAGCTATGATAGTTGTAAAACCAAACAACGATTACAAATAAGAGTCACCACCTCTAAACAACGCACCAGTGGTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTGCAATTCATTTTTTTTGACAAATTTAAATGGAGCCAAGGCTATCCAGAAACCAGAATCGAGCCTATCTGAACGTGGGAAGCTGCAGTCCCAGCAAATATTTTTTCCCTAAATGCCACAAATGGAGCGAAGGCTATCAACAATCGAGCCTATCTGCCCGTGCGAAGCTGCAGTCCCAGCAAACTTCAGATGTTTCGGTGCTTCAGCTCGGTCAAAGTAGAAAGACCCTGAGGTTAGCTTCTCTTTGGGTTGCAAAGCTAACCAGATCACTGTATCAGCACCTTCATCGTTTGATCTCAGGTTTCCTGATAACTTCTCTGAAAGCCCAGGCAGGCTCTTGGAGACTCCAGGTGTGTCAGCCCATCCTGGATGCATCGAATAGAAACCTACCCCCTTGTTGCTGCATTTTTCAGACCACCGTTCGGTGAGTGCAACCTGAACTCTTTTGTTACGGGCATATTGCTGTGTTCCATCGAAGTTGTTTTCACCGAACTGAAGTATAAACAATAGTGAAAAAGGACTGTTATTGCAGTATCTGACTACTTTCACATGCTACTTCATTTTTATGACAAAACAAAACATCATGATTCTATGGTTTCCATAACTTTAGACATGCATATTTCGT]
consensusID : consensus_8090#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 751 fasta sequence
[TACAGCCCCCTGTGCTTGGCATCACGTGGTGCCACTGTTTATATGCTTTGCCGTAACAAGGAAAGAGGAGAGACTGCTCTCACTCAAATACGATCTAAAACTGGCAACATGAATGTTCATCTGGAGATTTGTGACCTTTCATCTATCAGTGAAGTCAAATCATTTGCAACAAAATTCTCTTCAACAGATAAACCACTTCATGTCCTGGTTAACAATGCTGGTTTACTAGAGCACAAGCGTGTGACTACGCCAGAAGGGTTGGAGCTCAATTTCGCTGTGAATGTAGCAGCAACATACACTTTAACAGAGCTAGTAATGCCACTGTTGGAGAAAGCAGCACCTGATGCTCGTGTCATTACAGTTTCTTCAGGAGGTATGTACACCGAGCCATTGAACAAGGATTTGCAGGTAAATTTGTTTCCTCTATGCTCTTATTCCACAGTTGAACACAATGTGTAAATTGTGAAAATAAAACTTAATCATTACGATTTTTTCGTTTGTCATGCTCATGCCTCTCTTTCTCAAAACCTTTTTCGTTTCTAAGTTTGCAAGAGTGTTGTTAGGAGAAAGATATTTATACAGTAGAACTTGCTAAGAGGGCCCACTAGGAAGTTAGCAAAACAGAACAAAATAATATAGTTGGTGGAACACTTGATTTTTTGTTTTCATACAGTTCACTTTGTGGTGCAAAATTCAAGCACCCTATTTATCTAGTTCCTCAACTGATTGTCACTGAAAACGAATTAGCTTT]
[+] EMBL CB624067 [TACAGCCCCCTGTGCTTGGCATCACGTGGTGCCACTGTTTATATGCTTTGCCGTAACAAGGAAAGAGGAGAGACTGCTCTCACTCAAATACGATCTAAAACTGGCAACATGAATGTTCATCTGGAGATTTGTGACCTTTCATCTATCAGTGAAGTCAAATCATTTGCAACAAAATTCTCTTCAACAGATAAACCACTTCATGTCCTGGTTAACAATGCTGGTTTACTAGAGCACAAGCGTGTGACTACGCCAGAAGGGTTGGAGCTCAATTTCGCTGTGAATGTAGCAGCAACATACACTTTAACAGAGCTAGTAATGCCACTGTTGGAGAAAGCAGCACCTGATGCTCGTGTCATTACAGTTTCTTCAGGAGGTATGTACACCGAGCCATTGAACAAGGATTTGCAGGTAAATTTGTTTCCTCTATGCTCTTATTCCACAGTTGAACACAATGTGTAAATTGTGAAAATAAAACTTAATCATTACGATTTTTTCGTTTGTCATGCTCATGCCTCTCTTTCTCAAAACCTTTTTCGTTTCTAAGTTTGCAAGAGTGTTGTTAGGAGAAAGATATTTATACAGTAGAACTTGCTAAGAGGGCCCACTAGGAAGTTAGCAAAACAGAACAAAATAATATAGTTGGTGGAACACTTGATTTTTTGTTTTCATACAGTTCACTTTGTGGTGCAAAATTCAAGCACCCTATTTATCTAGTTCCTCAACTGATTGTCACTGAAAACGAATTAGCTTT]
consensusID : consensus_8090#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence
[GACGANACGAACGAACGAGCGAGCGAGCGAAGGAGCANNTTAAGATGTTCATCCAGAAGGCATGGAGGACGGCGGCGTTTGGGGTCTACGGCTTCACGCAGTTCACCAAATCCGGCTTCGTGGAACATGCCAAGAANTTCAGAGAGGAGGATATGCAGATCCGGCTGGATGGGAAAAATTGCCTAGTAACTGGGGCTAATTCCGGCATAGGTTTTGCTACATCCGAGGGCTTGGCATCACGTGGTGCCACTGTTTATATGCTTTGCCGTAACAAGGAAAGAGGAGAGACTGCTCTCAGTCAAATACGATCTAAAACTGGCAACATGNATGTTCCATCTGGGAGGATTTTGTGGACCTTNTCATCTATCAGTTGANGTCAAATCATTTNCAACAAAATTCTCTTCAANAGGTTAACCCCTTTCATGTCCTGGTTAACAATNTGGGTTTACTAGAGCACAAGCGTGTGACTACGNCAGNANNGTTGGAGCTCAATTTCGCTGTGAATGTNNNAGCAACATACACTTTAACAGNNNTAGTAATGCCACTGTTGGAGNANNNNNNACNNNATGCTCNNGTCATTACAGTTTCTTNNNNN]
[+] EMBL C25982 [GACGANACGAACGAACGAGCGAGCGAGCGAAGGAGCANNTTAAGATGTTCATCCAGAAGGCATGGAGGACGGCGGCGTTTGGGGTCTACGGCTTCACGCAGTTCACCAAATCCGGCTTCGTGGAACATGCCAAGAANTTCAGAGAGGAGGATATGCAGATCCGGCTGGATGGGAAAAATTGCCTAGTAACTGGGGCTAATTCCGGCATAGGTTTTGCTACATCCGAGGGCTTGGCATCACGTGGTGCCACTGTTTATATGCTTTGCCGTAACAAGGAAAGAGGAGAGACTGCTCTCAGTCAAATACGATCTAAAACTGGCAACATGNATGTTCCATCTGGGAGGATTTTGTGGACCTTNTCATCTATCAGTTGANGTCAAATCATTTNCAACAAAATTCTCTTCAANAGGTTAACCCCTTTCATGTCCTGGTTAACAATNTG ]
[+] EMBL CF196158 [ CTTCGTGGAACATGCCAAGAAATTCAGAGAGGAGGATATGCAGATCCGGCTGGATGGGAAAAATTGCCTAGTAACTGGGGCTAATTCCGGCATAGGTTTTGCTACAGCCGAGGGCTTGGCATCACGTGGTGCCACTGTTTATATGCTTTGCCGTAACAAGGAAAGAGGAGAGACTGCTCTCAGTCAAATACGATCTAAAACTGGCAACATGAATGTT CATCT GGA GA TTTGT GACCTT TCATCTATCAG TGAAGTCAAATCATTTGCAACAAAATTCTCTTCAACAGATAAACCAC TTCATGTCCTGGTTAACAATGCTGGTTTACTAGAGCACAAGCGTGTGACTACGNCAGNANNGTTGGAGCTCAATTTCGCTGTGAATGTNNNAGCAACATACACTTTAACAGNNNTAGTAATGCCACTGTTGGAGNANNNNNNACNNNATGCTCNNGTCATTACAGTTTCTTNNNNN]
consensusID : consensus_8090#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 575 fasta sequence
[TTTTTTTTTTTTTTATCCAGAAACTAGAATCGAGCCTATCTGAACGTGGGAAGCTGCAGTCCCAGCAAATATTTTTTCCCTAAATGCCACAAATGGAGCGAAGGCTATCAACAATCGAGCCTATCTGCCCGTGCGAANTGCAGTCCCAGCAAACTTCAGATGTTTCGGTGCTTCAGCTCGGTCAAAGTAGAAAAGACCCTGAGGTTAGCTTCTCTTTGGGTTGCAAAGCTAACCAGATCACTGTATCAGCACCTTCATCGTTTGATCTCAGGTTTCCTGATAACTTCTCTGAAAGCCCAGGCAGGCTCTTGGAGACTCCAGGTGTGTCAGCCCATCCTGGATGCATCGAATAGAAACCTACCCCCTTGTTGCTGCATTTTTCAGACCACCGTTCGGTGAGTGCAACCTGAACTCTTTTGTTACGGGCATATTGCTGTGTTCCATCGAAGTTGTTTTCACCGAACTGGNAAATCCTTGTTCAATGGCTCGGTGTACATACCTCCTGAAGAAAACTGTAATGACACGAGCATCAGGTGCTGCTTTCTCCCAAAGTGGGNATTACTAGCTCTGGTTAA]
[-] EMBL AU092213 [TTTTTTTTTTTTTTATCCAGAAACTAGAATCGAGCCTATCTGAACGTGGGAAGCTGCAGTCCCAGCAAATATTTTTTCCCTAAATGCCACAAATGGAGCGAAGGCTATCAACAATCGAGCCTATCTGCCCGTGCGAANTGCAGTCCCAGCAAACTTCAGATGTTTCGGTGCTTCAGCTCGGTCAAAGTAGAAAAGACCCTGAGGTTAGCTTCTCTTTGGGTTGCAAAGCTAACCAGATCACTGTATCAGCACCTTCATCGTTTGATCTCAGGTTTCCTGATAACTTCTCTGAAAGCCCAGGCAGGCTCTTGGAGACTCCAGGTGTGTCAGCCCATCCTGGATGCATCGAATAGAAACCTACCCCCTTGTTGCTGCATTTTTCAGACCACCGTTCGGTGAGTGCAACCTGAACTCTTTTGTTACGGGCATATTGCTGTGTTCCATCGAAGTTGTTTTCACCGAACTGGNAAATCCTTGTTCAATGGCTCGGTGTACATACCTCCTGAAGAAAACTGTAATGACACGAGCATCAGGTGCTGCTTTCTCCCAAAGTGGGNATTACTAGCTCTGGTTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8090#0 -------------------------ATAAAAAAAAATCTGCTCCCTTTTTTCATGTCATA 35
consensus_8090#3 ------------------------------------------------------------
consensus_8090#1 ------------------------------------------------------------
consensus_8090#2 GACGANACGAACGAACGAGCGAGCGAGCGAAGGAGCANNTTAAGATGTTCATCCAGAAGG 60
consensus_8090#0 TAGGAAAAAAATTCCATTACAAAATACAAATATCCACGTTCCTTACTTAAAGCTATGATA 95
consensus_8090#3 ------------------------------------------------------------
consensus_8090#1 ------------------------------------------------------------
consensus_8090#2 CATGGAGGACGGCGGCGTTTGGGGTCTACGGCTTCACGCAGTTCACCAAATCCGGCTTCG 120
consensus_8090#0 GTTGTAAAACCAAACAACGATTACAAATAAGAGTCACCACCTCTAAACAACGCACCAGTG 155
consensus_8090#3 ------------------------------------------------------------
consensus_8090#1 ------------------------------------------------------------
consensus_8090#2 TGGAACATGCCAAGAANTTCAGAGAGGAGGATATGCAGATCCGGCTGGATGGGAAAAATT 180
consensus_8090#0 GTCTAGTGGTAGAATAGTACCCTGCCACGGTACAGACCCGGGTTCGATTCCCGGCTGGTG 215
consensus_8090#3 ------------------------------------------------------------
consensus_8090#1 ----------------------------------TACAGCCCCCT-GTGCTTGGC-ATCA 24
consensus_8090#2 GCCTAGTAACTGGGGCTAATTCCGGCATAGGTTTTGCTACATCCGAGGGCTTGGC-ATCA 239
consensus_8090#0 CAATTCATTTTTTTTGACAAATTTAAATGGAGCCAAGGCTATCCAGAAACCAG----AAT 271
consensus_8090#3 --------------------------TTTTTTTTTTTTTTATCCAGAAACTAG----AAT 30
consensus_8090#1 CGTGGTGCCACTGTTTATATGCTTTGCCGTAACAAGGAAAGAGGAGAGACTGCTCTCACT 84
consensus_8090#2 CGTGGTGCCACTGTTTATATGCTTTGCCGTAACAAGGAAAGAGGAGAGACTGCTCTCAGT 299
*** ** * *
consensus_8090#0 CGAGC-CTATCTGAACGTGGGAAGCTGCA-GTCC---CAGCAAATATTTTTT---CCCTA 323
consensus_8090#3 CGAGC-CTATCTGAACGTGGGAAGCTGCA-GTCC---CAGCAAATATTTTTT---CCCTA 82
consensus_8090#1 CAAATACGATCTAAAACTGGCAACATGAATGTTC-ATCTGGAGA---TTTGTGA--CCTT 138
consensus_8090#2 CAAATACGATCTAAAACTGGCAACATGNATGTTCCATCTGGGAGGATTTTGTGGACCTTN 359
* * * **** ** *** ** ** * ** * * * *** * * *
consensus_8090#0 AATGCCACAAATGGAGCGAAGGCTATCAACAATCGAGCCTATCTGCCCGTGCGAAGC--- 380
consensus_8090#3 AATGCCACAAATGGAGCGAAGGCTATCAACAATCGAGCCTATCTGCCCGTGCGAAN---- 138
consensus_8090#1 TCATCTATCAGT-GAAGTCAAATCATTTGCAACAAAATTCTCTTCAACAGATAAACCACT 197
consensus_8090#2 TCATCTATCAGTTGANGTCAAATCATTTNCAACAAAATTCTCTTCAANAGGTTAACCCCT 419
* * * * ** * ** *** * * **
consensus_8090#0 TGCA-GTCCCAGCAAAC--TTCAGATGTTTCGGTGCTTCAGCTCG-GTCAAAGTAGAAA- 435
consensus_8090#3 TGCA-GTCCCAGCAAAC--TTCAGATGTTTCGGTGCTTCAGCTCG-GTCAAAGTAGAAAA 194
consensus_8090#1 T-CATGTCCTGGTTAACAATGCTGGTTTACTAGAGCACAAGCGTGTGACTACGCCAGAA- 255
consensus_8090#2 TTCATGTCCTGGTTAACAATNTGGGTTTACTAGAGCACAAGCGTGTGACTACGNCAGNA- 478
* ** **** * *** * * * * * ** *** * * * * * *
consensus_8090#0 GACCCTGAGGTTAGCTTCTCTTTGGGTTGCAAAGCTAACCAGATCACTGTATCAGCACCT 495
consensus_8090#3 GACCCTGAGGTTAGCTTCTCTTTGGGTTGCAAAGCTAACCAGATCACTGTATCAGCACCT 254
consensus_8090#1 GGGTTGGAGCTCAATTTCGCTGTGAATGTAGCAGCAACATA---CACTTTAACAGAGCTA 312
consensus_8090#2 NNGTTGGAGCTCAATTTCGCTGTGAATGTNNNAGCAACATA---CACTTTAACAGNNNTA 535
*** * * *** ** ** * *** * * **** ** ***
consensus_8090#0 TCATCGTTTGATCTCAGGTTTCCTGATAACTTCTCTGAAAGCCCAGGCAGGCTCTTGGAG 555
consensus_8090#3 TCATCGTTTGATCTCAGGTTTCCTGATAACTTCTCTGAAAGCCCAGGCAGGCTCTTGGAG 314
consensus_8090#1 GTAATGCC-ACTGTTGGAGAAAGCAGCACCTGATGCTCGTGTCATTACAGTTTCTTCAGG 371
consensus_8090#2 GTAATGCC-ACTGTTGGAGNANNNNNNACNNNATGCTCNNGTCATTACAGTTTCTTNNNN 594
* * * * * * * * * *** ****
consensus_8090#0 ACTCCAGGTGTGTCAGCCCATCCTGGATGCATCGAATAGAAACCTACCCCCT------TG 609
consensus_8090#3 ACTCCAGGTGTGTCAGCCCATCCTGGATGCATCGAATAGAAACCTACCCCCT------TG 368
consensus_8090#1 AGGTATGTACACCGAGCCATTGAACAAGGATTTGCAGGTAAATTTGTTTCCTCTATGCTC 431
consensus_8090#2 N----------------------------------------------------------- 595
consensus_8090#0 TTGCTGCATTTTTCAGACCACCGTTCGGTGAGTGCAACCTGAACTCTTTTGTTACGGGCA 669
consensus_8090#3 TTGCTGCATTTTTCAGACCACCGTTCGGTGAGTGCAACCTGAACTCTTTTGTTACGGGCA 428
consensus_8090#1 TTATTCCACAGTTGAACACAATGTGTAAATTGTGAAAATAAAACTTAATCATTACGATTT 491
consensus_8090#2 ------------------------------------------------------------
consensus_8090#0 TATTGCTGTGTTCCATCGAAGTTGTTTTCACCGAA--CTGAAGTATAAACAATAGTGAAA 727
consensus_8090#3 TATTGCTGTGTTCCATCGAAGTTGTTTTCACCGAA--CTG----GNAAATCCTTGTTCAA 482
consensus_8090#1 TTTCGTTTGTCATGCTCATGCCTCTCTTTCTCAAAACCTTTTTCGTTTCTAAGTTTGCAA 551
consensus_8090#2 ------------------------------------------------------------
consensus_8090#0 AAGGACTGTTATTGCA---GTATCTGACTACTTTCACATGCTACTTCATTTTTATGACAA 784
consensus_8090#3 TGGCTCGGT----------GTACATACCTCCTGAAGAAAACTG--------TAATGACAC 524
consensus_8090#1 GAGTGTTGTTAGGAGAAAGATATTTATACAGTAGAACTTGCTAAGAGGGCCCACTAGGAA 611
consensus_8090#2 ------------------------------------------------------------
consensus_8090#0 AACAAAACATCATGATTCTATGGTTTCCATAACTTTAGACATGCATATTTCGT------- 837
consensus_8090#3 GA----GCATCA-GGTGCTGCTTTCTCCCAAAGTGGGNATTACTAGCTCTGGTTAA---- 575
consensus_8090#1 GTTAGCAAAACAGAACAAAATAATATAGTTGGTGGAACACTTGATTTTTTGTTTTCATAC 671
consensus_8090#2 ------------------------------------------------------------
consensus_8090#0 ------------------------------------------------------------
consensus_8090#3 ------------------------------------------------------------
consensus_8090#1 AGTTCACTTTGTGGTGCAAAATTCAAGCACCCTATTTATCTAGTTCCTCAACTGATTGTC 731
consensus_8090#2 ------------------------------------------------------------
consensus_8090#0 --------------------
consensus_8090#3 --------------------
consensus_8090#1 ACTGAAAACGAATTAGCTTT 751
consensus_8090#2 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||