cluster # 8092

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Oryza sativa
cluster # 8092 cluster # 8092 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8092#0 length = 787 sequences # 1

consensus_8092#1 length = 598 sequences # 4

consensusID : consensus_8092#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 787
fasta sequence

                              [GGGGGCCATTAAATACACTGTGCATCCTATAGCACTTAATGGAGGGTTGCTAACGGAACCCTAATGGCGATGACATTTTTTGGACCAAGTTACTCTTACGATGACATTTCATGGAACTTGCACTGTCGATGCATTTCTTCAAATTGGACGCTTGTCAATGACGTTTCTTTGAATTTTCTCATTAACTTATGTCTGGAACATTTTTTTTAGAATTTTTCATCAAACTTCAAAAAATATTTTAGAACTTTGATAACGGTGTTATCTCTGTCTCTAAGAATTTTCAGCTTAGAATACGATTTGTATAAACAGAAAGAAAACAAATAAATGCTCTCAAGCCCTAATTAGTAAATTAAGTGAACCACATTTGCAATAGTTTACAGTGCTGTTTTTGTTTAACTAATTACACAGGCGATTCCACTCTTAAACTCTATCTACATATGTAGCGCGTGAGGAAGCGGTACGCATGGAAGTGATCATCAGACAGATGGCGGTATCAGACAGATACATTACAATAAATGTATTAATCCAACCGTACATAATGTGTGGCGCAGCGATCTCAGATTGCATATGTATAGCGTACGTACTTAGGTACGTGCGAGCGTATAAATACATATATACAAGCACATGGCTGCTGTTGCGGGTGCGCTAGAATAAATATACAATATCCATGCATGCGNTATCTGTATACATATACAATATTCATGTATGCGNTACTATCGNATACAATATCGATCTGGTCTATATACATATTATCTGGATACATATACAATATCCATGTATGCTTTAC]

[+] EMBL CA764131             [GGGGGCCATTAAATACACTGTGCATCCTATAGCACTTAATGGAGGGTTGCTAACGGAACCCTAATGGCGATGACATTTTTTGGACCAAGTTACTCTTACGATGACATTTCATGGAACTTGCACTGTCGATGCATTTCTTCAAATTGGACGCTTGTCAATGACGTTTCTTTGAATTTTCTCATTAACTTATGTCTGGAACATTTTTTTTAGAATTTTTCATCAAACTTCAAAAAATATTTTAGAACTTTGATAACGGTGTTATCTCTGTCTCTAAGAATTTTCAGCTTAGAATACGATTTGTATAAACAGAAAGAAAACAAATAAATGCTCTCAAGCCCTAATTAGTAAATTAAGTGAACCACATTTGCAATAGTTTACAGTGCTGTTTTTGTTTAACTAATTACACAGGCGATTCCACTCTTAAACTCTATCTACATATGTAGCGCGTGAGGAAGCGGTACGCATGGAAGTGATCATCAGACAGATGGCGGTATCAGACAGATACATTACAATAAATGTATTAATCCAACCGTACATAATGTGTGGCGCAGCGATCTCAGATTGCATATGTATAGCGTACGTACTTAGGTACGTGCGAGCGTATAAATACATATATACAAGCACATGGCTGCTGTTGCGGGTGCGCTAGAATAAATATACAATATCCATGCATGCGNTATCTGTATACATATACAATATTCATGTATGCGNTACTATCGNATACAATATCGATCTGGTCTATATACATATTATCTGGATACATATACAATATCCATGTATGCTTTAC]




>consensus_8092#0
GGGGGCCATTAAATACACTGTGCATCCTATAGCACTTAATGGAGGGTTGCTAACGGAACC
CTAATGGCGATGACATTTTTTGGACCAAGTTACTCTTACGATGACATTTCATGGAACTTG
CACTGTCGATGCATTTCTTCAAATTGGACGCTTGTCAATGACGTTTCTTTGAATTTTCTC
ATTAACTTATGTCTGGAACATTTTTTTTAGAATTTTTCATCAAACTTCAAAAAATATTTT
AGAACTTTGATAACGGTGTTATCTCTGTCTCTAAGAATTTTCAGCTTAGAATACGATTTG
TATAAACAGAAAGAAAACAAATAAATGCTCTCAAGCCCTAATTAGTAAATTAAGTGAACC
ACATTTGCAATAGTTTACAGTGCTGTTTTTGTTTAACTAATTACACAGGCGATTCCACTC
TTAAACTCTATCTACATATGTAGCGCGTGAGGAAGCGGTACGCATGGAAGTGATCATCAG
ACAGATGGCGGTATCAGACAGATACATTACAATAAATGTATTAATCCAACCGTACATAAT
GTGTGGCGCAGCGATCTCAGATTGCATATGTATAGCGTACGTACTTAGGTACGTGCGAGC
GTATAAATACATATATACAAGCACATGGCTGCTGTTGCGGGTGCGCTAGAATAAATATAC
AATATCCATGCATGCGNTATCTGTATACATATACAATATTCATGTATGCGNTACTATCGN
ATACAATATCGATCTGGTCTATATACATATTATCTGGATACATATACAATATCCATGTAT
GCTTTAC

consensusID : consensus_8092#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 598
fasta sequence

                              [TGCATCAGCCCCATCAGCAGAGAACTCGCAGCGGGTTTTAATCC--GGGAGTAT-CCAGGA-CTCAA-GCGCTCCCA-TTACACCAAGGGGCTCCCGATTGGGTGTAATG-TGAACGCATGCCAAACACGTACTGAA-GACAGCCACGGGATAGGGTTCAGCCACCCTGCCAC-GCCACGCGGAGCACTATGGGGTGATCCCAGGGATCAAGATAAGCG-TGTC-TAATTCCCGCCACCACGCAAATAGGCGATTCCACTCTTAAACTCTATCTACATATGTAGCGCGTGAGGAAGCGGTACGCATGGAAGTGATCATCAGACAGAT-GCGGTATCAGACAGATATATTACAATAAATGTATTAATCCAACCGTACATAATGTGTGGCGCAGCGATCTCAGATTGCATATGTATAGCG-TACGTACTTAGGTACGTGCGAGCGTATAAATACATATATACAAGCACATGGCTGCTGTTGCGGGTGCGCTAGAATAAATATACAATATCCATGCATGCGTTATCTGTATACATATAC-ATATTCATGTATGCGTTACTATCGTATAC-ATATCGATCTGTTCTATATACATATTATCTGTATAAAAAAAAAAAA]

[+] EMBL BI813459             [TGCATCAGCCCCATCAGCAGAGAACTCGCAGCGGGTTTTAATCC  GGGAGTAT CCAGGA CTCAA GCGCTCCCA TTACACCAAGGGGCTCCCGATTGGGTGTAATG TGAACGCATGCCAAACACGTACTGAA GACAGCCACGGGATAGGGTTCAGCCACCCTGCCAC GCCACGCGGAGCACTATGGGGTGATCCCAGGGATCAAGATAAGCG TGTCGTAATTCCCGCCACCACGCAAATAGGCGATTCCACTCTTAAACTCTATCTACATATGTAGCGCGTGAGGAAGCGGTACGCATGGAAGTGATCATCAGACAGAT GCGGTATCAGACAGATATATTAC AT AATGTATTAATCC ACCGTACATAATGTGTGGCGCAGCGATCTCAGATTGCATATGTATAGCG TACGTACTTAGGTACGTGCGAGCGTATAAATACATATATACAAGCACATGGCTGCTGTTCCGGGTGCGCTAGAATAAAaaaaaa                                                                                                              ]
[+] EMBL BQ907115             [                                   gTTTAATCCCGGGGAG ATCCCAGTATNTCAAGGCGCTCCCANGTACA CAAGGGGCTCCCGATTGGG GTAATGCTGAA GCA GCC AACA GTACTGAAGGACAGCCACGGGATAGGGTTCAGCCACCC GCCACGGCCACGCGGAGCACTATGGGGTGATCCCAGGGATCAAGATAAGCG TGTC TAATTCCCGCCACCACGCAAATAGGCGATTCCACTCTTAAACTCTATCTACATATGTAGCGCGTGAGGAAGCGGTACGCATGGAAGTGATCATCAGACAGATGGCGGTATCAGACAGATATATTACAATAAATGTATTAATCCAACCGTACATAATGTGTGGCGCAGCGATCTCAGATTGCATATGTATAGCGATACGTACTTAGGTACGTGCGAGCGTATAAATACATATATACAAGCACATGGCTGCTGTTGCGGGTGCGCTAGAATAAATATACAATATCCATGCATGCGTTATCTGTATACATATACAATATTCATGTATGCGTTACTATCGTATACAATATCGATCTGTTCTATATACATATTATCTGTATACATATACAAAA]
[+] EMBL BI812619             [                                                                                                                                                                                                                acAGATAAGCGTTGTC TAATTCCCGCCACCACGCAAATAGGCGATTCCACTCTTAAACTCTATCTACATATGTAGCGCGTGAGGAA CGGTACGCATGGAAGTGATCATCAGACAGAT GCGGTATCAGACAGATATATTACAATAAATGTATTAATCCAACCGTACATAATGTGTGGCGCAGCGATCTCAGATTGCATATGTATAGCG TACGTACTTAGGTACGTGCGAGCGTATAAATACATATATACAAGCACATGGCTGCTGTTGCGGGTGCGCTAGAATAAATATAC ATATCCATGCATGCGTTATCTGTATACATATAC ATATTCATGTATGCGTTACTATCGTATAC ATATCGATCTGTTCTATATACATATTATCTGTATAAAAAAAA    ]
[+] EMBL BI802405             [                                                                                                                                                                                                                                                                                                                                                                                                        CGATCTCAGATTGCATATGTATAGCG TACGTACTTAGGTACGTGCGAGCGTATAAATACATATATACAAGCACATGGCTGCTGTTGCGGGTGCGCTAGAATAAATATAC ATATCCATGCATGCGTTATCTGTATACATATAC ATATTCATGTATGCGTTACTATCGTATAC ATATCGATCTGTTCTATATACATATTATCTGTAAAAAAAAAA    ]




>consensus_8092#1
TGCATCAGCCCCATCAGCAGAGAACTCGCAGCGGGTTTTAATCCGGGAGTATCCAGGACT
CAAGCGCTCCCATTACACCAAGGGGCTCCCGATTGGGTGTAATGTGAACGCATGCCAAAC
ACGTACTGAAGACAGCCACGGGATAGGGTTCAGCCACCCTGCCACGCCACGCGGAGCACT
ATGGGGTGATCCCAGGGATCAAGATAAGCGTGTCTAATTCCCGCCACCACGCAAATAGGC
GATTCCACTCTTAAACTCTATCTACATATGTAGCGCGTGAGGAAGCGGTACGCATGGAAG
TGATCATCAGACAGATGCGGTATCAGACAGATATATTACAATAAATGTATTAATCCAACC
GTACATAATGTGTGGCGCAGCGATCTCAGATTGCATATGTATAGCGTACGTACTTAGGTA
CGTGCGAGCGTATAAATACATATATACAAGCACATGGCTGCTGTTGCGGGTGCGCTAGAA
TAAATATACAATATCCATGCATGCGTTATCTGTATACATATACATATTCATGTATGCGTT
ACTATCGTATACATATCGATCTGTTCTATATACATATTATCTGTATAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8092#0      GGGGGCCATTAAATACACTGTGCATCCTATAGCACTTAATGGAGGGTTGCTAACGGAACC 60
consensus_8092#1      ------------------------------------------------------------
                                                                                  

consensus_8092#0      CTAATGGCGATGACATTTTTTGGACCAAGTTACTCTTACGATGACATTTCATGGAACTTG 120
consensus_8092#1      ------------------------------------------------------------
                                                                                  

consensus_8092#0      CACTGTCGATGCATTTCTTCAAATTGGACGCTTGTCAATGACGTTTCTTTGAATTTTCTC 180
consensus_8092#1      ---------------------------------------------TGCATCAGCCCCATC 15
                                                                   *   * *      **

consensus_8092#0      ATTAACTTATGTCTGGAACATTTTTTTTAGAATTTTTCATCAAACTTCAAAAAATATTTT 240
consensus_8092#1      AGCAGAGAACTCGCAGCGGGTTTTAATCCGGGAGTATC--CAGGACTCAAGCGCTCCCAT 73
                      *  *    *      *    ****  *  *    * **  **    ****    *    *

consensus_8092#0      AGAACTTTGATAACGGTGTTATCTCTGTCTCTAAGAATTTTCAGCTTAGAATACGATTTG 300
consensus_8092#1      TACACC---AAGGGGCTCCCGATTGGGTGTAATGTGAACGCATGCCAAACACGTACTGAA 130
                         **    *    * *      *  ** *      *      **  *  *     *   

consensus_8092#0      TATAAACA-GAAAGAAAACAAATAAATGCTCTCAAGCCCTAATTAGTAAATTAAGTGAAC 359
consensus_8092#1      GACAGCCACGGGATAGGGTTCAGCCACCCTGCCACGCCACGCGGAGCACTATGGGGTGAT 190
                       * *  ** *  * *      *   *  **  ** ***      ** *   *  *   * 

consensus_8092#0      CACATTTGCAATAGTTTACAGTGCTGTTTTTGTTTAACTAATTACACAGGCGATTCCACT 419
consensus_8092#1      CCCAGGGATCA-AGATAAGCGTGTCTAATTCCCGCCACCACGCAAATAGGCGATTCCACT 249
                      * **      * ** * *  ***     **      ** *   * * *************

consensus_8092#0      CTTAAACTCTATCTACATATGTAGCGCGTGAGGAAGCGGTACGCATGGAAGTGATCATCA 479
consensus_8092#1      CTTAAACTCTATCTACATATGTAGCGCGTGAGGAAGCGGTACGCATGGAAGTGATCATCA 309
                      ************************************************************

consensus_8092#0      GACAGATGGCGGTATCAGACAGATACATTACAATAAATGTATTAATCCAACCGTACATAA 539
consensus_8092#1      GACAGATG-CGGTATCAGACAGATATATTACAATAAATGTATTAATCCAACCGTACATAA 368
                      ******** **************** **********************************

consensus_8092#0      TGTGTGGCGCAGCGATCTCAGATTGCATATGTATAGCGTACGTACTTAGGTACGTGCGAG 599
consensus_8092#1      TGTGTGGCGCAGCGATCTCAGATTGCATATGTATAGCGTACGTACTTAGGTACGTGCGAG 428
                      ************************************************************

consensus_8092#0      CGTATAAATACATATATACAAGCACATGGCTGCTGTTGCGGGTGCGCTAGAATAAATATA 659
consensus_8092#1      CGTATAAATACATATATACAAGCACATGGCTGCTGTTGCGGGTGCGCTAGAATAAATATA 488
                      ************************************************************

consensus_8092#0      CAATATCCATGCATGCGNTATCTGTATACATATACAATATTCATGTATGCGNTACTATCG 719
consensus_8092#1      CAATATCCATGCATGCGTTATCTGTATACATATACA-TATTCATGTATGCGTTACTATCG 547
                      ***************** ****************** ************** ********

consensus_8092#0      NATACAATATCGATCTGGTCTATATACATATTATCTGGATACATATACAATATCCATGTA 779
consensus_8092#1      TATACA-TATCGATCTGTTCTATATACATATTATCTGTATAAAAAAAAAAAA-------- 598
                       ***** ********** ******************* *** * * * ** *        

consensus_8092#0      TGCTTTAC 787
consensus_8092#1      --------