cluster # 8098

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Oryza sativa
cluster # 8098 cluster # 8098 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8098#0 length = 824 sequences # 4

consensus_8098#1 length = 249 sequences # 1

consensusID : consensus_8098#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 824
fasta sequence

                              [TTACGACAAGACGTATCATGGAACATTTTATACCCTCCAAAACCGCAGTAAAAACACCAACGATTTGAGAACTAGTCACGCAATTAAATGTTTTTGATTGAAAGAATAAATAATCAGAATACAGTGTGCAGCCATTGGCAGAGCTAATCATGGGAAGAATTCTACATGACCGCCAATATCCTTGCACAACAACTTGGCTTCAGAAGCAAGCTTCCTGCTTCTAAAAATCACCAGGTTTGTCAACCGGTGCTTGGGCTGTGGTTCAAAGGATCTAGCTTCGGCCTCCTTACCAAGC-AGCACCAGCTCCCGGGCCGGCATCACATTCCCCCACCAGAAATCACGCAGGACTTCATGGATGAGCTCCCAGTATCCGCGATCTCGAGGTACTCGGAAAACGCTGCTTCCGTTGGGAGTCCAACAGTAGAGCTCGACCCAATCTCTGCCCATTATCTCCATCAGGCCCTGCACCTGTGGCATGTAATAGTATGGCATAGCGCGCCATGGCAGAGCGAGCTCAGGCTTACCCTTGTTGAACGGGCACTTGACTTCTAGGATCCCACCGTCTGGGTCACACCCTAGAACACCATCAGGTGAAGCTCCGAGCCAGCCAAAGTTGGCCTCAGTGTGCACTGCGAAGCCAAGGGAACCCACTGACCGTCCGGTGATGCTTGTGTACTGCTCTATGGCTACACTTTCATTCACCGTGCCCCAGTTCATGGCAGACCTCGCCGCATCCTCCAACTTGATTTCTGTTGATCCAAATACTTTCTCGCTCCACAGCTCTGACCGTCTGTTGCCAGCCCAGAAGCCCAAGGCAGTGCTGA]

[+] EMBL CB679603             [TTACGACAAGACGTATCATGGAACATTTTATACCCTCCAAAACCGCAGTAAAAACACCAACGATTTGAGAACTAGTCACGCAATTAAATGTTTTTGATTGAAAGAATAAATAATCAGAATACAGTGTGCAGCCATTGGCAGAGCTAATCATGGGAAGAATTCTACATGACCGCCAATATCCTTGCACAACAACTTGGCTTCAGAAGCAAGCTTCCTGCTTCTAAAAATCACCAGGTTTGTCAACCGGTGCTTGGGCTGTGGTTCAAAGGATCTAGCTTCGGCCTCCTTACCAAGC AGCACCAGCTCCCGGGCCGGCATCACATTCCCCCACCAGAAATCACGCAGGACTTCATGGATGAGCTCCCAGTATCCGCGATCTCGAGGTACTCGGAAAACGCTGCTTCCGTTGGGAGTCCAACAGTAGAGCTCGACCCAATCTCTGCCCATTATCTCCATCAGGCCCTGCACCTGTGGCATGTAATAGTATGGCATAGCGCGCCATGGCAGAGCGAGCTCAGGCTTACCCTTGTTGAACGGGCACTTGACTTCTAGGATCCCACCGTCTGGGTCACACCCTAGAACACCATCAGGTGAAGCTCCGAGCCAGCCAAAGTTGGCCTCAGTGTGCACTGCGAAGCCAAGGGAACCCACTGACCGTCCGGTGATGCTTGTGTACTGCTCTATGGCTACACTTTCATTCACCGTGCCCCAGTTCATGGCAGACCTCGCCGCATCCTCCAACTTGATTTCTGTTGATCCAAATACTTTCTCGCTC                                                 ]
[-] EMBL AK058766             [                                                                            cattCAATTCAATGTTTTTGATTGAAAGAATAAATAATCTGAATACAGTGTGCAGTCATTGGCAGAGCTACTCATGGGAAGAATTCTACATGACCGCCAATATCCTTGCACAACAACTTGGCTTCAGAAGCTAGCTTCCTGCTTCTAAAAATCACCAGGTTTGTCGACCGGTGCTTGGGCTGTGGTTCAAAGGATCTAGCTTCGGCCTCCTTCCCCAGC AGCACCAGCTCCCGGGCCGGCATCACATTCCCCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL OSC21631             [                                                                                                                                                                                                                                                          TTGGGCTGTGGTTCAAAGGATCTAGCTTCGGCCTCCTTACCAAGCAAGCACCAGCTCCCGGGCCGGCATCACATTCCCCCACCAGAAATCACGCAGGACTTCATGGATGAGCTCCCAGTATCCGCGATCTCGAGGTACTCGGAAAACGCTGCTTCCGTTGGGAGTCCAACAGTAGAGCTCGACCCAAACTCTGCCCATTATCTCCATCAGGCCCTGCACCTGTGGCATGTAATAGTATGGCATAGCGCGCCATGGCAGAGCGAGCTCAGGCTTACCCTTGTTGAACGGGCACTTGACTTCTAGGATCCCA                                                                                                                                                                                                                                                                         ]
[-] EMBL BI306663             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TAATAGTATGGCATAGCGCGCCATGGCAGAGCGAGCTCAGGCTTACCC TGTTGAACGGGCACTTGACTTCTAGGATCCCACCGTCTGGGTCACACCCTAGAACACCATCAGGT AAGCTCCGAGCCACCCANAGTTGGCCTCAGTGTGCACTGCGAAGCCAAGGGAACCCACTGACCGTCCGGTGATGCTTGTGTACTGCTCTATGGCTACACTTTCATTCACCGTGCCCCAGTTCATGGCAGACCTCGCCGCATCCTCCAACTTGATTTCTGTTGATCCAAATACTTTCTCGCTCCACAGCTCTGACCGTCTGTTGCCAGCCCAGAAGCCCAAGGCAGTGCTGA]




>consensus_8098#0
TTACGACAAGACGTATCATGGAACATTTTATACCCTCCAAAACCGCAGTAAAAACACCAA
CGATTTGAGAACTAGTCACGCAATTAAATGTTTTTGATTGAAAGAATAAATAATCAGAAT
ACAGTGTGCAGCCATTGGCAGAGCTAATCATGGGAAGAATTCTACATGACCGCCAATATC
CTTGCACAACAACTTGGCTTCAGAAGCAAGCTTCCTGCTTCTAAAAATCACCAGGTTTGT
CAACCGGTGCTTGGGCTGTGGTTCAAAGGATCTAGCTTCGGCCTCCTTACCAAGCAGCAC
CAGCTCCCGGGCCGGCATCACATTCCCCCACCAGAAATCACGCAGGACTTCATGGATGAG
CTCCCAGTATCCGCGATCTCGAGGTACTCGGAAAACGCTGCTTCCGTTGGGAGTCCAACA
GTAGAGCTCGACCCAATCTCTGCCCATTATCTCCATCAGGCCCTGCACCTGTGGCATGTA
ATAGTATGGCATAGCGCGCCATGGCAGAGCGAGCTCAGGCTTACCCTTGTTGAACGGGCA
CTTGACTTCTAGGATCCCACCGTCTGGGTCACACCCTAGAACACCATCAGGTGAAGCTCC
GAGCCAGCCAAAGTTGGCCTCAGTGTGCACTGCGAAGCCAAGGGAACCCACTGACCGTCC
GGTGATGCTTGTGTACTGCTCTATGGCTACACTTTCATTCACCGTGCCCCAGTTCATGGC
AGACCTCGCCGCATCCTCCAACTTGATTTCTGTTGATCCAAATACTTTCTCGCTCCACAG
CTCTGACCGTCTGTTGCCAGCCCAGAAGCCCAAGGCAGTGCTGA

consensusID : consensus_8098#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [AANTTTTTTTTCACGCAATTAAATGTTTTTGATTGAAAGAATAAATAATCAGAATACAGTGTGCAGCCATTGGCAGAGCTAATCATGGGAAGAATTCTACATNACCGCCAATATCCTTGCACAACAACTTGGCTTCANAAGCAAGCTTCCTGCTTCTAAAAATCACCAGGNTNGTCAACCGGTGCTTGGGCTGTGGTTCAAAGGGTCNAGCTTCNGCCTCCTTACCAAGCAGCACCAGCTCCCGGGCCG]

[-] EMBL AU082909             [AANTTTTTTTTCACGCAATTAAATGTTTTTGATTGAAAGAATAAATAATCAGAATACAGTGTGCAGCCATTGGCAGAGCTAATCATGGGAAGAATTCTACATNACCGCCAATATCCTTGCACAACAACTTGGCTTCANAAGCAAGCTTCCTGCTTCTAAAAATCACCAGGNTNGTCAACCGGTGCTTGGGCTGTGGTTCAAAGGGTCNAGCTTCNGCCTCCTTACCAAGCAGCACCAGCTCCCGGGCCG]




>consensus_8098#1
AANTTTTTTTTCACGCAATTAAATGTTTTTGATTGAAAGAATAAATAATCAGAATACAGT
GTGCAGCCATTGGCAGAGCTAATCATGGGAAGAATTCTACATNACCGCCAATATCCTTGC
ACAACAACTTGGCTTCANAAGCAAGCTTCCTGCTTCTAAAAATCACCAGGNTNGTCAACC
GGTGCTTGGGCTGTGGTTCAAAGGGTCNAGCTTCNGCCTCCTTACCAAGCAGCACCAGCT
CCCGGGCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8098#0      TTACGACAAGACGTATCATGGAACATTTTATACCCTCCAAAACCGCAGTAAAAACACCAA 60
consensus_8098#1      ------------------------------------------------------------
                                                                                  

consensus_8098#0      CGATTTGAGAACTAGTCACGCAATTAAATGTTTTTGATTGAAAGAATAAATAATCAGAAT 120
consensus_8098#1      -AANTT----TTTTTTCACGCAATTAAATGTTTTTGATTGAAAGAATAAATAATCAGAAT 55
                        * **      *  *********************************************

consensus_8098#0      ACAGTGTGCAGCCATTGGCAGAGCTAATCATGGGAAGAATTCTACATGACCGCCAATATC 180
consensus_8098#1      ACAGTGTGCAGCCATTGGCAGAGCTAATCATGGGAAGAATTCTACATNACCGCCAATATC 115
                      *********************************************** ************

consensus_8098#0      CTTGCACAACAACTTGGCTTCAGAAGCAAGCTTCCTGCTTCTAAAAATCACCAGGTTTGT 240
consensus_8098#1      CTTGCACAACAACTTGGCTTCANAAGCAAGCTTCCTGCTTCTAAAAATCACCAGGNTNGT 175
                      ********************** ******************************** * **

consensus_8098#0      CAACCGGTGCTTGGGCTGTGGTTCAAAGGATCTAGCTTCGGCCTCCTTACCAAGCAGCAC 300
consensus_8098#1      CAACCGGTGCTTGGGCTGTGGTTCAAAGGGTCNAGCTTCNGCCTCCTTACCAAGCAGCAC 235
                      ***************************** ** ****** ********************

consensus_8098#0      CAGCTCCCGGGCCGGCATCACATTCCCCCACCAGAAATCACGCAGGACTTCATGGATGAG 360
consensus_8098#1      CAGCTCCCGGGCCG---------------------------------------------- 249
                      **************                                              

consensus_8098#0      CTCCCAGTATCCGCGATCTCGAGGTACTCGGAAAACGCTGCTTCCGTTGGGAGTCCAACA 420
consensus_8098#1      ------------------------------------------------------------
                                                                                  

consensus_8098#0      GTAGAGCTCGACCCAATCTCTGCCCATTATCTCCATCAGGCCCTGCACCTGTGGCATGTA 480
consensus_8098#1      ------------------------------------------------------------
                                                                                  

consensus_8098#0      ATAGTATGGCATAGCGCGCCATGGCAGAGCGAGCTCAGGCTTACCCTTGTTGAACGGGCA 540
consensus_8098#1      ------------------------------------------------------------
                                                                                  

consensus_8098#0      CTTGACTTCTAGGATCCCACCGTCTGGGTCACACCCTAGAACACCATCAGGTGAAGCTCC 600
consensus_8098#1      ------------------------------------------------------------
                                                                                  

consensus_8098#0      GAGCCAGCCAAAGTTGGCCTCAGTGTGCACTGCGAAGCCAAGGGAACCCACTGACCGTCC 660
consensus_8098#1      ------------------------------------------------------------
                                                                                  

consensus_8098#0      GGTGATGCTTGTGTACTGCTCTATGGCTACACTTTCATTCACCGTGCCCCAGTTCATGGC 720
consensus_8098#1      ------------------------------------------------------------
                                                                                  

consensus_8098#0      AGACCTCGCCGCATCCTCCAACTTGATTTCTGTTGATCCAAATACTTTCTCGCTCCACAG 780
consensus_8098#1      ------------------------------------------------------------
                                                                                  

consensus_8098#0      CTCTGACCGTCTGTTGCCAGCCCAGAAGCCCAAGGCAGTGCTGA 824
consensus_8098#1      --------------------------------------------