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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_810#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence
[GTTCCGGTTTTGCCATCTNTGATCAAATACGCTGTTGAACTGAGGCTGACCGAGANCCAATTTTTGAGCATATTCAACTGTCGGTAGAATAACATATACAGAGACCTGGGGTGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCTCCTGGAATGCAGTTCTTCAGTTTGCTTTTGCCGGTGGTTCTGACACATCCNCACTTGCCCCATAACCATGAATTTGATCACAGTAGTATACCCCGGAACACNCGACCATGACCCGGTTATTGGTTGGTGCAAACTTTACCNGAGGAAGAGAAGCAGACTGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTGATCACTGCTGCCCTCTCTTCAGTTGCAAGGACATCCACTGGTAACCATGCAGGACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACCCAGAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCAGCCCTGAAGCGGCGAAGCTGAAGGAATTGCTTGGACTGTACCACCGGCTCTAAATATATTTCAGCGCTCGTTTTCTGTCGCTTGAACTTACCAGAAATCTGTCATAAAAATAATTGACCATCCAACTTTTG]
[+] EMBL BM037828 [GTTCCGGTTTTGCCATCTNTGATCAAATACGCTGTTGAACTGAGGCTGACCGAGANCCAATTTTTGAGCATATTCAACTGTCGGTAGAATAACATATACAGAGACCTGGGGTGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCTCCTGGAATGCAGTTCTTCAGTTTGCTTTTGCCGGTGGTTCTGACACATCCNCACTTGCCCCATAACCATGAATTTGATCACAGTAGTATACCCCGGAACACNCGACCATGACCCGGTTATTGGTTGGTGCAAACTTTACCNGAGGAAGAGAAGCAGACTGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTGATCACTGCTGCCCTCTCTTCAGTTGCAAGGACATCCACTGGTAACCATGCAGGACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACCCAGAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCAGCCCTGAAGCGGCGAAGCTGAAGGAATTGCTTGGACTGTACCACCGGCTCTAAATATATTTCAGCGCTCGTTTTCTGTCGCTTGAACTTACCAGAAATCTGTCATAAAAATAATTGACCATCCAACTTTTG]
consensusID : consensus_810#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[CGAGGAATGCATTTTTTGATGCNTTATTCAAAGCTGTCGGTNGCATAAACATNATNGCCGAAGNCCTGGGNGTGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCNCCTGGAATGGCCGTTCTTCCGTTTGCTTTTGGCGGTGGTTCTGACAATCCACACTTGCCCCATAACCATGAATTTGATCAAGTCGTATACACCGGNACACACGACAATGACACGGTTATTGGTTGGTGGCAAACTTTACCNGAGGAAGAGAAGCAGACTGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCNCTGATCACTGCTGCCCTCTCTTCAGTTGCAAGGACATCCATGGTAACCATGCAGGACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCNGCTACACAGAAAGGGNACTGGNGATGGNGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCAGCCCTGAAGCGGCGAAGCTGAAGGAATTGCTTGGACTGTACAACCGGCTCTAAATATATTTCAGCGCTCGTTTTCTGTCGCTTGAACTTACAGAAATCTGTCATAAAAATAATTGAGCNATGCAAACATTTTGGCTGCAAAAAA]
[+] EMBL AU030760 [CGAGGAATGCATTTTTTGATGCNTTATTCAAAGCTGTCGGTNGCATAAACATNATNGCCGAAGNCCTGGGNGTGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCNCCTGGAATGGCCGTTCTTCCGTTTGCTTTTGGCGGTGGTTCTGACAATCCACACTTGCCCCATAACCATGAATTTGATCAAGTCGTATACACCGGNACACACGACAATGACACGGTTATTGGTTGGTGGCAAACTTTACCNGAGGAAGAGAAGCAGACTGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCNCTGATCACTGCTGCCCTCTCTTCAGTTGCAAGGACATCCATGGTAACCATGCAGGACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCNGCTACACAGAAAGGGNACTGGNGATGGNGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCAGCCCTGAAGCGGCGAAGCTGAAGGAATTGCTTGGACTGTACAACCGGCTCTAAATATATTTCAGCGCTCGTTTTCTGTCGCTTGAACTTACAGAAATCTGTCATAAAAATAATTGAGCNATGCAAACATTTTGGCTGCAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_810#0 GTTCCGGTTTTGCCATCTNTGATCAAATACGCTGTTGAACTGAGGCTGACCGAGANCCAA 60
consensus_810#1 ----------------------------------------------CGA--GGAATGCAT 12
** * * **
consensus_810#0 TTTTTGA-GCAT-ATTCAA--CTGTCGGTAGAATAA----CATATACAGAGACCTGGGG- 111
consensus_810#1 TTTTTGATGCNTTATTCAAAGCTGTCGGTNGCATAAACATNATNGCCGAAGNCCTGGGNG 72
******* ** * ****** ******** * **** ** * ** ******
consensus_810#0 TGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCTCCTGGAATG-CAGTTC 170
consensus_810#1 TGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCNCCTGGAATGGCCGTTC 132
******************************************* ********* * ****
consensus_810#0 TTCAGTTTGCTTTTGCCGGTGGTTCTGACACATCCNCACTTGCCCCATAACCATGAATTT 230
consensus_810#1 TTCCGTTTGCTTTTGGCGGTGGTTCTGACA-ATCCACACTTGCCCCATAACCATGAATTT 191
*** *********** ************** **** ************************
consensus_810#0 GATCACAGTAGTATACCCCGGAACACNCGACCATGACCCGGTTATTGGTTGGTG-CAAAC 289
consensus_810#1 GATCA-AGTCGTATACACCGGNACACACGACAATGACACGGTTATTGGTTGGTGGCAAAC 250
***** *** ****** **** **** **** ***** **************** *****
consensus_810#0 TTTACCNGAGGAAGAGAAGCAGACTGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGA 349
consensus_810#1 TTTACCNGAGGAAGAGAAGCAGACTGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGA 310
************************************************************
consensus_810#0 AATCTCATGGGCACTGATCACTGCTGCCCTCTCTTCAGTTGCAAGGACATCCACTGGTAA 409
consensus_810#1 AATCTCATGGGCNCTGATCACTGCTGCCCTCTCTTCAGTTGCAAGGACATCCA-TGGTAA 369
************ **************************************** ******
consensus_810#0 CCATGCAGGACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACCCAGA 469
consensus_810#1 CCATGCAGGACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCNGCTACACAGA 429
************************************************* ***** ****
consensus_810#0 AAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCAGCCCTGAAG 529
consensus_810#1 AAGGGNACTGGNGATGGNGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCAGCCCTGAAG 489
***** ***** ***** ******************************************
consensus_810#0 CGGCGAAGCTGAAGGAATTGCTTGGACTGTACCACCGGCTCTAAATATATTTCAGCGCTC 589
consensus_810#1 CGGCGAAGCTGAAGGAATTGCTTGGACTGTACAACCGGCTCTAAATATATTTCAGCGCTC 549
******************************** ***************************
consensus_810#0 GTTTTCTGTCGCTTGAACTTACCAGAAATCTGTCATAAAAATAATTGA-CCATCCAAC-- 646
consensus_810#1 GTTTTCTGTCGCTTGAACTTAC-AGAAATCTGTCATAAAAATAATTGAGCNATGCAAACA 608
********************** ************************* * ** ***
consensus_810#0 TTTTG----------- 651
consensus_810#1 TTTTGGCTGCAAAAAA 624
*****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||