These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_810#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [GTTCCGGTTTTGCCATCTNTGATCAAATACGCTGTTGAACTGAGGCTGACCGAGANCCAATTTTTGAGCATATTCAACTGTCGGTAGAATAACATATACAGAGACCTGGGGTGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCTCCTGGAATGCAGTTCTTCAGTTTGCTTTTGCCGGTGGTTCTGACACATCCNCACTTGCCCCATAACCATGAATTTGATCACAGTAGTATACCCCGGAACACNCGACCATGACCCGGTTATTGGTTGGTGCAAACTTTACCNGAGGAAGAGAAGCAGACTGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTGATCACTGCTGCCCTCTCTTCAGTTGCAAGGACATCCACTGGTAACCATGCAGGACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACCCAGAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCAGCCCTGAAGCGGCGAAGCTGAAGGAATTGCTTGGACTGTACCACCGGCTCTAAATATATTTCAGCGCTCGTTTTCTGTCGCTTGAACTTACCAGAAATCTGTCATAAAAATAATTGACCATCCAACTTTTG] [+] EMBL BM037828 [GTTCCGGTTTTGCCATCTNTGATCAAATACGCTGTTGAACTGAGGCTGACCGAGANCCAATTTTTGAGCATATTCAACTGTCGGTAGAATAACATATACAGAGACCTGGGGTGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCTCCTGGAATGCAGTTCTTCAGTTTGCTTTTGCCGGTGGTTCTGACACATCCNCACTTGCCCCATAACCATGAATTTGATCACAGTAGTATACCCCGGAACACNCGACCATGACCCGGTTATTGGTTGGTGCAAACTTTACCNGAGGAAGAGAAGCAGACTGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCACTGATCACTGCTGCCCTCTCTTCAGTTGCAAGGACATCCACTGGTAACCATGCAGGACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACCCAGAAAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCAGCCCTGAAGCGGCGAAGCTGAAGGAATTGCTTGGACTGTACCACCGGCTCTAAATATATTTCAGCGCTCGTTTTCTGTCGCTTGAACTTACCAGAAATCTGTCATAAAAATAATTGACCATCCAACTTTTG] consensusID : consensus_810#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CGAGGAATGCATTTTTTGATGCNTTATTCAAAGCTGTCGGTNGCATAAACATNATNGCCGAAGNCCTGGGNGTGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCNCCTGGAATGGCCGTTCTTCCGTTTGCTTTTGGCGGTGGTTCTGACAATCCACACTTGCCCCATAACCATGAATTTGATCAAGTCGTATACACCGGNACACACGACAATGACACGGTTATTGGTTGGTGGCAAACTTTACCNGAGGAAGAGAAGCAGACTGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCNCTGATCACTGCTGCCCTCTCTTCAGTTGCAAGGACATCCATGGTAACCATGCAGGACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCNGCTACACAGAAAGGGNACTGGNGATGGNGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCAGCCCTGAAGCGGCGAAGCTGAAGGAATTGCTTGGACTGTACAACCGGCTCTAAATATATTTCAGCGCTCGTTTTCTGTCGCTTGAACTTACAGAAATCTGTCATAAAAATAATTGAGCNATGCAAACATTTTGGCTGCAAAAAA] [+] EMBL AU030760 [CGAGGAATGCATTTTTTGATGCNTTATTCAAAGCTGTCGGTNGCATAAACATNATNGCCGAAGNCCTGGGNGTGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCNCCTGGAATGGCCGTTCTTCCGTTTGCTTTTGGCGGTGGTTCTGACAATCCACACTTGCCCCATAACCATGAATTTGATCAAGTCGTATACACCGGNACACACGACAATGACACGGTTATTGGTTGGTGGCAAACTTTACCNGAGGAAGAGAAGCAGACTGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGAAATCTCATGGGCNCTGATCACTGCTGCCCTCTCTTCAGTTGCAAGGACATCCATGGTAACCATGCAGGACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCNGCTACACAGAAAGGGNACTGGNGATGGNGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCAGCCCTGAAGCGGCGAAGCTGAAGGAATTGCTTGGACTGTACAACCGGCTCTAAATATATTTCAGCGCTCGTTTTCTGTCGCTTGAACTTACAGAAATCTGTCATAAAAATAATTGAGCNATGCAAACATTTTGGCTGCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_810#0 GTTCCGGTTTTGCCATCTNTGATCAAATACGCTGTTGAACTGAGGCTGACCGAGANCCAA 60 consensus_810#1 ----------------------------------------------CGA--GGAATGCAT 12 ** * * ** consensus_810#0 TTTTTGA-GCAT-ATTCAA--CTGTCGGTAGAATAA----CATATACAGAGACCTGGGG- 111 consensus_810#1 TTTTTGATGCNTTATTCAAAGCTGTCGGTNGCATAAACATNATNGCCGAAGNCCTGGGNG 72 ******* ** * ****** ******** * **** ** * ** ****** consensus_810#0 TGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCTCCTGGAATG-CAGTTC 170 consensus_810#1 TGATAACAGAAGATGTTGTTGACCTAAGGAAGTCTATTGAGGCNCCTGGAATGGCCGTTC 132 ******************************************* ********* * **** consensus_810#0 TTCAGTTTGCTTTTGCCGGTGGTTCTGACACATCCNCACTTGCCCCATAACCATGAATTT 230 consensus_810#1 TTCCGTTTGCTTTTGGCGGTGGTTCTGACA-ATCCACACTTGCCCCATAACCATGAATTT 191 *** *********** ************** **** ************************ consensus_810#0 GATCACAGTAGTATACCCCGGAACACNCGACCATGACCCGGTTATTGGTTGGTG-CAAAC 289 consensus_810#1 GATCA-AGTCGTATACACCGGNACACACGACAATGACACGGTTATTGGTTGGTGGCAAAC 250 ***** *** ****** **** **** **** ***** **************** ***** consensus_810#0 TTTACCNGAGGAAGAGAAGCAGACTGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGA 349 consensus_810#1 TTTACCNGAGGAAGAGAAGCAGACTGTGTTCAAGTATCTGCCTGAGGCTAATAGGACTGA 310 ************************************************************ consensus_810#0 AATCTCATGGGCACTGATCACTGCTGCCCTCTCTTCAGTTGCAAGGACATCCACTGGTAA 409 consensus_810#1 AATCTCATGGGCNCTGATCACTGCTGCCCTCTCTTCAGTTGCAAGGACATCCA-TGGTAA 369 ************ **************************************** ****** consensus_810#0 CCATGCAGGACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCAGCTACCCAGA 469 consensus_810#1 CCATGCAGGACATTCTTGGCCTCGACAGTTCTGCTAGAATGAATACTCCNGCTACACAGA 429 ************************************************* ***** **** consensus_810#0 AAGGGAACTGGAGATGGAGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCAGCCCTGAAG 529 consensus_810#1 AAGGGNACTGGNGATGGNGGATGCCGAGCTCTGTCAGCTTCGACAGCCTCAGCCCTGAAG 489 ***** ***** ***** ****************************************** consensus_810#0 CGGCGAAGCTGAAGGAATTGCTTGGACTGTACCACCGGCTCTAAATATATTTCAGCGCTC 589 consensus_810#1 CGGCGAAGCTGAAGGAATTGCTTGGACTGTACAACCGGCTCTAAATATATTTCAGCGCTC 549 ******************************** *************************** consensus_810#0 GTTTTCTGTCGCTTGAACTTACCAGAAATCTGTCATAAAAATAATTGA-CCATCCAAC-- 646 consensus_810#1 GTTTTCTGTCGCTTGAACTTAC-AGAAATCTGTCATAAAAATAATTGAGCNATGCAAACA 608 ********************** ************************* * ** *** consensus_810#0 TTTTG----------- 651 consensus_810#1 TTTTGGCTGCAAAAAA 624 ***** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||