These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8100#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 2377 fasta sequence [AGGGAGCATGGAGCCAAACAGAAAGTCTGTTTCGCCATTAATGGCTCTCCCACTCACCTCTCTCTCTAGAAACACATAGCCAAGATCATCATCATCAGCAACCATATTAGTGAATTAAGAGGAAATCAAAGCAGTAGCAGCCCAGGAACAGCATCATCAAAGCAGTAAGAGAGGGTAGTTTGCAAGTGGTGCTAGTGTCCAAGGCGCCATCACGAACTAGAGTCCTAGATAGAGCTAGAGGTCATGCATGGGGTAGTTGCTGGTGTGGAAGAGGAAGAGAGAAAGTGAGTGAGAGAGAGAGAGGTGGCGCCTTGGCTGCTAGCCTCATAGAGTCAAAGAGTATTTAGGACCTTGCAGCTATGGCTATAGATAGATAGAGGCACATACGCATACGTATATAGCTTGCTACCTTGCCTTCTCTGTGTATGTTTCGGCGTGTGTTCTTCTTCTTCTCTTCTTCCTCCTCTCGATTCTGAAGAGGTTAGCTTTGATTTGATCGATCGATGATGAGCGGGAGCGAGAGCCAGCAGGAGAGGGAGCATCGTCAGCAGCAGGAGATGAACATCTCCTTTGGGATGATGATGAACCATGGCCACCATCACTACGGACAGCATCAGCAGCAGCACCATCATCATCCGCCTCCGTCATCGTCTTCCTCTTCCTCCATGCATGCCGCTGCCGCAAGCTTCAT------CAAGGAGGCATCTGCAGGAGCTTATGATCATCTGGGGGAGCTGGACCAGGCCTTGTTCATGTACCTGGATCATGGCAGCCATGCGGCGTCGCACCAAGAACAAAGGCAGACCCTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCATCACCCAAGGGAGAGATTAGTTTAGTGCTGTCCCCAGCAGCTGTGGGAACCAAGATGGCGAGGTCACCTGATCATCACCACCACCATCAGCAGCAAGCAGCAGCAGCCATGGAGGAGTTGGCGACAGGGAGCAGGAGACAGGATCACCACCACCTGCAGCACCAACCTTTCGCTGCTGAGCCTGCAGGGATCAACAGGGATGTGAAGCCGGTGACAGCCAAGAAGGATCACAGGAGGGGTGTATCTACTGGTGAACGCGACCCAAAGACGCTGAGGAGGCTAGCCCAGAACAGGGAGGCAGCAAGGAAAAGCAGGCTAAGGAAGAAGGCTTACATCCAGCAGCTGGAGTCCAGCAGGATCAGGCTTGCTCAGCTCGAACAGGAACTGCACACCGCGAGAGCCCAGGGGGTGTTCTTCCCCGGCAGCGGCGGGCTGATCGGCGAGGGAGGCAGCGGGAAGGGGGTCCTGCTGGGCGGGATCGATGGCGTCGGCGGCGGCGGCGGCGGGGGGCTGAGCTCGGAGGCGGCGATGTTCGACGTGGAGTACGGGAGGTGGCAGGAGGAGCACCACCGGCTGATGTACGAGCTGCGGGCGGCGCTGCAGCAGCAGCTGCCGGAGGGGGAGCTGCAGGTGTACGTGGAGAGCTGCCTGGCGCACCACGACGAGGTCGCCGCCATCAAGGACGGCGCCATCAGGGGCGACGTCTTCCACCTCATCTCCGGCGTCTGGATGAGCCCAGCCGAGCGCTGCTTCCTCTGGCTCGGCGGCTTCCGCCCCTCCGAGGTCATCAAGATGCTGGTGGCGCACGTGGAGCCGCTGACGGAGCAGCAGATCGTGGGGGTGTACGGGCTGCAGCAGTCGGCGCTGGAGACGGAGGAGGCGCTGACGCAGGGCCTCGACGCGCTCTACCAGTCGCTCTCCGACACCGTCGTCTCCGACGCCCTCAGCTGCCCTTCCAACGTCGCCAACTAC--GGGCCAGATGGCCGTCGCCATCAACAAGCTCTCCACCCTCGAGGGCTTCGTCCGCCAGGCTGAGAACCTGAGGCAGCAGACGCTGCACCGGCTGCAGCAGGTGCTGACGACGAGGCAGATGGCGCGGTCGCTGCTCGCCGTCTCCGACTACTTCCACCGCCTCCGCACCCTCAGCTCCCTCTGGGTCACCCGCCCCAGGCACCCGCCTCACGACCACCAGCCGCCGCCGCACTCCGCCGCCCCCCACACCTGAGATCACCGCCGCCGGCAACGCATGCAAACACCGTAGCTCTTAGCTAGCAGCTTAGAGATATCGAGAGATCAGAAATTAAGCGATCGATCGAGAGAGGACGACGACTGTGAAACCCCCCATGGAATGGATGGATGGATGGATGGATGAACCGATGTGTACTGTGTTTGGGCATTAACCCTTTGATGTAAACAAAGTAGGCGTGTTTGACTGCTTGGTCGATCGATCGAGATCTCTGTCGATAGGATCTTGAATTAGCGGATCTTACCTCAGCAACTGGTTCATCAAGTGTTGATGCAGCTCAATCAAACTT] [+] EMBL AK100210 [AGGGAGCATGGAGCCAAACAGAAAGTCTGTTTCGCCATTAATGGCTCTCCCACTCACCTCTCTCTCTAGAAACACATAGCCAAGATCATCATCATCAGCAACCATATTAGTGAATTAAGAGGAAATCAAAGCAGTAGCAGCCCAGGAACAGCATCATCAAAGCAGTAAGAGAGGGTAGTTTGCAAGTGGTGCTAGTGTCCAAGGCGCCATCACGAACTAGAGTCCTAGATAGAGCTAGAGGTCATGCATGGGGTAGTTGCTGGTGTGGAAGAGGAAGAGAGAAAGTGAGTGAGAGAGAGAGAGGTGGCGCCTTGGCTGCTAGCCTCATAGAGTCAAAGAGTATTTAGGACCTTGCAGCTATGGCTATAGATAGATAGAGGCACATACGCATACGTATATAGCTTGCTACCTTGCCTTCTCTGTGTATGTTTCGGCGTGTGTTCTTCTTCTTCTCTTCTTCCTCCTCTCGATTCTGAAGAGGTTAGCTTTGATTTGATCGATCGATGATGAGCGGGAGCGAGAGCCAGCAGGAGAGGGAGCATCGTCAGCAGCAGGAGATGAACATCTCCTTTGGGATGATGATGAACCATGGCCACCATCACTACGGACAGCATCAGCAGCAGCACCATCATCATCCGCCTCCGTCATCGTCTTCCTCTTCCTCCATGCATGCCGCTGCCGCAAGCTTCAT CAAGGAGGCATCTGCAGGAGCTTATGATCATCTGGGGGAGCTGGACCAGGCCTTGTTCATGTACCTGGATCATGGCAGCCATGCGGCGTCGCACCAAGAACAAAGGCAGACCCTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCATCACCCAAGGGAGAGATTAGTTTAGTGCTGTCCCCAGCAGCTGTGGGAACCAAGATGGCGAGGTCACCTGATCATCACCACCACCATCAGCAGCAAGCAGCAGCAGCCATGGAGGAGTTGGCGACAGGGAGCAGGAGACAGGATCACCACCACCTGCAGCACCAACCTTTCGCTGCTGAGCCTGCAGGGATCAACAGGGATGTGAAGCCGGTGACAGCCAAGAAGGATCACAGGAGGGGTGTATCTACTGGTGAACGCGACCCAAAGACGCTGAGGAGGCTAGCCCAGAACAGGGAGGCAGCAAGGAAAAGCAGGCTAAGGAAGAAGGCTTACATCCAGCAGCTGGAGTCCAGCAGGATCAGGCTTGCTCAGCTCGAACAGGAACTGCACACCGCGAGAGCCCAGGGGGTGTTCTTCCCCGGCAGCGGCGGGCTGATCGGCGAGGGAGGCAGCGGGAAGGGGGTCCTGCTGGGCGGGATCGATGGCGTCGGCGGCGGCGGCGGCGGGGGGCTGAGCTCGGAGGCGGCGATGTTCGACGTGGAGTACGGGAGGTGGCAGGAGGAGCACCACCGGCTGATGTACGAGCTGCGGGCGGCGCTGCAGCAGCAGCTGCCGGAGGGGGAGCTGCAGGTGTACGTGGAGAGCTGCCTGGCGCACCACGACGAGGTCGCCGCCATCAAGGACGGCGCCATCAGGGGCGACGTCTTCCACCTCATCTCCGGCGTCTGGATGAGCCCAGCCGAGCGCTGCTTCCTCTGGCTCGGCGGCTTCCGCCCCTCCGAGGTCATCAAGATGCTGGTGGCGCACGTGGAGCCGCTGACGGAGCAGCAGATCGTGGGGGTGTACGGGCTGCAGCAGTCGGCGCTGGAGACGGAGGAGGCGCTGACGCAGGGCCTCGACGCGCTCTACCAGTCGCTCTCCGACACCGTCGTCTCCGACGCCCTCAGCTGCCCTTCCAACGTCGCCAACTAC GGGCCAGATGGCCGTCGCCATCAACAAGCTCTCCACCCTCGAGGGCTTCGTCCGCCAGGCTGAGAACCTGAGGCAGCAGACGCTGCACCGGCTGCAGCAGGTGCTGACGACGAGGCAGATGGCGCGGTCGCTGCTCGCCGTCTCCGACTACTTCCACCGCCTCCGCACCCTCAGCTCCCTCTGGGTCACCCGCCCCAGGCACCCGCCTCACGACCACCAGCCGCCGCCGCACTCCGCCGCCCCCCACACCTGAGATCACCGCCGCCGGCAACGCATGCAAACACCGTAGCTCTTAGCTAGCAGCTTAGAGATATCGAGAGATCAGAAATTAAGCGATCGATCGAGAGAGGACGACGACTGTGAAACCCCCCATGGAATGGATGGATGGATGGATGGATGAACCGATGTGTACTGTGTTTGGGCATTAACCCTTTGATGTAAACAAAGTAGGCGTGTTTGACTGCTTGGTCGATCGATCGAGATCTCTGTCGATAGGATCTTGAATTAGCGGATCTTACCTCAGCAACTGGTTCATCAAGTGTTGATGCAGCTCAATCAAACTT] [+] EMBL AK103174 [ GCACATACGCATACGTATATAGCTTGCTACCTTGCCTTCTCTGTGTATGTTTCGGCGTGTGTTCTTCTTCTTCTCTTCTTCCTCCTCTCGATTCTGAAGAGGTTAGCTTTGATTTGATCGATCGATGATGAGCGGGAGCGAGAGCCAGCAGGAGAGGGAGCATCGTCAGCAGCAGGAGATGAACATCTCCTTTGGGATGATGATGAACCATGGCCACCATCACTACGGACAGCATCAGCAGCAGCACCATCATCATCCGCCTCCGTCATCGTCTTCCTCTTCCTCCATGCATGCCGCTGCCGCAAGCTTCATGAGCAGCAAGGAGGCATCTGCAGGAGCTTATGATCATCTGGGGGAGCTGGACCAGGCCTTGTTCATGTACCTGGATCATGGCAGCCATGCGGCGTCGCACCAAGAACAAAGGCAGACCCTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCATCACCCAAGGGAGAGATTAGTTTAGTGCTGTCCCCAGCAGCTGTGGGAACCAAGATGGCGAGGTCACCTGATCATCACCACCACCATCAGCAGCAAGCAGCAGCAGCCATGGAGGAGTTGGCGACAGGGAGCAGGAGACAGGATCACCACCACCTGCAGCACCAACCTTTCGCTGCTGAGCCTGCAGGGATCAACAGGGATGTGAAGCCGGTGACAGCCAAGAAGGATCACAGGAGGGGTGTATCTACTGGTGAACGCGACCCAAAGACGCTGAGGAGGCTAGCCCAGAACAGGGAGGCAGCAAGGAAAAGCAGGCTAAGGAAGAAGGCTTACATCCAGCAGCTGGAGTCCAGCAGGATCAGGCTTGCTCAGCTCGAACAGGAACTGCACACCGCGAGAGCCCAGGGGGTGTTCTTCCCCGGCAGCGGCGGGCTGATCGGCGAGGGAGGCAGCGGGAAGGGGGTCCTGCTGGGCGGGATCGATGGCGTCGGCGGCGGCGGCGGCGGGGGGCTGAGCTCGGAGGCGGCGATGTTCGACGTGGAGTACGGGAGGTGGCAGGAGGAGCACCACCGGCTGATGTACGAGCTGCGGGCGGCGCTGCAGCAGCAGCTGCCGGAGGGGGAGCTGCAGGTGTACGTGGAGAGCTGCCTGGCGCACCACGACGAGGTCGCCGCCATCAAGGACGGCGCCATCAGGGGCGACGTCTTCCACCTCATCTCCGGCGTCTGGATGAGCCCAGCCGAGCGCTGCTTCCTCTGGCTCGGCGGCTTCCGCCCCTCCGAGGTCATCAAGATGCTGGTGGCGCACGTGGAGCCGCTGACGGAGCAGCAGATCGTGGGGGTGTACGGGCTGCAGCAGTCGGCGCTGGAGACGGAGGAGGCGCTGACGCAGGGCCTCGACGCGCTCTACCAGTCGCTCTCCGACACCGTCGTCTCCGACGCCCTCAGCTGCCCTTCCAACGTCGCCAACTACATGGGCCAGATGGCCGTCGCCATCAACAAGCTCTCCACCCTCGAGGGCTTCGTCCGCCAGGCTGAGAACCTGAGGCAGCAGACGCTGCACCGGCTGCAGCAGGTGCTGACGACGAGGCAGATGGCGCGGTCGCTGCTCGCCGTCTCCGACTACTTCCACCGCCTCCGCACCCTCAGCTCCCTCTGGGTCACCCGCCCCAGGCACCCGCCTCACGACCACCAGCCGCCGCCGCACTCCGCCGCCCCCCACACCTGAGATCACCGCCGCCGGCAACGCATGCAAACACCGTAGCTCTTAGCTAGCAGCTTAGAGATATCGAGAGATCAGAAATTAAGCGATCGATCGAGAGAGGACGACGACTGTGAAACCCCCCATGGAATGGATGGATGGATGGATGGATGAACCGATGTGTACTGTGTTTGGGCATTAACCCTTTGATGTAAACAAAGTAGGCGTGTTTGACTGCTTGGTCGATCGATCGAGATCTCTGTCGATAGGATCTTGAATTAGCGGATCTTACCTCAGCAGCTGGTTCATCAAGTGTTGATGCAGCTCAATCAAACTT] consensusID : consensus_8100#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1582 fasta sequence [TGGCATTTAGCATTAGTAGTAATAATAGCATAATAACAGCAGTATATATAGCTTAGGCACAGAAACAAATGTGCCAAGCATACACAGGGAGTAGCAGTAGGCTGTAGTATAGGAGGAGGAGGGATATATTCCTATGGTTGCAGAAAGTTGCATCCTTTTTCTGGGGTCATCAGAAACGATCATGGTATACGGCCGGCCGGCCTGCATGCAGCAGATTCTCAGGTACTCCATTTTGACCAGGATATCTGCTAGCTGCAACAAATCTCTGCAGTACTACTACTGCTACTACTACCACTGCACTCCTGTGGAGATCACACATCTCAGGACCAGGGAATCAGCAACCCAAAGTCCATGCATATGAAACCAACAATCTCTCTAGCTATACCTCTCTCTTCCCTCTCTCTCTCTCTCTCTATCTCTGACTGCTAAGATCTGGCCGGCTGGTTTGGACTGTGACATGTAACAAACTGCTCAATGATTTCGCCGAGATCGAGCTGCATCTGCATGTGGCCTGGTGCAGAGAAAGAGGGACGTACACACACGCCGAAGAGATGATCGATCAATCCCCATGCTACTGATCGTTCTTGTTGCTGCTACTAGCTAGGAGTAGTAGCAAGATGTGCACATTTGTTCGAGTTTGACCCGATCGATGCTATCCACTTCTGTTGTTTCCAGCTTCAGGTTACAGTGATCAGTGTTGCAGTGTAGCAGCAGCTAGCTGTGCAGCTGTGTGATATCTGTCCTTGGCTCCCGTATCTCTCGTAGCCCCCAGCTTTCTCGTGTTGCCTGTGTGCCTGCAGTACTGCAGCTATAGCTAGCTTTGGACGTACCTACATGCATATATAGTACACACTACTCTCTGCCATGCAAAGCATGATGAATTTGAGCAGCAGCAGCAGTAGCACAGTAGTGTCTTGTTCCAGCTGCATGCCTGCATATATACAGCCTAGCTCTCTTCTTCAGTAGAGTTTTCAGTAGCAATTCGATCAGTTTGTGAGTTGTGGTGTGTGAGTCTCCAGGGTTAGCTGGTCTTCTGCTTTTGCTCGATCGATCTCTTGATTTGTGTTGTGCTCATGGATGATGCAGAGACCCTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCATCACCCAAGGTATTTAATTAATTTTACTTACTTTCATCTGAATCTCACATTGGTTATGTCATTTGTCTTTTCAATGTAGCACTCGTGTGTAGTATATATGAAATCAAAGATTGGTTTAATGTTTGTGGATGTGATGATTGATTGATTGATTTGGCAGGGAGAGATTAGTTTAGTGCTGTCCCCAGCAGCTGTGGGAACCAAGATGGCGAGGTCACCTGATCATCACCACCACCATCAGCAGCAAGCAGCAGCAGCCATGGAGGAGTTGGCGACAGGGAGCAGGAGACAGGATCACCACCACCTGCAGCACCAACCTTTCGCTGCTGAGCCTGCAGGGATCAACAGGGATGTGAAGCCGGTGACAGCCAAGGTCAGCATCATCACTTAACCACTTAATTAACCAACTAATATCTAACCCTGCTAGCTAAAGAAAACACCCTGATTAATCTATT] [-] EMBL AK119382 [TGGCATTTAGCATTAGTAGTAATAATAGCATAATAACAGCAGTATATATAGCTTAGGCACAGAAACAAATGTGCCAAGCATACACAGGGAGTAGCAGTAGGCTGTAGTATAGGAGGAGGAGGGATATATTCCTATGGTTGCAGAAAGTTGCATCCTTTTTCTGGGGTCATCAGAAACGATCATGGTATACGGCCGGCCGGCCTGCATGCAGCAGATTCTCAGGTACTCCATTTTGACCAGGATATCTGCTAGCTGCAACAAATCTCTGCAGTACTACTACTGCTACTACTACCACTGCACTCCTGTGGAGATCACACATCTCAGGACCAGGGAATCAGCAACCCAAAGTCCATGCATATGAAACCAACAATCTCTCTAGCTATACCTCTCTCTTCCCTCTCTCTCTCTCTCTCTATCTCTGACTGCTAAGATCTGGCCGGCTGGTTTGGACTGTGACATGTAACAAACTGCTCAATGATTTCGCCGAGATCGAGCTGCATCTGCATGTGGCCTGGTGCAGAGAAAGAGGGACGTACACACACGCCGAAGAGATGATCGATCAATCCCCATGCTACTGATCGTTCTTGTTGCTGCTACTAGCTAGGAGTAGTAGCAAGATGTGCACATTTGTTCGAGTTTGACCCGATCGATGCTATCCACTTCTGTTGTTTCCAGCTTCAGGTTACAGTGATCAGTGTTGCAGTGTAGCAGCAGCTAGCTGTGCAGCTGTGTGATATCTGTCCTTGGCTCCCGTATCTCTCGTAGCCCCCAGCTTTCTCGTGTTGCCTGTGTGCCTGCAGTACTGCAGCTATAGCTAGCTTTGGACGTACCTACATGCATATATAGTACACACTACTCTCTGCCATGCAAAGCATGATGAATTTGAGCAGCAGCAGCAGTAGCACAGTAGTGTCTTGTTCCAGCTGCATGCCTGCATATATACAGCCTAGCTCTCTTCTTCAGTAGAGTTTTCAGTAGCAATTCGATCAGTTTGTGAGTTGTGGTGTGTGAGTCTCCAGGGTTAGCTGGTCTTCTGCTTTTGCTCGATCGATCTCTTGATTTGTGTTGTGCTCATGGATGATGCAGAGACCCTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCATCACCCAAGGTATTTAATTAATTTTACTTACTTTCATCTGAATCTCACATTGGTTATGTCATTTGTCTTTTCAATGTAGCACTCGTGTGTAGTATATATGAAATCAAAGATTGGTTTAATGTTTGTGGATGTGATGATTGATTGATTGATTTGGCAGGGAGAGATTAGTTTAGTGCTGTCCCCAGCAGCTGTGGGAACCAAGATGGCGAGGTCACCTGATCATCACCACCACCATCAGCAGCAAGCAGCAGCAGCCATGGAGGAGTTGGCGACAGGGAGCAGGAGACAGGATCACCACCACCTGCAGCACCAACCTTTCGCTGCTGAGCCTGCAGGGATCAACAGGGATGTGAAGCCGGTGACAGCCAAGGTCAGCATCATCACTTAACCACTTAATTAACCAACTAATATCTAACCCTGCTAGCTAAAGAAAACACCCTGATTAATCTATT] consensusID : consensus_8100#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1158 fasta sequence [TGGCCATGCTTATTTTCTGGGCTGTGCCAAAATAAATGCTACAAAGGTAGAGTAGATTCATATTATTCTTCTGCTCCTACTCTTGCAGTCTTGCAGAGGTTGGACCAGACAAATAATTAATATAGCATCATACATAATTGGCTTATAGAAGCATGATTTCATGATGATGTGTGATGCCTTCACTACTTCCTCAACCTTGTGCATGCATGCTACTATACTACCTGCATCTATCTCACACATACATATAGCTATACCTCATCACCAACAATTTTGCTTCTTGTGCTGCTCCTAATTTTGCTTCTTGTGTTGCACCACCAGGAGCAGCAAGGAGGCATCTGCAGGAGCTTATGATCATCTGGGGGAGCTGGACCAGGCCTTGTTCATGTACCTGATCATCACCACCACCATCAGCAGCAAGCAGCAGCAGCCATGGAGGAGTTGGCGACAGGGAGCAGGAGACAGGATCACCACCACCTGCAGCACCAACCTTTCGCTGCTGAGCATCCAGCAGCTGGAGTCCAGCAGGATCAGGCTTGCTCAGCTCGAACAGGAACTGCACACCGCGAGAGCCCAGGTAGGCGAATTTCATAATTTCAAATTCGAGCAAAATTCAAACTGCACCCAAATCAAATCAAACACAACCAATTCGGATTATGTATTATGGATGAAAATGTGTACGGATCTATACATGGTGCAGGGGGTGTTCTTCCCCGGCAGCGGCGGGCTGATCGGCGAGGGAGGCAGCGGGAAGGGGGTCCTGCTGGGCGGGATCGATGGCGTCGGCGGCGGCGGCGGCGGGGGGCTGAGCTCGGAGGCGGCGATGTTCGACGTGGAGTACGGGAGGTGGCAGGAGGAGCACCACCGGCTGATGTACGAGCTGCGGGCGGCGCTGCAGCAGCAGCTGCCGGAGGGGGAGCTGCAGGTGTACGTGGAGAGCTGCCTGGCGCACCACGACGAGGTCGCCGCCATCAAGGACGGCGCCATCAGGGGCGACGTCTTCCACCTCATCTCCGGCGTCTGGATGAGCCCAGCCGAGCGCTGCTTCCTCTGGCTCGGCGGCTTCCGCCCCTCCGAGGTCATCAAGGTACGCTACTATGCACTCCCCCCGCCATGGATTGGCTTGGATTGGATTAACCCTAACCCTAGATGCTCGTAGCG] [-] EMBL AK106880 [TGGCCATGCTTATTTTCTGGGCTGTGCCAAAATAAATGCTACAAAGGTAGAGTAGATTCATATTATTCTTCTGCTCCTACTCTTGCAGTCTTGCAGAGGTTGGACCAGACAAATAATTAATATAGCATCATACATAATTGGCTTATAGAAGCATGATTTCATGATGATGTGTGATGCCTTCACTACTTCCTCAACCTTGTGCATGCATGCTACTATACTACCTGCATCTATCTCACACATACATATAGCTATACCTCATCACCAACAATTTTGCTTCTTGTGCTGCTCCTAATTTTGCTTCTTGTGTTGCACCACCAGGAGCAGCAAGGAGGCATCTGCAGGAGCTTATGATCATCTGGGGGAGCTGGACCAGGCCTTGTTCATGTACCTGATCATCACCACCACCATCAGCAGCAAGCAGCAGCAGCCATGGAGGAGTTGGCGACAGGGAGCAGGAGACAGGATCACCACCACCTGCAGCACCAACCTTTCGCTGCTGAGCATCCAGCAGCTGGAGTCCAGCAGGATCAGGCTTGCTCAGCTCGAACAGGAACTGCACACCGCGAGAGCCCAGGTAGGCGAATTTCATAATTTCAAATTCGAGCAAAATTCAAACTGCACCCAAATCAAATCAAACACAACCAATTCGGATTATGTATTATGGATGAAAATGTGTACGGATCTATACATGGTGCAGGGGGTGTTCTTCCCCGGCAGCGGCGGGCTGATCGGCGAGGGAGGCAGCGGGAAGGGGGTCCTGCTGGGCGGGATCGATGGCGTCGGCGGCGGCGGCGGCGGGGGGCTGAGCTCGGAGGCGGCGATGTTCGACGTGGAGTACGGGAGGTGGCAGGAGGAGCACCACCGGCTGATGTACGAGCTGCGGGCGGCGCTGCAGCAGCAGCTGCCGGAGGGGGAGCTGCAGGTGTACGTGGAGAGCTGCCTGGCGCACCACGACGAGGTCGCCGCCATCAAGGACGGCGCCATCAGGGGCGACGTCTTCCACCTCATCTCCGGCGTCTGGATGAGCCCAGCCGAGCGCTGCTTCCTCTGGCTCGGCGGCTTCCGCCCCTCCGAGGTCATCAAGGTACGCTACTATGCACTCCCCCCGCCATGGATTGGCTTGGATTGGATTAACCCTAACCCTAGATGCTCGTAGCG] consensusID : consensus_8100#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [TTTTTTTTTATTTAATTAATTTTACTTACTTTCATCTGAATCTCACATGGTTATGTCATTGTCTTTTCAATGTAGCACTCGTGTGTAGTATATATGAAATCAAAGATGGTTTAAGTTGTGGATGTGATGATTGATTGATTGATTTTGGCAGGGAGAGATTAGTTTAGTGCTGTCCCCAGCAGCTGTGGGAACCAAGATGGCGAGGTCACCTGATCATCAACACCACCATCAGCAGCAAGCAGCAGCAGCCATGGAGGAGTTGGCGACAGGGAGCAGGAGACAGGATCACCACCACCTGCAGCACCAACCTTTCGCTGCTGAGCATCCAGCAGCTGGAGTCCAGCAGGATCAGGCTTGCTCAGCTCGAACAGGAACTGACACCGGAGAGCCCAGGTAGGCGAATTTCATAATTTCAAATTCGAGCAAAATTCAAACTGACCCAAATCAAATCAAACACAACAATTCGGATTATGTATTATGGATGAAAATGTGTACGGATCTATACATGGTGCAGGGGGTGTTCTTCCCCGGAGGGGGGGCTGATCGGGA] [-] EMBL BI802217 [TTTTTTTTTATTTAATTAATTTTACTTACTTTCATCTGAATCTCACATGGTTATGTCATTGTCTTTTCAATGTAGCACTCGTGTGTAGTATATATGAAATCAAAGATGGTTTAAGTTGTGGATGTGATGATTGATTGATTGATTTTGGCAGGGAGAGATTAGTTTAGTGCTGTCCCCAGCAGCTGTGGGAACCAAGATGGCGAGGTCACCTGATCATCAACACCACCATCAGCAGCAAGCAGCAGCAGCCATGGAGGAGTTGGCGACAGGGAGCAGGAGACAGGATCACCACCACCTGCAGCACCAACCTTTCGCTGCTGAGCATCCAGCAGCTGGAGTCCAGCAGGATCAGGCTTGCTCAGCTCGAACAGGAACTGACACCGGAGAGCCCAGGTAGGCGAATTTCATAATTTCAAATTCGAGCAAAATTCAAACTGACCCAAATCAAATCAAACACAACAATTCGGATTATGTATTATGGATGAAAATGTGTACGGATCTATACATGGTGCAGGGGGTGTTCTTCCCCGGAGGGGGGGCTGATCGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8100#1 -------------------------TGGCATTTAGCATTAGTAGTAATAATAGCATAATA 35 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 AGGGAGCATGGAGCCAAACAGAAAGTCTGTTTCGCCATTAATGGCTCTCCCA-CTCACCT 59 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 ACAGCAGTATATATAGCTTAGGCACAGAAACAAATGTGCCAAGCATACACAGGGAGTAGC 95 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 CTCTCTCTAGAAACACATAGCCAAGATCATCATCATCAGCAACCATATTAGTGAATTAAG 119 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 AGTAGGCTGTAGTATAGGAGGAGGAGGGATA-TATTCCTATGGTTGCAGAAAGTTGCATC 154 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 AGGAAATCAAAGCAGTAGCAGCCCAGGAACAGCATCATCAAAGCAGTAAGAGAGGGTAGT 179 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 CTTTTTCTGGGGTCATC-----AGAAACGATCATGGTATACGGCCGGCCGGCCTGCATGC 209 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 TTGCAAGTGGTGCTAGTGTCCAAGGCGCCATCACGAACTAGAGTCCTAGATAGAGCTAGA 239 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 AGCAGATTCTCAGGTACTCCATTTTGACCAGGATATCTGCTAGCTGCAACAAATCTCTGC 269 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 GGTCATGCATGGGGTAGTTGCTGGTGTGGAAGAGGAAGAGAGAAAGTGAGTGAGAGAGAG 299 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 AGTACTACTACTGCTACTACTACCACTGCACTCCTGTGGAGATCACACATCTCAGGACCA 329 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 AGAGGTGGCGCCTTGGCTGCTAGCCTCATAGAGTCAAAGAGTATTTAGGACCTTGCAGCT 359 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 GGGAATCAGCAACCCAAAGTCCATGCATATGAAACCAACAATCTCTCTAGCTATACCTCT 389 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 ATGGCTATAGATAGATAGAGGCACATACGCATACGTATATAGCTTGCTACCT-TGCCTTC 418 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 CTCTTCCCTCTCTCTCTCTCTCTCTATCTCTGACTGCTAAGATCTGGCCGGCTGGTTTGG 449 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 TCTGTGTATGTTTCGGCGTGTGTTCTTCTTCTTCTCTTCTTCCTCCTCTCGATTCTGAAG 478 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 ACTGTGACATGTAACAAACTGCTCAATGATTTCGCCGAGATCGAGCTGCATCTGCATGTG 509 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 AGGTTAGCTTTGATTTGATCGATCGATGATGAG--CGGGAGCGAGAGCCAGCAGGAGAGG 536 consensus_8100#2 ----TGGCCATGCTTATTT---TCTGGGCTGTG--CCAAAATAAATGCTACAAAGGTAGA 51 consensus_8100#1 GCCTGGTGCAGAGAAAGAGGGACGTACACACACGCCGAAGAGATGATCGATCA--ATCCC 567 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 GAGCATCGTCAGCAGCAGGAGATGAACATCTCCTTTGGGATGATGATGAACCATGGCCAC 596 consensus_8100#2 GTAGATTCATATTATT----CTTCTGCTCCTACTCTTGCAGTCTTGCAGAGGTTGG--AC 105 consensus_8100#1 CAT-GCTACTGATCGTTCTTGTTGCTGCTACTAGCTAGGAGTAGTAGCAAGATGTGCACA 626 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 CATCACTACGGACAGCATCAGCAGCAGC-ACCAT-CATCATCCGC--CTCCGTCATCGTC 652 consensus_8100#2 CAG----ACAAATA--ATTAATA-TAGC-ATCATACATAATTGGC--TTATAGAAGCATG 155 consensus_8100#1 TTTGTTCGAGTTTGACCCGATCGATGCTATCCACTTC-TGTTGTTTCCAGCTTCAGGTTA 685 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 TTCCTCTTCCTCCATGCATGCCGCTGCCGCAAGCTTCATCAAGGAGGCATCTGCAGGAGC 712 consensus_8100#2 AT--TTCATGATGATGTGTGATGCCTTCACTA-CTTCCTCAACCTTGTGCATGCATGCTA 212 consensus_8100#1 CAGTGATCAG-TGTTGCAG-TGTAGCAGCAGCTAGCTGTGCAGCTGTGTGATATCTGTCC 743 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 TTATGATCATCTGGGGGAGCTGGACCAGGCCTTGTTCATGTACCTGGATCATGGCAGCCA 772 consensus_8100#2 CTAT-ACTACCT---GCATCTATCTCACAC---ATACATATAGCTATACCTCATCACCAA 265 consensus_8100#1 TTGGCTCCCGTATCTCTC------GTAGCCCC----CAGCTTTCTCGTGTTGCCTGTGTG 793 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 TGCGGCGTCGCACCAAGAACAAAGGCAGACCCTCAACATCTTCCCTTCCCAGCCCATGCA 832 consensus_8100#2 --CAATTTTGCTTCTTGT------GCTGCTCCTAATTTTGCTTCTTGTGTTGCACCACCA 317 consensus_8100#1 CCTGCAGTACTGCAGCTATAGCTAGCT---TTGGACGTACCTACATGCATATAT---AGT 847 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 TGTGGAGCCATCACCCAAGGGAGAGATTAGTTTAGTGCTGTCCCCAGCAGCTGTGGGAAC 892 consensus_8100#2 GGAGCAGCAAGGAGGCATCTGCAGGA---GCTTATGATCATCTGGGGGAGCTG---GACC 371 consensus_8100#1 ACACACTACTCTCTGCCATGCAAAGCATGATGAATTTGAGCAGCA-GCAGCAGTAGCACA 906 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 CAAGATGGCGAGGTCACCTGATCATCACCACCACCATCAGCAGCAAGCAGCAGCAGCCAT 952 consensus_8100#2 AGGCCTTGTTCATGTACCTGATCATCACCACCACCATCAGCAGCAAGCAGCAGCAGCCAT 431 consensus_8100#1 GTAGTGTCTTGTTCCAGC---TGCATGCCTGCATATATACAGCCT--AGCTCT---CTTC 958 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 GGAGGAGTTGGCGACAGGGAGCAGGAGACAGGATCACCACCACCTGCAGCACCAACCTTT 1012 consensus_8100#2 GGAGGAGTTGGCGACAGGGAGCAGGAGACAGGATCACCACCACCTGCAGCACCAACCTTT 491 consensus_8100#1 TTCAGTAGAGTTTTCAGT-AGCAATTCGATCAGTTTGTGAGTTGTGGTGTGTGAGTCTCC 1017 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 CGCTGCTGAGCCTGCAGGGATCAACAGGGATGTGAAGCCGGTGACAGCCAAGAAGGATCA 1072 consensus_8100#2 CGCTGCTGAGCATCCAG----CAGCTGGA--GTCCAGCAGGATCAGGCTTGCTCAGCTCG 545 consensus_8100#1 AGGGTTAGCTGGTCTTCTGCTTTTGCTCGATC--GATCTCTTGATTTGTGTTGTGCTCAT 1075 consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 CAGGAGGGGTGTATCTACTGGTGAACGCGACCCAAAGACGCTGAGGAGGCTAGCCCAGAA 1132 consensus_8100#2 AACAGGAACTGCAC--ACCG-----CGAGAGCCCAGGTAGGCGAATTTCATAATTTCAAA 598 consensus_8100#1 GGATGATGCAGAGACCCTCAACATCTTCCCTTCCCAGCCCATGCATGTGGAGCCATCACC 1135 consensus_8100#3 ---------------------------------------------------------TTT 3 consensus_8100#0 CAGGGAGGCAGCAAGGAAAAGCAGGCTAAGGAAGAAGGCTTACATCCAGCAGCTGGAGTC 1192 consensus_8100#2 TTCG-----AGCAA---AATTCAAACTGCACCCAAA---TCAAATCAAACAC----AACC 643 consensus_8100#1 CAAGGTATTTAATTAATTTTACTT--ACTTTCATCTGAATCTCACATTGGTTATGTCATT 1193 consensus_8100#3 TTTTTTATTTAATTAATTTTACTT--ACTTTCATCTGAATCTCACAT-GGTTATGTCATT 60 consensus_8100#0 CAGCAGGATCAGGCTTGCTCAGCTCGAACAGGAACTGCACACCGCGAGAGCCCAGGGGGT 1252 consensus_8100#2 AATTCGGATTATGTATTATGGATGAAAATGTGTACGGATCTATAC-ATGGTGCAGGGGGT 702 * * * * * * * * * * consensus_8100#1 TGTCTTTTCAATGTAGCACTCGTGTGTAGTATATATGAAATCAAAGATTGGTTTAATGTT 1253 consensus_8100#3 -GTCTTTTCAATGTAGCACTCGTGTGTAGTATATATGAAATCAAAGAT-GGTTTAAG--T 116 consensus_8100#0 -GTTCTTCCCCGGCAGCGGCGGGCTGATCGGCGAGGGAGGCAGCGGGAAGGG--GGTCCT 1309 consensus_8100#2 -GTTCTTCCCCGGCAGCGGCGGGCTGATCGGCGAGGGAGGCAGCGGGAAGGG--GGTCCT 759 ** ** * * *** * ** ** * ** * consensus_8100#1 TGTGGATGTGAT-GATTGATTGATTGATTT-GGCAGGGAGAGATT-AGTTTAGTGCTGTC 1310 consensus_8100#3 TGTGGATGTGAT-GATTGATTGATTGATTTTGGCAGGGAGAGATT-AGTTTAGTGCTGTC 174 consensus_8100#0 GCTGGGCGGGATCGATGGCGTCGGCGGCGGCGGCGGCGGGGGGCTGAGCTCGGAGGCGGC 1369 consensus_8100#2 GCTGGGCGGGATCGATGGCGTCGGCGGCGGCGGCGGCGGGGGGCTGAGCTCGGAGGCGGC 819 *** * *** *** * * * *** * * * * * ** * * * * * consensus_8100#1 CCCAGCAGCTGTGGGAACCAAGA--TGGCGAGG------TCACCTGATCATCACCACCAC 1362 consensus_8100#3 CCCAGCAGCTGTGGGAACCAAGA--TGGCGAGG------TCACCTGATCATCAACACCAC 226 consensus_8100#0 GATGTTCGACGTGGAGTACGGGAGGTGGCAGGAGGAGCACCACCGGCTGATGTACGA-GC 1428 consensus_8100#2 GATGTTCGACGTGGAGTACGGGAGGTGGCAGGAGGAGCACCACCGGCTGATGTACGA-GC 878 * **** * ** **** * **** * * ** * * consensus_8100#1 CATCAGCAGCAA-GCAGCAGCAGCCATGGAGGAGTTGGCGACAGGGAGCAGGAGACAGGA 1421 consensus_8100#3 CATCAGCAGCAA-GCAGCAGCAGCCATGGAGGAGTTGGCGACAGGGAGCAGGAGACAGGA 285 consensus_8100#0 TGCGGGCGGCGCTGCAGCAGCAGCTGCCGGAGGGGGAGCTGCAGGT-GTACGTGGAGAGC 1487 consensus_8100#2 TGCGGGCGGCGCTGCAGCAGCAGCTGCCGGAGGGGGAGCTGCAGGT-GTACGTGGAGAGC 937 ** ** *********** * * * ** **** * * * * * consensus_8100#1 TCACCACCACCTGCAGCACCAACCTTTCGCTGCTGAGCCTGCAGGGATCAA----CAGGG 1477 consensus_8100#3 TCACCACCACCTGCAGCACCAACCTTTCGCTGCTGAGCATCCAGCAGCTGGAGTCCAGCA 345 consensus_8100#0 TGCCTGGCGCAC-CACGACGAGGTCGCCGCCATCAAGGACGGCGCCATCAG----GGGCG 1542 consensus_8100#2 TGCCTGGCGCAC-CACGACGAGGTCGCCGCCATCAAGGACGGCGCCATCAG----GGGCG 992 * * * * ** ** * *** ** * * consensus_8100#1 ATGTGAAGCCGGTGACAGCCAAGGTCAGCATCA--TCACTTAACCACTTAATTAACCAAC 1535 consensus_8100#3 GGATCAGGCTTGCT-CAGCTCGAACAGGAACTG--ACACCGGAGAGCCCAGGTAGGCGAA 402 consensus_8100#0 ACGTCTTCCACCTCATCTCCGGCGTCTGGATGAGCCCAGCCGAGCGCTGCTTCCTCTGGC 1602 consensus_8100#2 ACGTCTTCCACCTCATCTCCGGCGTCTGGATGAGCCCAGCCGAGCGCTGCTTCCTCTGGC 1052 * * * * * ** * * consensus_8100#1 T-----AATATCTAACCCTGCTAGCTAAAGAAAACACCCTGATTAATCTATT-------- 1582 consensus_8100#3 TTTCATAATTTCAAATTCGAGCAAAATTCAAACTGACCCAAATCAAATCAAACACAACAA 462 consensus_8100#0 TCG-GCGGCTTCCGCCCCTCCGAGGTCATCAAGATGCTGGTGGCGCACGTGGAGCCGCTG 1661 consensus_8100#2 TCG-GCGGCTTCCGCCCCTCCGAGGTCATCAAGGTAC-GCTACTATGCACTCCCCCCGCC 1110 * ** * * ** * consensus_8100#1 ------------------------------------------------------------ consensus_8100#3 TTCGGATTATGTATTATGGATGAAAATGTGTACGGATCTATACATGGTGCAGGGGGTGTT 522 consensus_8100#0 ACGGAGCAGCAGATCGTGGGGGTGTACGGGCTGCAGCAGTCGGCGCTGGAGACGGAGGAG 1721 consensus_8100#2 ATGGATTGGC------TTGGATTGGATTAACCCTAACCCTAGATGCTCGTAGCG------ 1158 consensus_8100#1 ------------------------------------------------------------ consensus_8100#3 CTTCCCCGGAGGGGGGGCTGATCGGGA--------------------------------- 549 consensus_8100#0 GCGCTGACGCAGGGCCTCGACGCGCTCTACCAGTCGCTCTCCGACACCGTCGTCTCCGAC 1781 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 ------------------------------------------------------------ consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 GCCCTCAGCTGCCCTTCCAACGTCGCCAACTACGGGCCAGATGGCCGTCGCCATCAACAA 1841 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 ------------------------------------------------------------ consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 GCTCTCCACCCTCGAGGGCTTCGTCCGCCAGGCTGAGAACCTGAGGCAGCAGACGCTGCA 1901 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 ------------------------------------------------------------ consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 CCGGCTGCAGCAGGTGCTGACGACGAGGCAGATGGCGCGGTCGCTGCTCGCCGTCTCCGA 1961 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 ------------------------------------------------------------ consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 CTACTTCCACCGCCTCCGCACCCTCAGCTCCCTCTGGGTCACCCGCCCCAGGCACCCGCC 2021 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 ------------------------------------------------------------ consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 TCACGACCACCAGCCGCCGCCGCACTCCGCCGCCCCCCACACCTGAGATCACCGCCGCCG 2081 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 ------------------------------------------------------------ consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 GCAACGCATGCAAACACCGTAGCTCTTAGCTAGCAGCTTAGAGATATCGAGAGATCAGAA 2141 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 ------------------------------------------------------------ consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 ATTAAGCGATCGATCGAGAGAGGACGACGACTGTGAAACCCCCCATGGAATGGATGGATG 2201 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 ------------------------------------------------------------ consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 GATGGATGGATGAACCGATGTGTACTGTGTTTGGGCATTAACCCTTTGATGTAAACAAAG 2261 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 ------------------------------------------------------------ consensus_8100#3 ------------------------------------------------------------ consensus_8100#0 TAGGCGTGTTTGACTGCTTGGTCGATCGATCGAGATCTCTGTCGATAGGATCTTGAATTA 2321 consensus_8100#2 ------------------------------------------------------------ consensus_8100#1 -------------------------------------------------------- consensus_8100#3 -------------------------------------------------------- consensus_8100#0 GCGGATCTTACCTCAGCAACTGGTTCATCAAGTGTTGATGCAGCTCAATCAAACTT 2377 consensus_8100#2 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||