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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8101#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1180 fasta sequence
[GAAAAGGCGGCCTCTGTACACCCACACTCCGCTCCCCTCCTGCTGCTACTCCAGTCCAGTCCAGTCCAGCGCACTCCTCACTCAACAACTCTCCCTCGATACTCTCCCCCCGCACCAAGAAACCACGGAATCCTCCTCCTCGATCCCTCCCAATCCCCAATCCCAGCATCCCCGAGATCCGCCTCCCAGCGCGATCCCAACCTCATGGCGTCGCCGCCGGGGAAGAAGGGGGAAGGCGGCGGCGATGGCGGCGGCGGGAAGGCGGAGTGGCTGATC-TACGCGTTCGT-GGCGCGCGGCACGGCGGTGC-TGGCGGAG-TACACCGAGTT-CACCGGCAACTTCCCGGCGCTCGCGGCGCAGTGCCTGCAGCGGCTCCCCGCCTCGGGCGGCGGCGGCTCCGGCGGTGGCGCGCCGGCGCGGTTCAGCTACGCGTGCGACGGGCACACCTTCAACTTCCTCCTCCACCGCGGCTACGCCTATTGTGTAGTTGCAAAGGAATCTGTCCCAAAGAATGTCTCGGTGGCTTTTCTAGAAAGGTTGAAAGATGACTTCATGAAGAGATATGGAGGTGGT-AAAGCTGATACAGCTCTTGCAAAAAGTCTGAATAAAGAATACGGACCAGTTATAAAGCAGCACATGCAGTATGTTCTTGATCATTCAGAAGAAATAGAGAAGACATTGAAAGTGCAAGCCCAAGTTTCTGAAGTTAAAAATATCATGTTAGAAAACATAGAGAAGACTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGACTTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAAGACATGGTTGCAGAACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGTAATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACTACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCGGTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATACAAATGTAAAGTTGAGTTGGTGTCAAGTGTTATTCAAACCGTGTGACCAACATTACATAAAGTAGTAATAGTACGGTTGCTTGTCGATTGATCCTAAAAAA]
[+] EMBL C26012 [GAAAAGGCGGCCTCTGTACACCCACACTCCGCTCCCCTCCTGCTGCTACTCCAGTCCAGTCCAGTCCAGCGCACTCCTCACTCAACAACTCTCCCTCGATACTCTCCCCCCGCACCAAGAAACCACGGAATCCTCCTCCTCGATCCCTCCCAATCCCCAATCCCAGCATCCCCGAGATCCGCCTCCCAGCGCGATCCCAACCTCATGGCGTNGCCGCCGGGGAAGAAGGGGGAAGGCGGCGGCGATGGCGGCGGCGGGAAGGCGGAGTGGCTGATCTTACGCGTTCGTGGGCGCGCGGGACGGCGGTTCTTGGCGGAGTTAAACCGAGTTNAACCG ]
[+] EMBL AK059902 [ CCAGTCCAGCGCACTCCTCACTCAACAACTCTCCCTCGATACTCTCCCCCCGCACCAAGAAACCACGGAATCCTCCTCCTCGATCCCTCCCAATCCCCAATCCCAGCATCCCCGAGATCCGCCTCCCAGCGCGATCCCAACCTCATGGCGTCGCCGCCGGGGAAGAAGGGGGAAGGCGGCGGCGATGGCGGCGGCGGGAAGGCGGAGTGGCTGATC TACGCGTTCGT GGCGCGCGGCACGGCGGTGC TGGCGGAG TACACCGAGTT CACCGGCAACTTCCCGGCGCTCGCGGCGCAGTGCCTGCAGCGGCTCCCCGCCTCGGGCGGCGGCGGCTCCGGCGGTGGCGCGCCGGCGCGGTTCAGCTACGCGTGCGACGGGCACACCTTCAACTTCCTCCTCCACCGCGGCTACGCCTATTGTGTAGTTGCAAAGGAATCTGTCCCAAAGAATGTCTCGGTGGCTTTTCTAGAAAGGTTGAAAGATGACTTCATGAAGAGATATGGAGGTGGT AAAGCTGATACAGCTCTTGCAAAAAGTCTGAATAAAGAATACGGACCAGTTATAAAGCAGCACATGCAGTATGTTCTTGATCATTCAGAAGAAATAGAGAAGACATTGAAAGTGCAAGCCCAAGTTTCTGAAGTTAAAAATATCATGTTAGAAAACATAGAGAAGACTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGACTTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAAGACATGGTTGCAGAACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGTAATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACTACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCGGTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATACAAATGTAAAGTTGAGTTGGTGTCAAGTGTTATTCAAACCGTGTGACCAACATTACATAAAGTAGTAATAGTACGGTTGCTTGTC ]
[+] EMBL AK102619 [ CCTCCTCGATCCCTCCCAATCCCCAATCCCAGCATCCCCGAGATCCGCCTCCCAGCGCGATCCCAACCTCATGGCGTCGCCGCCGGGGAAGAAGGGGGAAGGCGGCGGCGATGGCGGCGGCGGGAAGGCGGAGTGGCTGATC TACGCGTTCGT GGCGCGCGGCACGGCGGTGC TGGCGGAG TACACCGAGTT CACCGGCAACTTCCCGGCGCTCGCGGCGCAGTGCCTGCAGCGGCTCCCCGCCTCGGGCGGCGGCGGCTCCGGCGGTGGCGCGCCGGCGCGGTTCAGCTACGCGTGCGACGGGCACACCTTCAACTTCCTCCTCCACCGCGGCTACGCCTATTGTGTAGTTGCAAAGGAATCTGTCCCAAAGAATGTCTCGGTGGCTTTTCTAGAAAGGTTGAAAGATGACTTCATGAAGAGATATGGAGGTGGT AAAGCTGATACAGCTCTTGCAAAAAGTCTGAATAAAGAATACGGACCAGTTATAAAGCAGCACATGCAGTATGTTCTTGATCATTCAGAAGAAATAGAGAAGACATTGAAAGTGCAAGCCCAAGTTTCTGAAGTTAAAAATATCATGTTAGAAAACATAGAGAAGACTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGACTTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAAGACATGGTTGCAGAACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGTAATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACTACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCGGTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATACAAATGTAAAGTTGAGTTGGTGTCAAGTGTTATTCAAACCGTGTGACCAACATTACATAAAGTAGTAATAGTACGGTTGCTTGT ]
[+] EMBL AU092232 [ TAGAAAGGTTGAAAGATGCCTTCATGANGAGATATGGAGGTGGTAAAAGCTGATACAGCTCTTGCAAAAAGTCTGAATAAAGNATCCGGACCAGTTATAAAGCAGCACATGCAGTATGTTCTTGATCATTCAGAAGAAATAGAGAAGACATTGAAAGTGCAAGCCCAAGTTTCTGAAGTTAAAAATATCATGTTAGAAAACATAGAGAAGACTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGACTTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAAGACATGGTTGCAGAACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGTAATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACTACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCGGTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATACAAATGTAAAGTTGAGTTGGTGTCAAGTGTTATTCAAACCGTGTGACCAACATTACATAAAGTAGTAATAGTACGGTTGCTTGTCGATTGATCCTAAAAAA]
consensusID : consensus_8101#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 804 fasta sequence
[TTATGATAGCTATTACACTTGCTTTAGTTTCAAGTGTTGGAGATCTGGACATCAGGATAGCAAGGTGCCATCTGCCAAAGCTGATATTTACCCTTTTATAATCTTATATTAATTGCTCAAGCTGTGTGCTTTACATATTAAGAATTTTGTTTTGCTTGGTTCTATCTGAACGCAAGACCTGGAATGTAACAAATAGAAATGTCGCGTTCTTTTTTTTTTAATTTAAGAAAAGGGAACATTGTGGAATCGTCAACGGTTTAGCAGTTTTGGTGATGCCTTGAATTAAGCTATCTTCATCCATTATTACAGTCTGTTCATTTATGCTTCTTTGTGGTATTTTCAGACTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGACTTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAAGACATGGTTGCAGGACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGTAATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACTACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCGGTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATACAAATGTAAAGGTAAGNTGGTGTCAAGNGNTATTCAAACCGNGTGACCAACATTACATAAAGTAGTAATAGTACCGGTTGCTTGGCGATTGATCCTAATCATACCTACNTTTTTTTG]
[+] EMBL CB096234 [TTATGATAGCTATTACACTTGCTTTAGTTTCAAGTGTTGGAGATCTGGACATCAGGATAGCAAGGTGCCATCTGCCAAAGCTGATATTTACCCTTTTATAATCTTATATTAATTGCTCAAGCTGTGTGCTTTACATATTAAGAATTTTGTTTTGCTTGGTTCTATCTGAACGCAAGACCTGGAATGTAACAAATAGAAATGTCGCGTTCTTTTTTTTTTAATTTAAGAAAAGGGAACATTGTGGAATCGTCAACGGTTTAGCAGTTTTGGTGATGCCTTGAATTAAGCTATCTTCATCCATTATTACAGTCTGTTCATTTATGCTTCTTTGTGGTATTTTCAGACTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGACTTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAAGACATGGTTGCAGGACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGTAATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACTACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCGGTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATACAAATGTAAAGGTAAGNTGGTGTCAAGNGNTATTCAAACCGNGTGACCAACATTACATAAAGTAGTAATAGTACCGGTTGCTTGGCGATTGATCCTAATCATACCTACNTTTTTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8101#0 GAAAAGGCGGCCTCTGTACACCCACACTCCGCTCCCCTCCTGCTGCTACTCCAGTCCAGT 60
consensus_8101#1 ------------------------------------------------------------
consensus_8101#0 CCAGTCCAGCGCACTCCTCACTCAACAACTCTCCCTCGATACTCTCCCCCCGCACCAAGA 120
consensus_8101#1 ------------------------------------------------------------
consensus_8101#0 AACCACGGAATCCTCCTCCTCGATCCCTCCCAATCCCCAATCCCAGCATCCCCGAGATCC 180
consensus_8101#1 ------------------------------------------------------------
consensus_8101#0 GCCTCCCAGCGCGATCCCAACCTCATGGCGTCGCCGCCGGGGAAGAAGGGGGAAGGCGGC 240
consensus_8101#1 ------------------------------------------------------------
consensus_8101#0 GGCGATGGCGGCGGCGGGAAGGCGGAGTGGCTGATCTACGCGTTCGTGGCGCGCGGCACG 300
consensus_8101#1 ------------------------------------------------------------
consensus_8101#0 GCGGTGCTGGCGGAGTACACCGAGTTCACCGGCAACTTCCCGGCGCTCGCGGCGCAGTGC 360
consensus_8101#1 ----------------------------------------------TTATGAT--AGCTA 12
* * **
consensus_8101#0 CTGCAGCGGCTCCCCGCCTCGGGCGGCGGCGGCTCCGGCGGTGGCGCGCCGGCGCGGTTC 420
consensus_8101#1 TTACACTTGCTTTA-GTTTCAAGTGTTGGAGATCTGGACATCAGGATAGCAAGGTG--CC 69
* ** *** * ** * * ** * * * * * * * *
consensus_8101#0 AGCTACGCGTGC-GACGGGCACACCTTCAACTTCCTCCTCCACCGCGGCTACGCCTATTG 479
consensus_8101#1 ATCTGCCAAAGCTGATATTTACCCTTTTATAATCTT-----ATATTAATTGCTCAAGCTG 124
* ** * ** ** ** * ** * ** * * * * * **
consensus_8101#0 TGTAGTTGCAAAGGAATCTGTCCCAAAGAATGTCTCGGTGGCTTTTCTAGAAAGGTTGAA 539
consensus_8101#1 TGTGCTTT-------ACATATTAAGAATTTTGTTTTGCTTGGTTCTAT-------CTGAA 170
*** ** * * * ** *** * * * * ** * * ****
consensus_8101#0 AGATGACTTCATGAAGAGATATGGAGGTGGTAAAGCTGATACAGCTCTTGCAAAAAGTCT 599
consensus_8101#1 CG-------CAAGACCTGGAATGTAACAAATAGAAATGTCGCGTTCTTTTT----TTTTT 219
* ** ** * *** * ** * ** * ** * *
consensus_8101#0 GAATAAAGAATACGGACCAGTTATAAAGCAGCACATGCAGTATGTTCTTGATCATTCAGA 659
consensus_8101#1 AATTTAAGAAAAGGGAACATTGTGGAATCGTCAACGGTTTAGCAGTTTTGGTGATGCCTT 279
* * ***** * *** ** * ** * ** * * *** * ** *
consensus_8101#0 AGAAATAGAGAAGACATTGAAAGTGCAAGCCCAAGTTTCTGAAGTTAAAAATATCATGTT 719
consensus_8101#1 -GAATTA----AGCTATCTTCATCCATTATTACAGTCTGTTCATTT----ATGCTTCTTT 330
*** ** ** ** * *** * * * ** ** **
consensus_8101#0 AGAAAACATAGAGAAGACTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGAC 779
consensus_8101#1 GTGGTATTTTCAGA---CTTTGGGTCGTGGAGAAAAACTGAGTGAACTTCAAGATAAGAC 387
* * *** *******************************************
consensus_8101#0 TTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAA 839
consensus_8101#1 TTCCGATCTACAAAGTCAGGCCCAGGAATTCAAAAAGAAGGGAGTGAAAATTCGTAGGAA 447
************************************************************
consensus_8101#0 GACATGGTTGCAGAACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGT 899
consensus_8101#1 GACATGGTTGCAGGACATGAAAATCAAATTGGTGGTTCTTGGAATTCTTTTGCTTCTTGT 507
************* **********************************************
consensus_8101#0 AATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACT 959
consensus_8101#1 AATAATCGTATGGGTGTCTGTTTGTCAAGGGTTTGACTGCACCAAGCACTGAAAGTAACT 567
************************************************************
consensus_8101#0 ACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCG 1019
consensus_8101#1 ACTATCCTACTGTCGGTATAGCTCTGCTATATAATAGTTTGGAGACGTGAGATTGTGTCG 627
************************************************************
consensus_8101#0 GTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATA 1079
consensus_8101#1 GTGAAATCAAGTGCATTATTGACTCTTTGGCTTGATTTCTGCTGCACATTTATCGCGATA 687
************************************************************
consensus_8101#0 CAAATGTAAAGTTGAGTTGGTGTCAAGTGTTATTCAAACCGTGTGACCAACATTACATAA 1139
consensus_8101#1 CAAATGTAAAGGTAAGNTGGTGTCAAGNGNTATTCAAACCGNGTGACCAACATTACATAA 747
*********** * ** ********** * *********** ******************
consensus_8101#0 AGTAGTAATAGTAC-GGTTGCTTGTCGATTGATCCTAAAAAA--------------- 1180
consensus_8101#1 AGTAGTAATAGTACCGGTTGCTTGGCGATTGATCCTAATCATACCTACNTTTTTTTG 804
************** ********* ************* *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||