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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8108#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1677 fasta sequence
[CGTCGCTGCTCTCCCCGACTCCCCGTCCTCCTTCCCTGCGACGACGGCGGCGGCGGCGGCGGTGGCGTGGCGGCTCTTTGTCAAGGTAATTTATCCTATTCGCAAAACTGGTACATCAGGAGAAATAACCAAGTGAACGTGATAGTAGTATACCACTGGTAGTGCACCACGGCAAAGCGAGGTGTCCTGATTCCTGAACAGCAGGATGCGGTTTGCGGTGACAAAAGTATGTGGTGGTGGGGCAAAGGCACGGGCAGGCATGCTCCAGATTGCTGGCAGTAACATTGAAACACCAGCGCTACTTCTGTCCACACGCAAGGGGCTTCCAGCATTTGTGTCCCGTGATCTCCTTGCATCCCTCTCTCTCCCTGACTCTCTCCTTCTCCATGTGTGCCCTACCCATTTTATGGAAGGCCCTCCATCAAAAACAATATCAAATATTAGTGGTTTGCATCATATGTTGGGTCTTCCTGATCATATCCTCATAGCCGCAGCTGGTGATTCTATTGAGAGTTTACCAACAAGTGAAGCAAGCAATAAATTTGGTGCTTCCTTTGAGACACCAGCTGGCCGAAGACTGGTTAAACCATCAGATTATATGGAATTGATTTCCTGCATGAAGCCTAATTTGTGGGCAAGTTTGGCAGATGAGGTTCCAGCTTGGGTTACTGAGAAACGAAATAAAGTCTCTGTTGAGCGCACATTACGCTGGCTTGATGCATGTATTGCTTTGGATGAGGATTCTGGTGCAAATACTTTAGGTGTAGTTGTGGGTGGATCTAGTATAGAACTACGGAAGCTATGTGCCACTGAAGTGTCAAAGAGGAATGTGTCAGGTTTTTGGATAGGAGGGTTGGGCTTTGGAGACAGTCCTGAAGAACGTTGCAGTATACTCGATGCTGCAGTGGGTTGCTTGCCTCCGGAGAAACCTCGAGTTGTCTCTAGGCTTGGTCTTCCAGAGGAGGTTTTGGAGGGTGTAGCTGCTGGTATCGACCTCTTTGACTCTACGTACATTTACCAGCTTACTATGGGTGGTTTCGCACTGATCTTCCCCATTGACATGGTTGGAGAAAAGATGCAGAATGGTTCACTCAACAGTAGTGAT-GGAGATTTTACAAAGATTAATCTGCGTGCAACGACATATCGGAAAGACACGTCAAGGATAGTTGATAGCTGTAGCTGTTTCACATGCCAGAACCACACTCGTGCTTACCTTAATCATTTGCTCAATGTCCATGAGATGCTGGCTCAGATTCTACTGGAGATACACAATACACATCATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTAGACCTCTTGAGGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAAAGGAACAAATAGATAGTGCTAGATGGCTGAATTATTAACTTGCCTTTGGATGAATTTTCAGAAATTTTCGGGTTCATTAGTCAGTTTGTGTGCTAACTGTTCATGTTATTATAGCTG]
[+] EMBL AK106467 [CGTCGCTGCTCTCCCCGACTCCCCGTCCTCCTTCCCTGCGACGACGGCGGCGGCGGCGGCGGTGGCGTGGCGGCTCTTTGTCAAGGTAATTTATCCTATTCGCAAAACTGGTACATCAGGAGAAATAACCAAGTGAACGTGATAGTAGTATACCACTGGTAGTGCACCACGGCAAAGCGAGGTGTCCTGATTCCTGAACAGCAGGATGCGGTTTGCGGTGACAAAAGTATGTGGTGGTGGGGCAAAGGCACGGGCAGGCATGCTCCAGATTGCTGGCAGTAACATTGAAACACCAGCGCTACTTCTGTCCACACGCAAGGGGCTTCCAGCATTTGTGTCCCGTGATCTCCTTGCATCCCTCTCTCTCCCTGACTCTCTCCTTCTCCATGTGTGCCCTACCCATTTTATGGAAGGCCCTCCATCAAAAACAATATCAAATATTAGTGGTTTGCATCATATGTTGGGTCTTCCTGATCATATCCTCATAGCCGCAGCTGGTGATTCTATTGAGAGTTTACCAACAAGTGAAGCAAGCAATAAATTTGGTGCTTCCTTTGAGACACCAGCTGGCCGAAGACTGGTTAAACCATCAGATTATATGGAATTGATTTCCTGCATGAAGCCTAATTTGTGGGCAAGTTTGGCAGATGAGGTTCCAGCTTGGGTTACTGAGAAACGAAATAAAGTCTCTGTTGAGCGCACATTACGCTGGCTTGATGCATGTATTGCTTTGGATGAGGATTCTGGTGCAAATACTTTAGGTGTAGTTGTGGGTGGATCTAGTATAGAACTACGGAAGCTATGTGCCACTGAAGTGTCAAAGAGGAATGTGTCAGGTTTTTGGATAGGAGGGTTGGGCTTTGGAGACAGTCCTGAAGAACGTTGCAGTATACTCGATGCTGCAGTGGGTTGCTTGCCTCCGGAGAAACCTCGAGTTGTCTCTAGGCTTGGTCTTCCAGAGGAGGTTTTGGAGGGTGTAGCTGCTGGTATCGACCTCTTTGACTCTACGTACATTTACCAGCTTACTATGGGTGGTTTCGCACTGATCTTCCCCATTGACATGGTTGGAGAAAAGATGCAGAATGGTTCACTCAACAGTAGTGAT GGAGATTTTACAAAGATTAATCTGCGTGCAACGACATATCGGAAAGACACGTCAAGGATAGTTGATAGCTGTAGCTGTTTCACATGCCAGAACCACACTCGTGCTTACCTTAATCATTTGCTCAATGTCCATGAGATGCTGGCTCAGATTCTACTGGAGATACACAATACACATCATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTAGACCTCTTGAGGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAAAGGAACAAATAGATAGTGCTAGATGGCTGAATTATTAACTTGCCTTTGGATGAATTTTCAGAAATTTTCGGGTTCATTAGTCAGTTTGTGTGCTAACTGTTCATGTTATTATAGCTG]
[+] EMBL CB096620 [ CTAGTATAGAACTACGGAAGCTATGTGCCACTGAAGTGTCAAAGAGGAATGTGTCAGGTTTTTGGATAGGAGGGTTGGGCTTTGGAGACAGTCCTGAAGAACGTTGCAGTATACTCGATGCTGCAGTGGGTTGCTTGCCTCCGGAGAAACCTCGAGTTGTCTCTAGGCTTGGTCTTCCAGAGGAGGTTTTGGAGGGTGTAGCTGCTGGTATCGACCTCTTTGACTCTACGTACATTTACCAGCTTACTATGGGTGGTTTCGCACTGATCTTCCCCATTGACATGGTTGGAGAAAAGATGCAGAATGGTTCACTCGACAGTAGTGATGGGAGATTTTACAAAGATTAATCTGCGTGCAACGACATATCGGAAAGACACGTCAAGGATAGTTGATAGCTGTAGCTGTTTCACATGCCAGAACCACACTCGTGCTTACCTTAATCATTTGCTCAATGTCCATGAGATGCTGGCTCAGATTCTACTGGAGATACACAATACACATCATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGNTAGACCTCTTGAGGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGG AAGGAAGAAGAAtgacca ]
[-] EMBL CF309209 [ ATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTAGACCTCTTGAGGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAAAGGAACAAAaa ]
consensusID : consensus_8108#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 699 fasta sequence
[AGGACGAGACAAGGGGGGTCTTCCAGAGGAGGTTTTGGAGGGTGTAGCTGCTGGTATCGACCTCTTTGACTCTACGTACATTTACCAGCTTACTATGGGTGGTTTCGCACTGATCTTCCCCATTGACATGGTTGGAGAAAAGATGCAGAATGGTTCACTCAACAGTAGTGATGGAGATTTTACAAAGATTAATCTGCGTGCAACGACATATCGGAAAGACACGTCAAGGATAGTTGATAGCTGTAGCTGTTTCACATGCCAGAACCACACTCGTGCTTACCTTAATCATTTGCTCAATGTCCATGAGATGCTGGCTCAGATTCTACTGGAGATACACAATACACATCATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTAGATCTCTTGAGGCTTTCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAAATGAACAAATAGATAGTGCTAGATGGCTGAATTATTAACTTGCCTTTGGGATGAATTTTCAGAAATTTTTCG]
[+] EMBL CA765294 [AGGACGAGACAAGGGGGGTCTTCCAGAGGAGGTTTTGGAGGGTGTAGCTGCTGGTATCGACCTCTTTGACTCTACGTACATTTACCAGCTTACTATGGGTGGTTTCGCACTGATCTTCCCCATTGACATGGTTGGAGAAAAGATGCAGAATGGTTCACTCAACAGTAGTGATGGAGATTTTACAAAGATTAATCTGCGTGCAACGACATATCGGAAAGACACGTCAAGGATAGTTGATAGCTGTAGCTGTTTCACATGCCAGAACCACACTCGTGCTTACCTTAATCATTTGCTCAATGTCCATGAGATGCTGGCTCAGATTCTACTGGAGATACACAATACACATCATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTAGATCTCTTGAGGCTTTCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAAATGAACAAATAGATAGTGCTAGATGGCTGAATTATTAACTTGCCTTTGGGATGAATTTTCAGAAATTTTTCG]
consensusID : consensus_8108#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 322 fasta sequence
[TGCCATGGACTGAAGGAGTAGAAAATTTCATCATTACCTTTGCTTTTTCCGGCTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTATACCTCTTGAGGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAAAGGAACAAAA]
[+] EMBL CF309210 [TGCCATGGACTGAAGGAGTAGAAAATTTCATCATTACCTTTGCTTTTTCCGGCTGATACGAGACACGATCAAAACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGCAGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTATACCTCTTGAGGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCCTCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAAAGGAACAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8108#0 CGTCGCTGCTCTCCCCGACTCCCCGTCCTCCTTCCCTGCGACGACGGCGGCGGCGGCGGC 60
consensus_8108#1 ------------------------------------------------------------
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 GGTGGCGTGGCGGCTCTTTGTCAAGGTAATTTATCCTATTCGCAAAACTGGTACATCAGG 120
consensus_8108#1 ------------------------------------------------------------
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 AGAAATAACCAAGTGAACGTGATAGTAGTATACCACTGGTAGTGCACCACGGCAAAGCGA 180
consensus_8108#1 ------------------------------------------------------------
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 GGTGTCCTGATTCCTGAACAGCAGGATGCGGTTTGCGGTGACAAAAGTATGTGGTGGTGG 240
consensus_8108#1 ------------------------------------------------------------
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 GGCAAAGGCACGGGCAGGCATGCTCCAGATTGCTGGCAGTAACATTGAAACACCAGCGCT 300
consensus_8108#1 ------------------------------------------------------------
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 ACTTCTGTCCACACGCAAGGGGCTTCCAGCATTTGTGTCCCGTGATCTCCTTGCATCCCT 360
consensus_8108#1 ------------------------------------------------------------
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 CTCTCTCCCTGACTCTCTCCTTCTCCATGTGTGCCCTACCCATTTTATGGAAGGCCCTCC 420
consensus_8108#1 ------------------------------------------------------------
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 ATCAAAAACAATATCAAATATTAGTGGTTTGCATCATATGTTGGGTCTTCCTGATCATAT 480
consensus_8108#1 ------------------------------------------------------------
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 CCTCATAGCCGCAGCTGGTGATTCTATTGAGAGTTTACCAACAAGTGAAGCAAGCAATAA 540
consensus_8108#1 ------------------------------------------------------------
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 ATTTGGTGCTTCCTTTGAGACACCAGCTGGCCGAAGACTGGTTAAACCATCAGATTATAT 600
consensus_8108#1 ------------------------------------------------------------
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 GGAATTGATTTCCTGCATGAAGCCTAATTTGTGGGCAAGTTTGGCAGATGAGGTTCCAGC 660
consensus_8108#1 ------------------------------------------------------------
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 TTGGGTTACTGAGAAACGAAATAAAGTCTCTGTTGAGCGCACATTACGCTGGCTTGATGC 720
consensus_8108#1 ------------------------------------------------------------
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 ATGTATTGCTTTGGATGAGGATTCTGGTGCAAATACTTTAGGTGTAGTTGTGGGTGGATC 780
consensus_8108#1 ------------------------------------------------------------
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 TAGTATAGAACTACGGAAGCTATGTGCCACTGAAGTGTCAAAGAGGAATGTGTCAGGTTT 840
consensus_8108#1 ------------------------------------------------------------
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 TTGGATAGGAGGGTTGGGCTTTGGAGACAGTCCTGAAGAACGTTGCAGTATACTCGATGC 900
consensus_8108#1 ------------------------------------------------------------
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 TGCAGTGGGTTGCTTGCCTCCGGAGAAACCTCGAGTTGTCTCTAGGCTTGGTCTTCCAGA 960
consensus_8108#1 --------------------------------AGGACGAGACAAGGGG-GGTCTTCCAGA 27
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 GGAGGTTTTGGAGGGTGTAGCTGCTGGTATCGACCTCTTTGACTCTACGTACATTTACCA 1020
consensus_8108#1 GGAGGTTTTGGAGGGTGTAGCTGCTGGTATCGACCTCTTTGACTCTACGTACATTTACCA 87
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 GCTTACTATGGGTGGTTTCGCACTGATCTTCCCCATTGACATGGTTGGAGAAAAGATGCA 1080
consensus_8108#1 GCTTACTATGGGTGGTTTCGCACTGATCTTCCCCATTGACATGGTTGGAGAAAAGATGCA 147
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 GAATGGTTCACTCAACAGTAGTGATGGAGATTTTACAAAGATTAATCTGCGTGCAACGAC 1140
consensus_8108#1 GAATGGTTCACTCAACAGTAGTGATGGAGATTTTACAAAGATTAATCTGCGTGCAACGAC 207
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 ATATCGGAAAGACACGTCAAGGATAGTTGATAGCTGTAGCTGTTTCACATGCCAGAACCA 1200
consensus_8108#1 ATATCGGAAAGACACGTCAAGGATAGTTGATAGCTGTAGCTGTTTCACATGCCAGAACCA 267
consensus_8108#2 ------------------------------------------------------------
consensus_8108#0 CACTCGTGCTTACCTTAATCATTTGCTCAATGTCCATGAGATGCTGGCTCAGATTCTACT 1260
consensus_8108#1 CACTCGTGCTTACCTTAATCATTTGCTCAATGTCCATGAGATGCTGGCTCAGATTCTACT 327
consensus_8108#2 --------------------------------------------TGCCATGGACTGAA-- 14
** * ** * *
consensus_8108#0 GGAGATACACAATACACATCATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAA 1320
consensus_8108#1 GGAGATACACAATACACATCATTACCTTTGCTTTTTCCGGTTGATACGAGACACGATCAA 387
consensus_8108#2 -GGAGTAGAAAAT-TTCATCATTACCTTTGCTTTTTCCGGCTGATACGAGACACGATCAA 72
* ** * *** ************************ *******************
consensus_8108#0 AACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGC 1380
consensus_8108#1 AACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGC 447
consensus_8108#2 AACCGGACAGTTTGATCGCTTTCGGCAGCAGTTTGTTCAGGACAGGCGTGCTTATCTTGC 132
************************************************************
consensus_8108#0 AGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTAGACCTCTTGA 1440
consensus_8108#1 AGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTAGATCTCTTGA 507
consensus_8108#2 AGCTGCTGTGATCTAACAAGGATTAACTTCTCCCTAGATGTACACTGTTATACCTCTTGA 192
************************************************** * *******
consensus_8108#0 GGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCC 1500
consensus_8108#1 GGCTTTCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCC 567
consensus_8108#2 GGCTTGCATCAAACTAAATTGAGAAAGCTGCAAGTTAGATTCATTCAAATCCACAATCCC 252
***** ******************************************************
consensus_8108#0 TCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAA 1560
consensus_8108#1 TCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAA 627
consensus_8108#2 TCTCTTCGAAAATCCAAGTGACTGAACAACTTTTTGCAAATCCCTGGAAAGAAAGAAGAA 312
************************************************************
consensus_8108#0 AGGAACAAATAGATAGTGCTAGATGGCTGAATTATTAACTTGCCTTTGG-ATGAATTTTC 1619
consensus_8108#1 ATGAACAAATAGATAGTGCTAGATGGCTGAATTATTAACTTGCCTTTGGGATGAATTTTC 687
consensus_8108#2 AGGAACAAAA-------------------------------------------------- 322
* *******
consensus_8108#0 AGAAATTTTCGGGTTCATTAGTCAGTTTGTGTGCTAACTGTTCATGTTATTATAGCTG 1677
consensus_8108#1 AGAAATTTTTCG---------------------------------------------- 699
consensus_8108#2 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||