These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8114#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1442 fasta sequence [CCTCCACCCGCCGCTTCGTCGCCCCTCGCCTCCGCTCCCTCCTCGCCGGGTTCGACAGCCTCCGCCGGCCGTACCGAGCCTTCCCCATTGTCGCGTCGAACCGGCACGTCGAGACCATCTTCGCCGCCTTCGCGCGGTCGCTCCCGGCCGTCGCGCTCCGCCGCGAGTGCCTCCGCACGCCCGACGATGGCGCCGTCGCGCTCGACTGGGTCTCCGGCGACGACCGTGCGCTTCCGCGGGACGCGCCGGTGCTCATACTCCTGCCTGGTCTAACAGGGGGAAGTGATGATACATATGTAAGGCATATGCTGTTAAGAGCTAGAAACAAAGGATGGCGCGTGGTGGTGTTTAACAGCCGTGGATGTGCAGGCAGTCCAGTGACTACAGCCAAGTTCTATTCGGCATCATTTACTGGAGATCTCCGGCAAGTAGTTGATCATGTTTTAGGACGTTTTCCTCAATCTAACGTTTATGCTGTTGGCTGGTCTCTTGGAGCAAACATTCTTGTGCGCTACCTTGGAGAGGAAACTGATAAATGTGTTCTTTCTGGAGCTGTGTCTTTGTGCAATCCATTCGATTTGGTAATTGCAGATGAAGATTTCCACAAAGGATTTAACAATGTCTATGACAGAGCCCTTGCTAAGGCTCTGAGGAATATATTTAAGAAGCATGCACTTCTTTTTGAAGGATTGGAAGGTGAATATAATATACCAAAGGCAGCGAATGCAAGATCAGTTAGAGACTTTGATGAAGGGCTAACCCGAGTTTCATTTGGCTTCAAGTCTGTGGATGATTATTACTCCAACTCAAGCAGCTCAGATTCCATAAAAAATGTTTCCATACCCTTATTGTGCATACAGGCGGATAATGACCCAATTGCACCATCTAGGGGAATTCCCAGAGAAGATATCAAGGCGAACCCGAACTGCCTACTGATAGTAACACCACAGGGTGGTCACCTTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAATGGAGTTTTTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCATATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCCGTGCATGTGCAGCGATAGTAACGTTTCTCTTGCCAGATTTTTCCATTCACTAGGCATGTTTTGTGCACATAGTTGTTAGGTCGAGATGCTCTACAGTGCTCCAGGATGACAGGTTCTACGTTATTGAGTTGTGACGATATTGTCGCGGCCTGCAGTCTGGGATTCTTTACAGATTTATGGGCTTTGCCTGTTCAACTAATTTTAATATTTATTCCGTATTGACCATTGCCGATACGTGCTGTATAAAACAGGTATAAACCAGTATATCGATCGTGTTGTTAATATACATCCTACAACTATACGTCTATAAAAAAAAAG] [+] EMBL CB641492 [CCTCCACCCGCCGCTTCGTCGCCCCTCGCCTCCGCTCCCTCCTCGCCGGGTTCGACAGCCTCCGCCGGCCGTACCGAGCCTTCCCCATTGTCGCGTCGAACCGGCACGTCGAGACCATCTTCGCCGCCTTCGCGCGGTCGCTCCCGGCCGTCGCGCTCCGCCGCGAGTGCCTCCGCACGCCCGACGATGGCGCCGTCGCGCTCGACTGGGTCTCCGGCGACGACCGTGCGCTTCCGCGGGACGCGCCGGTGCTCATACTCCTGCCTGGTCTAACAGGGGGAAGTGATGATACATATGTAAGGCATATGCTGTTAAGAGCTAGAAACAAAGGATGGCGCGTGGTGGTGTTTAACAGCCGTGGATGTGCAGGCAGTCCAGTGACTACAGCCAAGTTCTATTCGGCATCATTTACTGGAGATCTCCGGCAAGTAGTTGATCATGTTTTAGGACGTTTTCCTCAATCTAACGTTTATGCTGTTGGCTGGTCTCTTGGAGCAAACATTCTTGTGCGCTACCTTGGAGAGGAAACTGATAAATGTGTTCTTTCTGGAGCTGTGTCTTTGTGCAATCCATTCGATTTGGTAATTGCAGATGAAGATTTCCACAAAGGATTTAACAATGTCTATGACAGAGCCCTTGCTAAGGCTCTGAGGAATATATTTAAGAAGCATGCACTTCTTTTTGAAGGATTGGAAGGTGAATATAATATACCAAAGGCAGCGAATGCAAGATCAGTTAGAGACTTTGATGAAGGGCTAACCCGAGTTTCATTTGGCTTCAAGTCTGTGGATGATTATTACTCCNACTC ] [-] EMBL CB641493 [ TTAAGAAGCATGCACTTCTTTTTGAAGGATTGGAAGGTGAATATAATATACCAAAGGCAGCGAATGCAAGATCAGTTAGAGACTTTGATGAAGGGCTAACCCGAGTTTCATTTGGCTTCAAGTCTGTGGATGATTATTACTCCAACTCAAGCAGCTCAGATTCCATAAAAAATGTTTCCATACCCTTATTGTGCATACAGGCGGATAATGACCCAATTGCACCATCTAGGGGAATTCCCAGAGAAGATATCAAGGCGAACCCGAACTGCCTACTGATAGTAACACCACAGGGTGGTCACCTTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAATGGAGTTTTTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCATATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCCGTGCATGTGCAGCGATAGTAACGTTTCTCTTGCCAGATTTTTCCATTCACTAGGCATGTTTTGTGCACATAGTTGTTAGGTCGAGATGCTCTACAGTGCTCCAGGATGACAGGTTCTACGTTATTGAGTTGTGACGATATTGTCGCGGCCTGCAGTCTGGGATTCTTTACAGATTTATGGGCTTTGCCTGTTCAACTAATTTTAATATTTATTCCGTATTGACCATTGCCGATACGTGCTGTATAAAACAGGTATAAACCAGTATATCGATCGTGTTGTTAATATACATCCTACAACTATACGTCTATAAAAAAAAAG] [-] EMBL AU174839 [ GACTTTGATGAAGGGCTAACCCGAGTTTCATTTGGCTTCAAGTCTGTGGATGATTATTACTCCAACTCAAGCAGCTCAGATTCCATAAAAAATGTTTCCATACCCTTATTGTGCATACAGGCGGATAATGACCCAATTGCACCATCTAGGGGAATTCCCAGAGAAGATATCAAGGCGAACCCGAACTGCCTACTGATAGTAACACCACAGGGTGGTCACCTTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAATGGAGTTTTTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCATATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCCGTGCATGTGCAG ] [-] EMBL AU174838 [ CGAACTGCCTACTGATAGTAACACCACAGGGTGGTCACCTTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAATGGAGTTTTTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCATATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCCGTGCATGTGCAGCGATAGTAACGTTTCTCTTGCCAGATTTTTCCATTCACTAGGCATGTCTTGTGCACATAGTTGTTAGGTCGAGATGCTCTACAGTGCTCCAGGATGACAGGTTCTACGTTATTGAGTTGTGACGATATTGTCGCGGCCTGCAGTCTGGGATTCTTTACAGATTTATGGGCTTTGCCTGTTCAACTAATTTTAATATTTATTCCGTATTGACCATTGCCGATACGTGCTGTATAAAAC GGTATA ] consensusID : consensus_8114#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [GATTATTACTCCAAGTCAAGCAGCTCAGATTCCATAAAAAATGTTTCCATACCCTTATAGTGCATACAGGCGGATAATGACCCAATTGCACCATCTAGGGGAATTCCCTGTGAAGATATCAAGGCGAACCCGAACTGCCTACTGATAGTAACACCACAGGGTGGTCCCCTTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAATGGAGTTTGTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCATATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCTGTGCATGTGCAGCGATAGTAACGTTTCTCTTGCCAGATTTTTCCATTCTCTAGGCATGTCTTGTGCACATAGTTGTTAGGTCGAGATGCTTTTCAGTGCTCCAGGATGACAGGTACATGATCAAATTTCATGCACCCCTAGTTTTGTTCCTAAGTATAAATATTTTCTGTTCTTCCATCAATAGTTTGATGAATATTGTTCGCTATGCCTCTGCTTTACTTGTGCAGGTTGTACGTTATTGAGTTGTGACGATATTGTCGCGGCCTGCAGTCTGGGATTCTTTACAGATTTATGGGCTTTGCCTGTTCAACTAATTTTAATATT] [-] EMBL CB624182 [GATTATTACTCCAAGTCAAGCAGCTCAGATTCCATAAAAAATGTTTCCATACCCTTATAGTGCATACAGGCGGATAATGACCCAATTGCACCATCTAGGGGAATTCCCTGTGAAGATATCAAGGCGAACCCGAACTGCCTACTGATAGTAACACCACAGGGTGGTCCCCTTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAATGGAGTTTGTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCATATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCTGTGCATGTGCAGCGATAGTAACGTTTCTCTTGCCAGATTTTTCCATTCTCTAGGCATGTCTTGTGCACATAGTTGTTAGGTCGAGATGCTTTTCAGTGCTCCAGGATGACAGGTACATGATCAAATTTCATGCACCCCTAGTTTTGTTCCTAAGTATAAATATTTTCTGTTCTTCCATCAATAGTTTGATGAATATTGTTCGCTATGCCTCTGCTTTACTTGTGCAGGTTGTACGTTATTGAGTTGTGACGATATTGTCGCGGCCTGCAGTCTGGGATTCTTTACAGATTTATGGGCTTTGCCTGTTCAACTAATTTTAATATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8114#0 CCTCCACCCGCCGCTTCGTCGCCCCTCGCCTCCGCTCCCTCCTCGCCGGGTTCGACAGCC 60 consensus_8114#1 ------------------------------------------------------------ consensus_8114#0 TCCGCCGGCCGTACCGAGCCTTCCCCATTGTCGCGTCGAACCGGCACGTCGAGACCATCT 120 consensus_8114#1 ------------------------------------------------------------ consensus_8114#0 TCGCCGCCTTCGCGCGGTCGCTCCCGGCCGTCGCGCTCCGCCGCGAGTGCCTCCGCACGC 180 consensus_8114#1 ------------------------------------------------------------ consensus_8114#0 CCGACGATGGCGCCGTCGCGCTCGACTGGGTCTCCGGCGACGACCGTGCGCTTCCGCGGG 240 consensus_8114#1 ------------------------------------------------------------ consensus_8114#0 ACGCGCCGGTGCTCATACTCCTGCCTGGTCTAACAGGGGGAAGTGATGATACATATGTAA 300 consensus_8114#1 ------------------------------------------------------------ consensus_8114#0 GGCATATGCTGTTAAGAGCTAGAAACAAAGGATGGCGCGTGGTGGTGTTTAACAGCCGTG 360 consensus_8114#1 ------------------------------------------------------------ consensus_8114#0 GATGTGCAGGCAGTCCAGTGACTACAGCCAAGTTCTATTCGGCATCATTTACTGGAGATC 420 consensus_8114#1 ------------------------------------------------------------ consensus_8114#0 TCCGGCAAGTAGTTGATCATGTTTTAGGACGTTTTCCTCAATCTAACGTTTATGCTGTTG 480 consensus_8114#1 ------------------------------------------------------------ consensus_8114#0 GCTGGTCTCTTGGAGCAAACATTCTTGTGCGCTACCTTGGAGAGGAAACTGATAAATGTG 540 consensus_8114#1 ------------------------------------------------------------ consensus_8114#0 TTCTTTCTGGAGCTGTGTCTTTGTGCAATCCATTCGATTTGGTAATTGCAGATGAAGATT 600 consensus_8114#1 ------------------------------------------------------------ consensus_8114#0 TCCACAAAGGATTTAACAATGTCTATGACAGAGCCCTTGCTAAGGCTCTGAGGAATATAT 660 consensus_8114#1 ------------------------------------------------------------ consensus_8114#0 TTAAGAAGCATGCACTTCTTTTTGAAGGATTGGAAGGTGAATATAATATACCAAAGGCAG 720 consensus_8114#1 ------------------------------------------------------------ consensus_8114#0 CGAATGCAAGATCAGTTAGAGACTTTGATGAAGGGCTAACCCGAGTTTCATTTGGCTTCA 780 consensus_8114#1 ------------------------------------------------------------ consensus_8114#0 AGTCTGTGGATGATTATTACTCCAACTCAAGCAGCTCAGATTCCATAAAAAATGTTTCCA 840 consensus_8114#1 -----------GATTATTACTCCAAGTCAAGCAGCTCAGATTCCATAAAAAATGTTTCCA 49 ************** ********************************** consensus_8114#0 TACCCTTATTGTGCATACAGGCGGATAATGACCCAATTGCACCATCTAGGGGAATTCCCA 900 consensus_8114#1 TACCCTTATAGTGCATACAGGCGGATAATGACCCAATTGCACCATCTAGGGGAATTCCCT 109 ********* ************************************************* consensus_8114#0 GAGAAGATATCAAGGCGAACCCGAACTGCCTACTGATAGTAACACCACAGGGTGGTCACC 960 consensus_8114#1 GTGAAGATATCAAGGCGAACCCGAACTGCCTACTGATAGTAACACCACAGGGTGGTCCCC 169 * ******************************************************* ** consensus_8114#0 TTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAA 1020 consensus_8114#1 TTGGATGGGTGGCAGGTGAAGATGCTCCATTTGGATGCCCTTGGACTGACCCAATTATAA 229 ************************************************************ consensus_8114#0 TGGAGTTTTTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCAT 1080 consensus_8114#1 TGGAGTTTGTAGAATATGTTCATAACGAAAAGAACTCTAGTACCAAGGGTAGCATCTCAT 289 ******** *************************************************** consensus_8114#0 ATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCCGTGCATGTGCAGCGAT 1140 consensus_8114#1 ATGAGCAGCAGAGTGTTACACAAACGTCAGCCCCAGATGTCTCTGTGCATGTGCAGCGAT 349 ******************************************* **************** consensus_8114#0 AGTAACGTTTCTCTTGCCAGATTTTTCCATTCACTAGGCATGTTTTGTGCACATAGTTGT 1200 consensus_8114#1 AGTAACGTTTCTCTTGCCAGATTTTTCCATTCTCTAGGCATGTCTTGTGCACATAGTTGT 409 ******************************** ********** **************** consensus_8114#0 TAGGTCGAGATGCTCTACAGTGCTCCAGGATGACAGGTTCTACGTTA----TTGAGTTGT 1256 consensus_8114#1 TAGGTCGAGATGCTTTTCAGTGCTCCAGGATGACAGGTACATGATCAAATTTCATGCACC 469 ************** * ********************* * * * * * consensus_8114#0 GACGATATTGTCGCGGCCTGCAG---TCTGGGATTCTTT-----ACAGATTTATGGGCTT 1308 consensus_8114#1 CCTAGTTTTGTTCCTAAGTATAAATATTTTCTGTTCTTCCATCAATAGTTTGATGAATAT 529 * **** * * * * * ***** * ** ** *** * consensus_8114#0 TGCCTGTTCAACTAATTTTAATATTTATTCCGTATTGACCATTGCCGATACGTGCTGTAT 1368 consensus_8114#1 TGTTCGCTATGCCTCTGCTT-TACTTGTGCAG-GTTGTACGTTATTGAGTTGTG----AC 583 ** * * * * * ** ** * * * *** * ** ** *** * consensus_8114#0 AAAACAGGTATAAACCAGTATATCGATCGTGTTGTTAATATACATCCTACAACTATACGT 1428 consensus_8114#1 GATATTGTCGCGGCCTGCAGTCTGGGATTCTTTACAGATTTATGGGCTTTGCCTGTTCAA 643 * * * * * * * ** ** ** ** ** * * consensus_8114#0 CTATAAAAAAAAAG 1442 consensus_8114#1 CTAATTTTAATATT 657 *** ** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||