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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8118#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 2035 fasta sequence
[ATCCCGCGCGCCTCCCCCACTCGGCGCCTCGCCGCGCGGCCGCCGCCGTCTACCGCCCCACCGGAGCTCCGCCGTGGCCATTTCCTTCGGGCAAGATGAGTTTGATATCGCAGAATCCCATTCAGAAGCGCCGACTGGAGACAATTGAAGCTGATGATGATAGTGACGAGGGATTAGGCTCTCCTGTTGCTGCCGGAGCTGAGGATGGGAATGAAACCAAGTCGGAGAAGCGCAAAAAGGAGAAGAAGCGGAAGAAGGCCAAGGCGCTGGAGGCGCTTGAGGAGAAGGAGAACAAGGAGAGGGAGGAGATGAAGCTGCTAGAGAGCT-CCCTGTTTGGTGCCCTCTATGCGCCGCCTCAGTTTGGCACTGAGGTTGAGGCTGTGGATCCTGACAAGGGTGTGCCTTCATTCTTCATGGATAGGTCTGGTGGTGATGGTGAGGATGATTTGCCCGTCTATGACGAGGGCTTGTCCAGTGAAGACGAGGGGGTTGACATGGTTGGCAGGGAGAGGAAGCCTGCATGGGTGGATGAGGAGGAGGTGACTGAGGTGGACATTTCGAAGGTGGCAAGGTTGAGGAAGTTGAGAAAGGAGGGTGATGAGCGTGTGATCTCAGGGAAAGAGTATGAGGCTAGGTTGCGTGGTCAACATGCCAAGTTGAACCGCTTCGCTGGTTGGGCTGACTTGGACCGTAAAGCTCCTCTTCCTGGGTCGTCTGACAATGAATCTGATGAAGAGGGCAGAGTTGATGATATTCTTCGGAATAATGATGAGCTTGTTGTCAAGGATAATGCTAAGCTCTTACCTGACATGCTAGGGTTCTCAAGACTTGTAGATGCAAATTCCCAGGAACCATCTAGCGGCCCTATCAATTCAGTGCAGTTTCACAGGAATGGGCAACTTATGCTTGTTGCTGGTTTGGACAAGCATCTGAGATTTTTCCAGATTGATGGGAAGAGAAACCCCAAGATCCAGAGCATATTTATTGAGGACTGCCCTGTTCACAAGGCCGCATTTCTGCCTGATGGTTCTGAGGTTATCCTTTCAGGCAGGAGGAAGTTCTTCTACTCATTTGATCTGGTGAATGCTGCTGTTAGTAAGATTGGACCCTTAACAGGACGTGAGGAGAAAAGCCTAGAACACTTTGAGATATCACCCGATTCAAAGACCATTGCATTCATTGGTAATGAGGGGTACATTCTTTTGATTTCTTCCAAAACAAAGCAGCTCATTGGAACCCTCAAGATGAATGGGAATGTGCGTTCATTGGCTTTTGCTGATGGTGGGAATCAGCTACTAAGCAGTGGTGGTGATGGCCATGTGTACCACTGGGATCTCAGGACAAGGAAGTGTATCCACAAGGGTACCGATGAGGGTTCCTTGGCAGGCATTTCGCTTTGCACTTCACCCGACAGCTCTTTGTTTGCCACAGGCTCCACCAGCGGCATTGTGAATGTGTACAAGAGGGATGATTTTCTGGGCGGGAAGAGGAAGCCACTGAAGACGATCGAGAACCTCACAACCGAGATCGGTGAAATGAAGTTCAACCATGATGCCCAGGTTCTGGCGATAAGCTCGAGAAAGGAGAGGAACGGGATGAGGCTTGTG-CACGTCCCATCCCTCACCGTGTTCCAGAACTGGCCAGGGCCTCGGTTCAGCCTCCACTACCCACGGTGCTTGGACTTCAGCCCGGGCAGCGGGTTTTTGTCCGTCGGACATGCTGGTGGAAAGGTTTTGCTGTATAAGCTGCACCACTACCAAAATGCCTAAGATCTGAATGTGTTACTCTTTCCCCTATGGGCTGAAATGTGACCTGGAAAGAAAATTCAACTTTCAACACTGTGTTTCAATTTTGAGAGATATCGATGGTATCTGTAGTCTAGTTCTTCTGAATTCTTTTTTTTTTCTCTCTTTACTTTGGGTGTTGTAATCCCTTACTCTGGTGCTTAATGCAAAGCTGGCAATTTACCCATGTTGTTGCATTTCTTTTATCATGCAAATTGATATATCTGTACCGGTGATTGCTGTGTCAAAAA]
[+] EMBL AK112078 [ATCCCGCGCGCCTCCCCCACTCGGCGCCTCGCCGCGCGGCCGCCGCCGTCTACCGCCCCACCGGAGCTCCGCCGTGGCCATTTCCTTCGGGCAAGATGAGTTTGATATCGCAGAATCCCATTCAGAAGCGCCGACTGGAGACAATTGAAGCTGATGATGATAGTGACGAGGGATTAGGCTCTCCTGTTGCTGCCGGAGCTGAGGATGGGAATGAAACCAAGTCGGAGAAGCGCAAAAAGGAGAAGAAGCGGAAGAAGGCCAAGGCGCTGGAGGCGCTTGAGGAGAAGGAGAACAAGGAGAGGGAGGAGATGAAGCTGCTAGAGAGCT CCCTGTTTGGTGCCCTCTATGCGCCGCCTCAGTTTGGCACTGAGGTTGAGGCTGTGGATCCTGACAAGGGTGTGCCTTCATTCTTCATGGATAGGTCTGGTGGTGATGGTGAGGATGATTTGCCCGTCTATGACGAGGGCTTGTCCAGTGAAGACGAGGGGGTTGACATGGTTGGCAGGGAGAGGAAGCCTGCATGGGTGGATGAGGAGGAGGTGACTGAGGTGGACATTTCGAAGGTGGCAAGGTTGAGGAAGTTGAGAAAGGAGGGTGATGAGCGTGTGATCTCAGGGAAAGAGTATGAGGCTAGGTTGCGTGGTCAACATGCCAAGTTGAACCGCTTCGCTGGTTGGGCTGACTTGGACCGTAAAGCTCCTCTTCCTGGGTCGTCTGACAATGAATCTGATGAAGAGGGCAGAGTTGATGATATTCTTCGGAATAATGATGAGCTTGTTGTCAAGGATAATGCTAAGCTCTTACCTGACATGCTAGGGTTCTCAAGACTTGTAGATGCAAATTCCCAGGAACCATCTAGCGGCCCTATCAATTCAGTGCAGTTTCACAGGAATGGGCAACTTATGCTTGTTGCTGGTTTGGACAAGCATCTGAGATTTTTCCAGATTGATGGGAAGAGAAACCCCAAGATCCAGAGCATATTTATTGAGGACTGCCCTGTTCACAAGGCCGCATTTCTGCCTGATGGTTCTGAGGTTATCCTTTCAGGCAGGAGGAAGTTCTTCTACTCATTTGATCTGGTGAATGCTGCTGTTAGTAAGATTGGACCCTTAACAGGACGTGAGGAGAAAAGCCTAGAACACTTTGAGATATCACCCGATTCAAAGACCATTGCATTCATTGGTAATGAGGGGTACATTCTTTTGATTTCTTCCAAAACAAAGCAGCTCATTGGAACCCTCAAGATGAATGGGAATGTGCGTTCATTGGCTTTTGCTGATGGTGGGAATCAGCTACTAAGCAGTGGTGGTGATGGCCATGTGTACCACTGGGATCTCAGGACAAGGAAGTGTATCCACAAGGGTACCGATGAGGGTTCCTTGGCAGGCATTTCGCTTTGCACTTCACCCGACAGCTCTTTGTTTGCCACAGGCTCCACCAGCGGCATTGTGAATGTGTACAAGAGGGATGATTTTCTGGGCGGGAAGAGGAAGCCACTGAAGACGATCGAGAACCTCACAACCGAGATCGGTGAAATGAAGTTCAACCATGATGCCCAGGTTCTGGCGATAAGCTCGAGAAAGGAGAGGAACGGGATGAGGCTTGTG CACGTCCCATCCCTCACCGTGTTCCAGAACTGGCCAGGGCCTCGGTTCAGCCTCCACTACCCACGGTGCTTGGACTTCAGCCCGGGCAGCGGGTTTTTGTCCGTCGGACATGCTGGTGGAAAGGTTTTGCTGTATAAGCTGCACCACTACCAAAATGCCTAAGATCTGAATGTGTTACTCTTTCCCCTATGGGCTGAAATGTGACCTGGAAAGAAAATTCAACTTTCAACACTGTGTTTCAATTTTGAGAGATATCGATGGTATCTGTAGTCTAGTTCTTCTGAATTCTTTTTTTTTTCTCTCTTTACTTTGGGTGTTGTAATCCCTTACTCTGGTGCTTAATGCAAAGCTGGCAATTTACCC ]
[-] EMBL BI810643 [ CCCCACCGGAGCTCCGCCGTGGCCATTTCCTTCGGGCAAGATGAGTTTGATATCGCAGAATCCCATTCAGAAGCGCCGACTGGAGACAATTGAAGCTGATGATGATAGTGACGAGGGATTAGGCTCTCCTGTTGCTGCCGGAGCTGAGGATGGGAATGAAACCAAGTCGGAGAAGCGCAAAAAGGAGAAGAAGCGGAAGAAGGCCAAGGCGCTGGAGGCGCTTGAGGAGAAGGAGAACAAGGAGAGGGAGGAGATGAAGCTGCTAGAGAGCTCCCCTGTTTGGTGCCCTCTATGCGCCG CTCAGTTTGGCACTGAGGTTGAGGCTGTGGATCCTGACAAGGGTGTGCCTTCATTCTTCATGGATAGGTCTGGTGGTGATGGTGAGGATGATTTGCCCGTCTATGACGAGGGCTTGTCCAGTGAAGACGAGGGGGATGACATGGTTGGCAGGGAGAGGAAG CTG ATGGGTGGATGAGGAGGAGGTGACTGAGGTGGACATTTCGAA GTGG AAG ]
[+] EMBL CA757388 [ CAAGATCCAGAGCATATTTATTGAGGACTGCCCTGTTCACAAGGCCGCATTTCTGCCTGATGGTTCTGAGGTTATCCTTTCAGGCAGGAGGAAGTTCTTCTACTCATTTGATCTGGTGAATGCTGCTGTTAGTAAGATTGGACCCTTAACAGGACGTGAGGAGAAAAGCCTAGAACACTTTGAGATATCACCCGATTCAAAGACCATTGCATTCATTGGTAATGAGGGGTACATTCTTTTGATTTCTTCCAAAACAAAGCAGCTCATTGGAACCCTCAAGATGAATGGGAATGTGCGTTCATTGGCTTTTGCTGATGGTGGGAATCAGCTACTAAGCAGTGGTGGTGATGGCCATGTGTACCACTGGGATCTCAGGACAAGGAAGTGTATCCACAAGGGTACCGATGAGGGTTCCTTGGCAGGCATTTCGCTTTGCACTTCACCCGACAGCTCTTTGTTTGCCACAGGCTCCACCAGCGGCATTGTGAATGTGTACAAGAGGGATGATTTTCTGGGCGGGAAGAGGAAGCCACTGAAGACCATCGAGAACCTCACAACCGAGATCGGTGAAATGAAGNTCAACCATGATGCCCAGGTTCTGGCGATAAGCTCGAGAAAGGAGAGGAACGGGATGAGGCTTGTGCCACGTCCa ]
[+] EMBL AU162788 [ CAACCGAGATCGGTGAAATGAAGTTCAACCATGATGCCCAGGTTCTGGCGATAAGCTCGAGAAAGGAGAGGAACGGGATGAGGCTTGTG CACGTCCCATCCCTCACCGTGTTCCAGAACTGGCCAGGGCCTCGGTTCAGCCTCCACNACCCACGGTGCTTGGACTTCAGCCCGGGCAGCGGGTTTTTGTCCGTCGGACATGCTGGTGGAAAGGTTTTGCTGTATAAGCTGCACCACTACCAAAATGCCTAAGATCTGAATGTGTTACTCTTTCCCCTATGGGCTGAAATGTGACCTGGAAAGAAAATTCAACTTTCAACACTGTGTTTCAATTTTGAGAGATATCGATGGTATCTGTAGTCTAGTTCTTCTGAATTCTTTTTTTTTTCTCTCTTTACTTTGGGTGTTGTAATCCCTTACTCTGGTGCTTAATGCAAAGCTGGCAATTTACCCATGTTGTTGCATTTCTTTTATCATGCAAATTGATATATCTGTACCGGTGATTGCTGTGTCAAAAA]
consensusID : consensus_8118#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence
[TCGTAAGCTTGTGATCCTCTAAGCTGGGCGCGCGTCTACCGCCCACCGGAGCTCCGCCGTGGCATTTCCTTCGGGCCAGATGAGTTTTGATATCTGCAGAATCCCATTCAGAAGCGCCGACTGGAGACAATTGAAGCTGATGATGATCGTGACGAGGGATTAGGCTCTCCTGTTGGCTTGCCGTGATGGCTTGACGTGACTTGTGTGGAC]
[-] EMBL BI810795 [TCGTAAGCTTGTGATCCTCTAAGCTGGGCGCGCGTCTACCGCCCACCGGAGCTCCGCCGTGGCATTTCCTTCGGGCCAGATGAGTTTTGATATCTGCAGAATCCCATTCAGAAGCGCCGACTGGAGACAATTGAAGCTGATGATGATCGTGACGAGGGATTAGGCTCTCCTGTTGGCTTGCCGTGATGGCTTGACGTGACTTGTGTGGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8118#0 ATCCCGCGCGCCTCCCCCACTCGGCGCCTCGCCGCGCGGCCGCCGCCGTCTACCGCCCCA 60
consensus_8118#1 ------------TCGTAAGCTTGTGATCCTCTAAGCTGGGCGC--GCGTCTACCGCCC-A 45
** ** * * ** *** ************ *
consensus_8118#0 CCGGAGCTCCGCCGTGGCCATTTCCTTCGGGCAAGATGAGTTT-GATATC-GCAGAATCC 118
consensus_8118#1 CCGGAGCTCCGCCGTGGC-ATTTCCTTCGGGCCAGATGAGTTTTGATATCTGCAGAATCC 104
****************** ************* ********** ****** *********
consensus_8118#0 CATTCAGAAGCGCCGACTGGAGACAATTGAAGCTGATGATGATAGTGACGAGGGATTAGG 178
consensus_8118#1 CATTCAGAAGCGCCGACTGGAGACAATTGAAGCTGATGATGATCGTGACGAGGGATTAGG 164
******************************************* ****************
consensus_8118#0 CTCTCCTGTTGCTGCCGGAGCTGAGGATGGGAATGAAACCAAGTCGGAGAAGCGCAAAAA 238
consensus_8118#1 CTCTCCTGTTG--GCTTGCCGTGATGGCTTGA-CGTGACTTGTGTGGAC----------- 210
*********** ** * *** * ** * ** ***
consensus_8118#0 GGAGAAGAAGCGGAAGAAGGCCAAGGCGCTGGAGGCGCTTGAGGAGAAGGAGAACAAGGA 298
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 GAGGGAGGAGATGAAGCTGCTAGAGAGCTCCCTGTTTGGTGCCCTCTATGCGCCGCCTCA 358
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 GTTTGGCACTGAGGTTGAGGCTGTGGATCCTGACAAGGGTGTGCCTTCATTCTTCATGGA 418
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 TAGGTCTGGTGGTGATGGTGAGGATGATTTGCCCGTCTATGACGAGGGCTTGTCCAGTGA 478
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 AGACGAGGGGGTTGACATGGTTGGCAGGGAGAGGAAGCCTGCATGGGTGGATGAGGAGGA 538
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 GGTGACTGAGGTGGACATTTCGAAGGTGGCAAGGTTGAGGAAGTTGAGAAAGGAGGGTGA 598
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 TGAGCGTGTGATCTCAGGGAAAGAGTATGAGGCTAGGTTGCGTGGTCAACATGCCAAGTT 658
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 GAACCGCTTCGCTGGTTGGGCTGACTTGGACCGTAAAGCTCCTCTTCCTGGGTCGTCTGA 718
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 CAATGAATCTGATGAAGAGGGCAGAGTTGATGATATTCTTCGGAATAATGATGAGCTTGT 778
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 TGTCAAGGATAATGCTAAGCTCTTACCTGACATGCTAGGGTTCTCAAGACTTGTAGATGC 838
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 AAATTCCCAGGAACCATCTAGCGGCCCTATCAATTCAGTGCAGTTTCACAGGAATGGGCA 898
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 ACTTATGCTTGTTGCTGGTTTGGACAAGCATCTGAGATTTTTCCAGATTGATGGGAAGAG 958
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 AAACCCCAAGATCCAGAGCATATTTATTGAGGACTGCCCTGTTCACAAGGCCGCATTTCT 1018
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 GCCTGATGGTTCTGAGGTTATCCTTTCAGGCAGGAGGAAGTTCTTCTACTCATTTGATCT 1078
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 GGTGAATGCTGCTGTTAGTAAGATTGGACCCTTAACAGGACGTGAGGAGAAAAGCCTAGA 1138
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 ACACTTTGAGATATCACCCGATTCAAAGACCATTGCATTCATTGGTAATGAGGGGTACAT 1198
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 TCTTTTGATTTCTTCCAAAACAAAGCAGCTCATTGGAACCCTCAAGATGAATGGGAATGT 1258
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 GCGTTCATTGGCTTTTGCTGATGGTGGGAATCAGCTACTAAGCAGTGGTGGTGATGGCCA 1318
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 TGTGTACCACTGGGATCTCAGGACAAGGAAGTGTATCCACAAGGGTACCGATGAGGGTTC 1378
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 CTTGGCAGGCATTTCGCTTTGCACTTCACCCGACAGCTCTTTGTTTGCCACAGGCTCCAC 1438
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 CAGCGGCATTGTGAATGTGTACAAGAGGGATGATTTTCTGGGCGGGAAGAGGAAGCCACT 1498
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 GAAGACGATCGAGAACCTCACAACCGAGATCGGTGAAATGAAGTTCAACCATGATGCCCA 1558
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 GGTTCTGGCGATAAGCTCGAGAAAGGAGAGGAACGGGATGAGGCTTGTGCACGTCCCATC 1618
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 CCTCACCGTGTTCCAGAACTGGCCAGGGCCTCGGTTCAGCCTCCACTACCCACGGTGCTT 1678
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 GGACTTCAGCCCGGGCAGCGGGTTTTTGTCCGTCGGACATGCTGGTGGAAAGGTTTTGCT 1738
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 GTATAAGCTGCACCACTACCAAAATGCCTAAGATCTGAATGTGTTACTCTTTCCCCTATG 1798
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 GGCTGAAATGTGACCTGGAAAGAAAATTCAACTTTCAACACTGTGTTTCAATTTTGAGAG 1858
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 ATATCGATGGTATCTGTAGTCTAGTTCTTCTGAATTCTTTTTTTTTTCTCTCTTTACTTT 1918
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 GGGTGTTGTAATCCCTTACTCTGGTGCTTAATGCAAAGCTGGCAATTTACCCATGTTGTT 1978
consensus_8118#1 ------------------------------------------------------------
consensus_8118#0 GCATTTCTTTTATCATGCAAATTGATATATCTGTACCGGTGATTGCTGTGTCAAAAA 2035
consensus_8118#1 ---------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||