cluster # 812

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Oryza sativa
cluster # 812 cluster # 812 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_812#0 length = 199 sequences # 1

consensus_812#1 length = 189 sequences # 1

consensusID : consensus_812#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [TTTTTTTTATAATTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGGAAATTAAACTGGTTTATTACTTGTTCCATTAAAACCACTCACACTCGGGTACCTGGGGAAACCGGGAAAGTTAAAAAACAAAAACCGGCTTTGTAAAGGGAGGCCCTGGTCGCTTTTTACTCCTTAAATCCATGTCAGGGTCCAAGGGCGAATTC]

[+] EMBL CF329720             [TTTTTTTTATAATTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGGAAATTAAACTGGTTTATTACTTGTTCCATTAAAACCACTCACACTCGGGTACCTGGGGAAACCGGGAAAGTTAAAAAACAAAAACCGGCTTTGTAAAGGGAGGCCCTGGTCGCTTTTTACTCCTTAAATCCATGTCAGGGTCCAAGGGCGAATTC]




>consensus_812#0
TTTTTTTTATAATTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGGAAATTAAACTGGTTTA
TTACTTGTTCCATTAAAACCACTCACACTCGGGTACCTGGGGAAACCGGGAAAGTTAAAA
AACAAAAACCGGCTTTGTAAAGGGAGGCCCTGGTCGCTTTTTACTCCTTAAATCCATGTC
AGGGTCCAAGGGCGAATTC

consensusID : consensus_812#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGGAAATTAAACTGGTTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGGGAAACCGGGAAAGTTAAAAAACAAAAACCGTTGTTGTAAAGTGAGGCCCTGCTCGCTGTTACATGAAAGGGGCCCGAAAAACCAGCCCACGA]

[+] EMBL CF331001             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGGAAATTAAACTGGTTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGGGAAACCGGGAAAGTTAAAAAACAAAAACCGTTGTTGTAAAGTGAGGCCCTGCTCGCTGTTACATGAAAGGGGCCCGAAAAACCAGCCCACGA]




>consensus_812#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGGAAATTAAACTGGTTTATTA
CTTGTTCCATTAAAACCATCACACTCGGGTACGTGGGGAAACCGGGAAAGTTAAAAAACA
AAAACCGTTGTTGTAAAGTGAGGCCCTGCTCGCTGTTACATGAAAGGGGCCCGAAAAACC
AGCCCACGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_812#0      TTTTTTTTATAATTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGGAAATTAAACTGGTTTA 60
consensus_812#1      ---TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGGAAATTAAACTGGTTTA 57
                        ***** *  ************************************************

consensus_812#0      TTACTTGTTCCATTAAAACCACTCACACTCGGGTACCTGGGGAAACCGGGAAAGTTAAAA 120
consensus_812#1      TTACTTGTTCCATTAAAACCA-TCACACTCGGGTACGTGGGGAAACCGGGAAAGTTAAAA 116
                     ********************* ************** ***********************

consensus_812#0      AACAAAAACCGGCTTTGTAAAGGGAGGCCCTGGTCGCTTTTTACTCCTTAAATCCATGTC 180
consensus_812#1      AACAAAAACCGTTGTTGTAAAGTGAGGCCCTGCTCGCTGTT---ACATGAAAGGGGCCCG 173
                     ***********   ******** ********* ***** **    * * ***        

consensus_812#0      AGGGTCCAAGG-GCGAATTC 199
consensus_812#1      AAAAACCAGCCCACGA---- 189
                     *    ***     ***