cluster # 8121

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Oryza sativa
cluster # 8121 cluster # 8121 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8121#0 length = 194 sequences # 2
consensus_8121#1 length = 186 sequences # 1

consensus_8121#2 length = 175 sequences # 1
consensus_8121#3 length = 160 sequences # 1

consensusID : consensus_8121#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 194
fasta sequence

                              [TTTCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCGCCGACGACTGGTGTCATCTAAGGACT-CAGAGTCGACAGCCCGCCTTCAGGAGAGCAGTTTTTGGGTTATAACCTTATGCCACCAACTCAGGACTGGCCAAGCATAGAATACCGCATAGTTCCAGGATGATAGCCCAAAACCCCGAGAAC]

[+] EMBL D42265               [TTTCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCGCCGACGACTGGTGTCATCTAAGGACT CAGAGTCGACAGCCCGCCTTCAGGAGAGCAGTTTTTGGGTTATAACCTTATGCCACCAACTCAGGACTGGCCAAGCATAGAATACCGCATAGTTCCAGGAT                      ]
[+] EMBL D42280               [            TGAGATCAAAGACTCAAAGCTACCAAGACGGCCCCGA GACTGGTGTCATCTAAGGACTCCAGAGTCGACAGCCCGCCTCCAGGAGAGCAGTTTTTGGGTTATAA CTTATCCCACCAACTCAGGACTGGCCAAGCATAGAATCCCGCATAGTTCCAGGATGATAGCCCAAAACCCCGAGAAC]




>consensus_8121#0
TTTCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCGCCGACGACTGGTGTC
ATCTAAGGACTCAGAGTCGACAGCCCGCCTTCAGGAGAGCAGTTTTTGGGTTATAACCTT
ATGCCACCAACTCAGGACTGGCCAAGCATAGAATACCGCATAGTTCCAGGATGATAGCCC
AAAACCCCGAGAAC

consensusID : consensus_8121#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 186
fasta sequence

                              [CCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCACGAGCACTGGTGTCATCTAAGGACTCCAGACTCGACAGCCCGCCTCCAGAGAGCAGTTTTTGGTTTATAACTTTATGCAACCAACTCAGGACTGGCAAGCATAGAATCCCGCATAAGTTCCAGGATGATAGCCCAAAGCCCGA]

[+] EMBL D42187               [CCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCACGAGCACTGGTGTCATCTAAGGACTCCAGACTCGACAGCCCGCCTCCAGAGAGCAGTTTTTGGTTTATAACTTTATGCAACCAACTCAGGACTGGCAAGCATAGAATCCCGCATAAGTTCCAGGATGATAGCCCAAAGCCCGA]




>consensus_8121#1
CCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCACGAGCACTGGTGTCATC
TAAGGACTCCAGACTCGACAGCCCGCCTCCAGAGAGCAGTTTTTGGTTTATAACTTTATG
CAACCAACTCAGGACTGGCAAGCATAGAATCCCGCATAAGTTCCAGGATGATAGCCCAAA
GCCCGA

consensusID : consensus_8121#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 175
fasta sequence

                              [TTCCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCCCGAGCACTGGTGTCATCTAAGGACTCCAGAGTGACAGCCGCTCAGGAGAGCAGTTTTTGGGTTATAACTTTATCGAACCACTCAGGACTGGCAGATAGATCGCCGATAGAATCCGCGATAGTTCCAGGAT]

[+] EMBL D42208               [TTCCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCCCGAGCACTGGTGTCATCTAAGGACTCCAGAGTGACAGCCGCTCAGGAGAGCAGTTTTTGGGTTATAACTTTATCGAACCACTCAGGACTGGCAGATAGATCGCCGATAGAATCCGCGATAGTTCCAGGAT]




>consensus_8121#2
TTCCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCCCGAGCACTGGTGTCA
TCTAAGGACTCCAGAGTGACAGCCGCTCAGGAGAGCAGTTTTTGGGTTATAACTTTATCG
AACCACTCAGGACTGGCAGATAGATCGCCGATAGAATCCGCGATAGTTCCAGGAT

consensusID : consensus_8121#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 160
fasta sequence

                              [CCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGAGCACGAGCACTGGTGTCATCTAAGGACTCCAGAGTCGACAGCCCGCCTCCAAGGAGAGCAGTTTTTGGGTTATAACCTTATCGAACAACTAGGACTGGCAAGACAGAACCCGAAGCCAAGG]

[+] EMBL D42190               [CCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGAGCACGAGCACTGGTGTCATCTAAGGACTCCAGAGTCGACAGCCCGCCTCCAAGGAGAGCAGTTTTTGGGTTATAACCTTATCGAACAACTAGGACTGGCAAGACAGAACCCGAAGCCAAGG]




>consensus_8121#3
CCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGAGCACGAGCACTGGTGTCATCT
AAGGACTCCAGAGTCGACAGCCCGCCTCCAAGGAGAGCAGTTTTTGGGTTATAACCTTAT
CGAACAACTAGGACTGGCAAGACAGAACCCGAAGCCAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8121#2      TTCCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACG-GCCCGAGCACTGGTGTC 59
consensus_8121#3      ----CCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGAGCACGAGCACTGGTGTC 56
consensus_8121#0      TTTCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCGCCGACGACTGGTGTC 60
consensus_8121#1      --CCCCAAGCAATGAGATCAAAGACTCAAAGCTACCAAGACGGCAC-GAGCACTGGTGTC 57
                          **************************************     **  *********

consensus_8121#2      ATCTAAGGACTCCAGAGT-GACAGC----CGCTCAGGAGAGCAGTTTTTGGGTTATAACT 114
consensus_8121#3      ATCTAAGGACTCCAGAGTCGACAGCCCGCCTCCAAGGAGAGCAGTTTTTGGGTTATAACC 116
consensus_8121#0      ATCTAAGGACTC-AGAGTCGACAGCCCG-CCTTCAGGAGAGCAGTTTTTGGGTTATAACC 118
consensus_8121#1      ATCTAAGGACTCCAGACTCGACAGCCCG-CCTCCAG-AGAGCAGTTTTTGGTTTATAACT 115
                      ************ *** * ******    *    ** ************** ******* 

consensus_8121#2      TTAT-CGAACCACTCAGGACTGGC--A-GATAGATCGCCG-ATAGAATCCGCGATAGTTC 169
consensus_8121#3      TTAT-CGAACAACT-AGGACTGGC--AAGACAGAACCC------GAAGCCAAGG------ 160
consensus_8121#0      TTATGCCACCAACTCAGGACTGGCCAAGCATAGAATACCGCATA-GTTCCAGGATGATAG 177
consensus_8121#1      TTATGCAACCAACTCAGGACTGGC-AAGCATAGAATCCCGCATAAGTTCCAGGATGATAG 174
                      **** * * * *** *********  *  * ***   *          **  *       

consensus_8121#2      CAGGAT----------- 175
consensus_8121#3      -----------------
consensus_8121#0      CCCAAAACCCCGAGAAC 194
consensus_8121#1      CCCAAAGCCCGA----- 186