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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8124#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1009 fasta sequence
[TCTTTTTTTTACAGAGCCAAATAAATGTCCAGATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGTTGCATTAATACATAGTATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCTACCTCCCTTCCCTGTCAGCCCAGCTCATCTCACAACAAGTCTGTTTTGCCTCCCTAAGCTCAGAGCTGCAGCCAACCAAGCAACCTCCTCAGCCAAAGTCTGTATTCCCTCCCCAGCCGACCTGGCAGCCACTCATGCTCTCTTTCTCAGCCAACCACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATAAATTGCCCACAAGCCACAACAGGGTTTCACACCCACTTTTGCCGGCACAACACAGAGTCTTGCACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAGCAATACATTCACCATGAACCCAATCCACAAAACCCTCCACCAAATACATGCAACCACAGAACCAAGTTCACTGAGAAGGGCAACGCCAAGATCACACCGAAAGGTGGCAAAGCCAAGTACGATGGGCCATGCGTACCTGGTAGTGTGGCGATGTCGACGTTTTGGCACTGCTCCCTGCCCACCCTCACATCGCCTCCCATGCACAGGCAGCCAGCAAACCTATATAAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCACTCCTCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACGGATAGGCTGCCGCACCATTGATCACCCGAGAACGACTAACTTTAACATCTAACCCTTGACTCACTAACCAGCTAACCTTTTTCTTTCTGTTTCACTGACTCTTCCATTTTCAGTTTCGCTAACCTCTGACTCTCTAACTCTTTCTTTTTGGA]
[+] EMBL CB674519 [TCTTTTTTTTACAGAGCCAAATAAATGTCCAGATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGTTGCATTAATACATAGTATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCTACCTCCCTTCCCTGTCAGCCCAGCTCATCTCACAACAAGTCTGTTTTGCCTCCCTAAGCTCAGAGCTGCAGCCAACCAAGCAACCTCCTCAGCCAAAGTCTGTATTCCCTCCCCAGCCGACCTGGCAGCCACTCATGCTCTCTTTCTCAGCCAACCACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATAAATTGCCCACAAGCCACAACAGGGTTTCACACCCACTTTTGCCGGCACAACACAGAGTCTTGCACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAGCAATACATTCACCATGAACCCAATCCACAAAACCCTCCACCAAATACATGCAACCACAGAACCAAGTTCACTGAGAAGGGCAACGCCAAGATCACACCGAAAGGTGGCAAAGCCAAGTACGATGGGCCATGCGTACCTGGTAGTGTGGCGATGTCGACGTTTTGGCACTGCTCCCTGCCCACCCTCACATCGCCTCCCATGCACAGGCAGCCAGCAAACCTATATAAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCACTCCTCAGTCCCGTGCACAAGCTGCCATCC ]
[-] EMBL AK112058 [ ATAAATGTCCAGATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGTTGCATTAATACATAGTATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCTACCTCCCTTCCCTGTCAGCCCAGCTCATCTCACAACAAGTCTGTTTTGCCTCCCTAAGCTCAGAGCTGCAGCCAACCAAGCAACCTCCTCAGCCAAAGTCTGTATTCCCTCCCCAGCCGACCTGGCAGCCACTCATGCTCTCTTTCTCAGCCAACCACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATAAATTGCCCACAAGCCACAACAGGGTTTCACACCCACTTTTGCCGGCACAACACAGAGTCTTGCACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAGCAATACATTCACCATGAACCCAATCCACAAAACCC ]
[-] EMBL CB674518 [ CCACTCATGCTCTCTTTCTCAGCCAACCACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATAAATTGCCCACAAGCCACAACAGGGTATCACACCCACTTTTGCCGGCACAACACAGAGTCTTGCACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAGCAATACATTCACCATGAACCCAATCCACAAAACCCTCCACCAAATACATGCAACCACAGAACCAAGTTCACTGAGAAGGGCAACGCCAAGATCACACCGAAAGGTGGCAAAGCCAAGTACGATGGGCCATGCGTACCTGGTAGTGTGGCGATGTCGACGTTTTGGCACTGCTCCCTGCCCACCCTCACATCGCCTCCCATGCACAGGCAGCCAGCAAACCTATATAAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCACTCCTCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACGGATAGGCTGCCGCACCATTGATCACCCGAGAACGACTAACTTTAACATCTAACCCTTGACTCACTAACCAGCTAACCTTTTTCTTTCTGTTTCACTGACTCTTCCATTTTCAGTTTCGCTAACCTCTGACTCTCTAACTCTTTCTTTTTGGA]
consensusID : consensus_8124#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence
[TTTCTTTTTTTTTACAGAGCCAAATAAATGTCCAAATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGGTCCATTAATACATATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCCACCTCCCTTCCCTGTCAACCCAGCTCATCTCACAAAAAGTCTGTTTTGCCTCCCTAACCTCAGAGCTACAGCCACCAAGCAACCTTCTCAGCCAAAGTCTGTTTTCCCTCCCCAGCCGAACCAGCTGCCTGCACAGAAGCTGTTCGATGAATTGCCTACAAGCCGCAACAGGGTTTAGCACCAACTATTGCCGGCTCACAACAGGATTTTGCACCAAAATATGCGGCCATTCAATAACATGGGTCCCTTCCACACAGCAAACCATGCACCCATGCTCCCGGTTCACAAAATTCATTCCCAAAATACAAACAACACAATGAGGAAGATCCACAACACCAAGTTCACACCGAAAATGGCAGAGCCAAGTGCAAGGGGCCATGCATACCTGGTACTGTGGCGATGTCAACATTCAGAGCTGCTCCCCGCCTACCCTCACATTGCCTCCCATACACAGGCAGCCAGCAAACCTATATGAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCGCTCCTCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACGGATAGGCCGCCGC]
[+] EMBL CB650067 [TTTCTTTTTTTTTACAGAGCCAAATAAATGTCCAAATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGGTCCATTAATACATATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCCACCTCCCTTCCCTGTCAACCCAGCTCATCTCACAAAAAGTCTGTTTTGCCTCCCTAACCTCAGAGCTACAGCCACCAAGCAACCTTCTCAGCCAAAGTCTGTTTTCCCTCCCCAGCCGAACCAGCTGCCTGCACAGAAGCTGTTCGATGAATTGCCTACAAGCCGCAACAGGGTTTAGCACCAACTATTGCCGGCTCACAACAGGATTTTGCACCAAAATATGCGGCCATTCAATAACATGGGTCCCTTCCACACAGCAAACCATGCACCCATGCTCCCGGTTCACAAAATTCATTCCCAAAATACAAACAACACAATGAGGAAGATCCACAACACCAAGTTCACACCGAAAATGGCAGAGCCAAGTGCAAGGGGCCATGCATACCTGGTACTGTGGCGATGTCAACATTCAGAGCTGCTCCCCGCCTACCCTCACATTGCCTCCCATACACAGGCAGCCAGCAAACCTATATGAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCGCTCCTCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACGGATAGGCCGCCG ]
[-] EMBL AK063227 [ ATAAATGTCCAGATTATACATTCCAAAATATAAATACAGTCCAAATTACAAGTTCCATTAATACATATGTCATTCCAATTCAATCCCTGCAATATGCAAAAGTTCCTATTGCAACCAGGCCACCTCCCTTCCCTGTCAGCCCAGCTCATCTCACAGAAAGTCTGTTTTGCCTCCCTAACCTCAGAGCTACAGCCACCAAGCAACCTTCTCAGCCAAAGTCTGTTTTCCCTCCCCAGCCGAACCAGCTGCCTGCACAGAAGCTGTTCGATGAATTGCCTACAAGCCGCAACAGGGTTTAGCACCAACTATTGCCGGCTCACAACAGGATTTTGCACCAAAATATGCGGCCATTCAATAACATGGGTCCCTTCCACACAGCAAACCATGCACCCATGCTCCCGGTTCACAAAATTCATTCCCAAAATACAAACAACACAATGAGGAAGATCCACAACACCAAGTTCACACCGAAAATGGCAGAGCCAAGTGCAAGGGGCCATGCATACCTGGTACTGTGGCGATGTCGACATTCAGAGCTGCTCCCCGCCTACCCTCACATTGCCTCCCATACACAGGCAGCCAGCAAACCTATATGAACCCCACCAAAGACAGCAGCAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCGCTCCTCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGGGCCTCAGTTGAGCAAGAGGACGGATAGGCCGCCGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8124#0 ---TCTTTTTTTTACAGAGCCAAATAAATGTCCAGATTATACATTCCAAAATATAAATAC 57
consensus_8124#1 TTTCTTTTTTTTTACAGAGCCAAATAAATGTCCAAATTATACATTCCAAAATATAAATAC 60
***************************** *************************
consensus_8124#0 AGTCCAAATTACAAGTTGCATTAATACATAGTATGTCATTCCAATTCAATCCCTGCAATA 117
consensus_8124#1 AGTCCAAATTACAAGGTCCATTAATACATA---TGTCATTCCAATTCAATCCCTGCAATA 117
*************** * ************ ***************************
consensus_8124#0 TGCAAAAGTTCCTATTGCAACCAGGCTACCTCCCTTCCCTGTCAGCCCAGCTCATCTCAC 177
consensus_8124#1 TGCAAAAGTTCCTATTGCAACCAGGCCACCTCCCTTCCCTGTCAACCCAGCTCATCTCAC 177
************************** ***************** ***************
consensus_8124#0 AACAAGTCTGTTTTGCCTCCCTAAGCTCAGAGCTGCAGCCAACCAAGCAACCTCCTCAGC 237
consensus_8124#1 AAAAAGTCTGTTTTGCCTCCCTAACCTCAGAGCTACAGCCA-CCAAGCAACCTTCTCAGC 236
** ********************* ********* ****** *********** ******
consensus_8124#0 CAAAGTCTGTATTCCCTCCCCAGCCGACCTGGCAGCCACTCATGCTCTCTTTCTCAGCCA 297
consensus_8124#1 CAAAGTCTGTTTTCCCTCCCCAGCCGAACCAGCTGCC----------------------- 273
********** **************** * ** ***
consensus_8124#0 ACCACCAGAAGTCTATTTTGCCTCCCTCAGAACAGCAGCATGCACAGAACATGTTCGATA 357
consensus_8124#1 ----------------------------------------TGCACAGAAGCTGTTCGATG 293
********* ********
consensus_8124#0 AATTGCCCACAAGCCACAACAGGGTTTCACACCCACTTTTGCCGGCACAACACAGAGTCT 417
consensus_8124#1 AATTGCCTACAAGCCGCAACAGGGTTTAGCACCAACTATTGCCGGCTCACAACAGGATTT 353
******* ******* *********** **** *** ******** ** **** * *
consensus_8124#0 TGCACCAAACATTCACAGCCATCAAATGCCCTGGAGCCCTCCCCAACAGCAG-CAATACA 476
consensus_8124#1 TGCACCAAA-ATATGCGGCCATTCAATAACATGGGTCCCTTCCACACAGCAAACCATGCA 412
********* ** * ***** *** * *** **** ** ****** * ** **
consensus_8124#0 TTCACCATGAACCCAATCCACAAAACCC-TCCACCAAATACATGCAACCACAGAACCAAG 535
consensus_8124#1 C---CCATGCTCCCGGTTCACAAAATTCATTCCCAAAATACA---AACAACACAATGAGG 466
***** *** * ******* * * * * ******* *** *** ** * *
consensus_8124#0 TTCACTGAGAAGGGCAACGCCAAGATCACACCGAAAGGTGGCAAAGCCAAGTACGATGGG 595
consensus_8124#1 ------AAGATCCACAACACCAAGTTCACACCGAAAA-TGGCAGAGCCAAGTGCAAGGGG 519
*** **** ***** *********** ***** ******** * * ***
consensus_8124#0 CCATGCGTACCTGGTAGTGTGGCGATGTCGACGTTTTGGCACTGCTCCCTGCCCACCCTC 655
consensus_8124#1 CCATGCATACCTGGTACTGTGGCGATGTCAACATTC-AGAGCTGCTCCCCGCCTACCCTC 578
****** ********* ************ ** ** * ******** *** ******
consensus_8124#0 ACATCGCCTCCCATGCACAGGCAGCCAGCAAACCTATATAAACCCCACCAAAGACAGCAG 715
consensus_8124#1 ACATTGCCTCCCATACACAGGCAGCCAGCAAACCTATATGAACCCCACCAAAGACAGCAG 638
**** ********* ************************ ********************
consensus_8124#0 CAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCACTCC 775
consensus_8124#1 CAGCTCGGCTCCTCTCCATTTCTTCTCCACCTCCACGCTCGAGCTCTGCCACTGCGCTCC 698
******************************************************* ****
consensus_8124#0 TCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGG 835
consensus_8124#1 TCAGTCCCGTGCACAAGCTGCCATCCCTCCATTTGCTCCGCCGCGGCCGGCTCCGGCTGG 758
************************************************************
consensus_8124#0 GCCTCAGTTGAGCAAGAGGACGGATAGGCTGCCGCACCATTGATCACCCGAGAACGACTA 895
consensus_8124#1 GCCTCAGTTGAGCAAGAGGACGGATAGGCCGCCGC------------------------- 793
***************************** *****
consensus_8124#0 ACTTTAACATCTAACCCTTGACTCACTAACCAGCTAACCTTTTTCTTTCTGTTTCACTGA 955
consensus_8124#1 ------------------------------------------------------------
consensus_8124#0 CTCTTCCATTTTCAGTTTCGCTAACCTCTGACTCTCTAACTCTTTCTTTTTGGA 1009
consensus_8124#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||