Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 8131 cluster # 8131       Sequences # 5       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8131#0 length = 1046 sequences # 5  
consensusID : consensus_8131#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1046
fasta sequence 
                              [TCTCTTGCTCTCAAGCGGCGTGCAACCATGGCGGCCACGGCCTCCTCCTTCCTCGCCCGCCGCCTCCTCCTCACCCGCCGCGTCCTTTCCTCCCCCCTCCGCCCCTTCTCCACCACTGACTCCTCCTCATCCT-CCTCCTCCTCCTCTTCCTCCGACGACTCCCGTGCGGGATCTGATGCGGGACCCGACCCCGAGCAGCAGCAACCGCCACCAGCGGGCCAGGATCAGCAGGCCGCCGCCCGGCCGCGCGCCGGCGACACCCGTCCCCTCGAGAACGGCCTTGACCCCGGAATCTACAAGGCGATAATGGTGGGGAAGGT-GGGGCAGGAGCCGATACAGAAGCGGCTGAGGAGCGGGAGAACGGTCGTGCTGTTCTCGCTCGGCACCGGCGGCATCCGCAACAACCGCCGCCCGCTGGACCGCGAGGAGCCGCACCAGTACGCTGAACGATGCTCCGTGCAGTGGCACCGCGTCTGCATCTACCCGGAACGGCTCGGCAGCCTCGCGCTCAAGCACGTCAAGACCGGTTCTGTTCTTTATCTGGAAGGGAATCTTGAGACGAAAGTGTTTTCTGATCCTATAACTGGACTGGTTCGGCGCATAAGAGAAATAGCTGTGCGCTCAAATGGCCGTCTCTTGTTTCTTGGGAATGATTGTAATGCGCCCAAGTTAGGTGAAGCCAAGG-G-CGTTGGC-TACTT-CTGAAAC-TGAGGTCCACTCGACATCAAGGTATATCAG-TTGAT-AAAATTGATTTAAATTAGAGGTATCTCAACTGTGCTTAGCTTTAAGCGTT-CAACGTATGGTGAAGATCTCAGTAGTGGACCAGCTTTATGGAACAAATACAGTTGGACATCATTGTCGAAACCCTCTAATAATTGAACAACTGATTGTACTGTATAACTTGATTTTGACAAAACAACATATGTGGCTGTGCTATTTATTTTAGTTCTCCCAAAATTTCTTTTGACCTTTTGGGTCAGAGAAGTTTGTGAATTTGAGCTTTTCTAC-AATAAAATGGATCTGTTTACTCNNNNNNNNNNNNNNNNNNN]

[+] EMBL C72418               [TCTCTTGCTCTCAAGCGGCGTGCAACCATGGCGGCCACGGCCTCCTCCTTCCTCGCCCGCCGCCTCCTCCTCACCCGCCGCGTCCTTTCCTCCCCCCTCCGCCCCTTCTCCACCACTGACTCCTCCTCATCCTATCTCCTCCTCCTCTTCCTCCGACGACTCCCGTGCGGGATCTGATGCGGGACCCGACCCCGAGCAGCAGCNACCGCCACCAGCGGGCCAGGATCAGCAGGCCGCCGCCCGGCCGCGCGCNGGCGANACCCGTTCCCTCGAGAACGGCCTTGACCCCGGAATCTACAAGGCGATAATGGTGGGGAAGGTGGGGGCAGGAGCTGATANAGAAGCAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK073560             [  TCTTGCTCTCAAGCGGCGTGCAACCATGGCGGCCACGGCCTCCTCCTTCCTCGCCCGCCGCCTCCTCCTCACCCGCCGCGTCCTTTCCTCCCCCCTCCGCCCCTTCTCCACCACTGACTCCTCCTCATCCT CCTCCTCCTCCTCTTCCTCCGACGACTCCCGTGCGGGATCTGATGCGGGACCCGACCCCGAGCAGCAGCAACCGCCACCAGCGGGCCAGGATCAGCAGGCCGCCGCCCGGCCGCGCGCCGGCGACACCCGTCCCCTCGAGAACGGCCTTGACCCCGGAATCTACAAGGCGATAATGGTGGGGAAGGT GGGGCAGGAGCCGATACAGAAGCGGCTGAGGAGCGGGAGAACGGTCGTGCTGTTCTCGCTCGGCACCGGCGGCATCCGCAACAACCGCCGCCCGCTGGACCGCGAGGAGCCGCACCAGTACGCTGAACGATGCTCCGTGCAGTGGCACCGCGTCTGCATCTACCCGGAACGGCTCGGCAGCCTCGCGCTCAAGCACGTCAAGACCGGTTCTGTTCTTTATCTGGAAGGGAATCTTGAGACGAAAGTGTTTTCTGATCCTATAACTGGACTGGTTCGGCGCATAAGAGAAATAGCTGTGCGCTCAAATGGCCGTCTCTTGTTTCTTGGGAATGATTGTAATGCGCCCAAGTTAGGTGAAGCCAAGG G CGTTGGC TACTT CTGAAAC TGAGGTCCACTCGACATCAAGGTATATCAG TTGAT AAAATTGATTTAAATTAGAGGTATCTCAACTGTGCTTAGCTTTAAGCGTT CAACGTATGGTGAAGATCTCAGTAGTGGACCAGCTTTATGGAACAAATACAGTTGGACATCATTGTCGAAACCCTCTAATAATTGAACAACTGATTGTACTGTATAACTT                                                                                                                                                   ]
[+] EMBL AK063836             [          TCAAGCGGCGTGCAACCATGGCGGCCACGGCCTCCTCCTTCCTCGCCCGCCGCCTCCTCCTCACCCGCCGCGTCCTTTCCTCCCCCCTCCGCCCCTTCTCCACCACTGACTCCTCCTCATCCT CCTCCTCCTCCTCTTCCTCCGACGACTCCCGTGCGGGATCTGATGCGGGACCCGACCCCGAGCAGCAGCAACCGCCACCAGCGGGCCAGGATCAGCAGGCCGCCGCCCGGCCGCGCGCCGGCGACACCCGTCCCCTCGAGAACGGCCTTGACCCCGGAATCTACAAGGCGATAATGGTGGGGAAGGT GGGGCAGGAGCCGATACAGAAGCGGCTGAGGAGCGGGAGAACGGTCGTGCTGTTCTCGCTCGGCACCGGCGGCATCCGCAACAACCGCCGCCCGCTGGACCGCGAGGAGCCGCACCAGTACGCTGAACGATGCTCCGTGCAGTGGCACCGCGTCTGCATCTACCCGGAACGGCTCGGCAGCCTCGCGCTCAAGCACGTCAAGACCGGTTCTGTTCTTTATCTGGAAGGGAATCTTGAGACGAAAGTGTTTTCTGATCCTATAACTGGACTGGTTCGGCGCATAAGAGAAATAGCTGTGCGCTCAAATGGCCGTCTCTTGTTTCTTGGGAATGATTGTAATGCGCCCAAGTTAGGTGAAGCCAAGG G CGTTGGC TACTT CTGAAAC TGAGGTCCACTCGACATCAAGGTATATCAG TTGAT AAAATTGATTTAAATTAGAGGTATCTCAACTGTGCTTAGCTTTAAGCGTT CAACGTATGGTGAAGATCTCAGTAGTGGACCAGCTTTATGGAACAAATACAGTTGGACATCATTGTCGAAACCCTCTAATAATTGAACAACTGATTGTACTGTATAACTTGATTTTGACAAAACAACATATGTGGCTGTGCTATTTATTTTAGTTCTCCCAAAATTTCTTTTGACCTTTTGGGTCAGAGAAGTTTGTGAATTTGAGCTTTTCTAC AATAAAATGGAT                             ]
[+] EMBL CA755223             [                                                                                                                                                                                                                                                                                                                                                                                                                                                   ACCAGTACGCTGAACGATGCTCCGTGCAGTGGCACCGCGTCTGCATCTACCCGGAACGGCTCGGCAGCCTCGCGCTCAAGCACGTCAAGACCGGTTCTGTTCTTTATCTGGAAGGGAATCTTGAGACGAAAGTGTTTTCTGATCCTATAACTGGACTGGTTCGGCGCATAAGAGAAATAGCTGTGCGCTCAAATGGCCGTCTCTTGTTTCTTGGGAATGATTGTAATGCGCCCAAGTTAGGTGAAGCCAAGG G CGTTGGC TACTT CTGAAAC TGAGGTCCACTCGACATCAAGGTATATCAG TTGAT AAAATTGATTTAAATTAGAGGTATCTCAACTGTGCTTAGCTTTAAGCGTT CAACGTATGGTGAAGATCTCAGTAGTGGACCAGCTTTATGGAACAAATACAGTTGGACATCATTGTCGAAACCCTCTNATAATTGAACAACTGATTGTACTGTATAACTTGATTTTGACAAAACAACATATGTGGCTGTGCTATTTATTTTAGTTCTCCCAAAATTTCTTTTGACCTTTTGNGTCAGAGAAGTTTGTGAATTTGAGCTTTTCTACNNATAAATGGGATCTGTTTACTCNNNNNNNNNNNNNNNNNNN]
[+] EMBL AU101148             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  gtTGAAGCCAAGGNGCCGTTGGCTTACTTCCTGAAACTTGAGGTCCAATCGACATCAAGGTATATCAGTTTGATAAAAATTGATTTAAATTAGAGGTATCTCAACTGTGCTTAGCTTTAAGCGTTNCAACGTATGGTGAAGATCTCAGTAGTGGACCAGCTTTATGGAACAAATACAGTTGGACATCATTGTCGAAACCCTCTAATAATTGAACAACTGATTGTACTGTATAACTTGATTTTGACAAAACAACATATGTGGCTGTGCTATTTATTTTAGTTCTCCCAAAATTTCTTTTGACCTTTTGGGTCAGAGAAGTTTGTGAATTTGAGCTTTTCTAC AATAAAATGGATCTGTTTACTCaaa                ]




>consensus_8131#0
TCTCTTGCTCTCAAGCGGCGTGCAACCATGGCGGCCACGGCCTCCTCCTTCCTCGCCCGC
CGCCTCCTCCTCACCCGCCGCGTCCTTTCCTCCCCCCTCCGCCCCTTCTCCACCACTGAC
TCCTCCTCATCCTCCTCCTCCTCCTCTTCCTCCGACGACTCCCGTGCGGGATCTGATGCG
GGACCCGACCCCGAGCAGCAGCAACCGCCACCAGCGGGCCAGGATCAGCAGGCCGCCGCC
CGGCCGCGCGCCGGCGACACCCGTCCCCTCGAGAACGGCCTTGACCCCGGAATCTACAAG
GCGATAATGGTGGGGAAGGTGGGGCAGGAGCCGATACAGAAGCGGCTGAGGAGCGGGAGA
ACGGTCGTGCTGTTCTCGCTCGGCACCGGCGGCATCCGCAACAACCGCCGCCCGCTGGAC
CGCGAGGAGCCGCACCAGTACGCTGAACGATGCTCCGTGCAGTGGCACCGCGTCTGCATC
TACCCGGAACGGCTCGGCAGCCTCGCGCTCAAGCACGTCAAGACCGGTTCTGTTCTTTAT
CTGGAAGGGAATCTTGAGACGAAAGTGTTTTCTGATCCTATAACTGGACTGGTTCGGCGC
ATAAGAGAAATAGCTGTGCGCTCAAATGGCCGTCTCTTGTTTCTTGGGAATGATTGTAAT
GCGCCCAAGTTAGGTGAAGCCAAGGGCGTTGGCTACTTCTGAAACTGAGGTCCACTCGAC
ATCAAGGTATATCAGTTGATAAAATTGATTTAAATTAGAGGTATCTCAACTGTGCTTAGC
TTTAAGCGTTCAACGTATGGTGAAGATCTCAGTAGTGGACCAGCTTTATGGAACAAATAC
AGTTGGACATCATTGTCGAAACCCTCTAATAATTGAACAACTGATTGTACTGTATAACTT
GATTTTGACAAAACAACATATGTGGCTGTGCTATTTATTTTAGTTCTCCCAAAATTTCTT
TTGACCTTTTGGGTCAGAGAAGTTTGTGAATTTGAGCTTTTCTACAATAAAATGGATCTG
TTTACTCNNNNNNNNNNNNNNNNNNN

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)