cluster # 8132

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Oryza sativa
cluster # 8132 cluster # 8132 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8132#0 length = 776 sequences # 4

consensus_8132#1 length = 438 sequences # 1

consensusID : consensus_8132#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 776
fasta sequence

                              [GATNTGGTTCAACCTGAAGACGGCGCCGTCGATGTCGGACGCGGCGATGGGGAAGCTGAGCCTGGGAGCGAAGGCCCTCAGCGAGGGCGGCTTCGACAAGCTCTACAAGCAGACGTTCGCCGGCGCCGGCGCCGACGAGCGGCTGAGGAAGACGTTCGCCTGCTACCTCTCGACGGCGACGGGCCCCGTCGCCGGCACGCTGTACCTGACCGACCGGAGCGTCGCGTTCTGCAGCGACCGGCCGCTCTCCTTCGCGGCGCCCTCGGGGCAGACGGCGTGGAGCTACTACAAGGTGATGATCCCGGTGGCCAAGGTCGCCGCCGCCGAGCCGGTGACGATGAAGGAGAGCCCGCCGGAGAAGTACGTGCACGTCGTGACGGTGGACTCGCATGACTTCTGGTTCATGGGGTTCGTTAGCTATGACAAGGCCGTGCACCACCTCGTCCAGGCCGTCTCCTCCCAGCAACGTGGC-GGCGCCGCCGCTGACACGGCCGCCGCCGTCCCCGGAGACGGCAAGTGATGATCGGATCGAACGATGAGCTTTGTCTGTTTGGCTTTGTACAGTGTGGCTGTGTTTCATTACTTGTATTTTGATGTGTTTTGAGTATATATGCATGCTTTGGTGTCCTCCTCCTAGTTGTTGGCATGTATGGAGGACATCATTTGTTATACTATATATACTACTAAATATTAGTTTGTCGAGGTCGCTATTGTGTGKATATAATTTGACAAACATTATAGGTTTTTAAAAAAAAAAAAAAAAAAAAACTCGAGAG]

[+] EMBL BP432968             [GATNTGGTTCAACCTGAAGACGGCGCCGTCGATGTCGGACGCGGCGATGGGGAAGCTGAGCCTGGGAGCGAAGGCCCTCAGCGAGGGCGGCTTCGACAAGCTCTACAAGCAGACGTTCGCCGGCGCCGGCGCCGACGAGCGGCTGAGGAAGACGTTCGCCTGCTACCTCTCGACGGCGACGGGCCCCGTCGCCGGCACGCTGTACCTGACCGACCGGAGCGTCGCGTTCTGCAGCGACCGGCCGCTCTCCTTCGCGGCGCCCTCGGGGCAGACGGCGTGGAGCTACTACAAGGTGATGATCCCGGTGGCCAAGGTCSCCSCCGCCGAGCCGGTGACGATGAAGGAGAGCCCGCCGGAGAAGTACGTGCACGTCGTGACGGTGGACTCGCATGACTTCTGGTTCATGGGGTTCGTTAGCTATGACAAGGCCGTGCACCACCTCGTCCAGGCCGTCTCCTCCCAGCAACGTGGCAGGCGCCGCCGCTGACACGGCCGCCGCCGTCCCCGGAGACGGCAAGTGATGATCGGATCGAACGATGAGCTTTGTCTGTTTGGCTTTGTACAGTGTGGCTGTGTTTCATTACTTGTATTTTGATGTGTTTTGAGTATATATGCATGCTTTGGTGTCCTCCTCCTAGTTGTTGGCATGTATGGAGGACATCATTTGTTATACTATATATACTACTAAATATTAGTTTGTCGAGGTCGCTATTGTGTGKATATAATTTGACAAACATTATAGGTTTTTAAAAAAAAAAAAAAAAAAAAACTCGAGAG]
[+] EMBL AK063578             [                                                                                       CGGCTTCGACAAGCTCTACAAGCAGACGTTCGCCGGCGCCGGCGCCGACGAGCGGCTGAGGAAGACGTTCGCCTGCTACCTCTCGACGGCGACGGGCCCCGTCGCCGGCACGCTGTACCTGACCGACCGGAGCGTCGCGTTCTGCAGCGACCGGCCGCTCTCCTTCGCGGCGCCCTCGGGGCAGACGGCGTGGAGCTACTACAAGGTGATGATCCCGGTGGCCAAGGTCGCCGCCGCCGAGCCGGTGACGATGAAGGAGAGCCCGCCGGAGAAGTACGTGCACGTCGTGACGGTGGACTCGCATGACTTCTGGTTCATGGGGTTCGTTAGCTATGACAAGGCCGTGCACCACCTCGTCCAGGCCGTCTCCTCCCAGCAACGTGGC GGCGCCGCCGCTGACACGGCCGCCGCCGTCCCCGGAGACGGCAAGTGATGATCGGATCGAACGATGAGCTTTGTCTGTTTGGCTTTGTACAGTGTGGCTGTGTTTCATTACTTGTATTTTGATGTGTTTTGAGTATATATGCATGCTTTGGTGTCCTCCTCCTAGTTGTTGGCATGTATGGAGGACATCATTTGTTATACTATATATACTACTAAATAT                                                                                     ]
[+] EMBL CF308190             [                                                                                                                                                                                                                                   gagtagaaaACCGGTCGCTCTCCTTCGCGGCGCCCTCGGGGCAGACGGCGTGGAGCTACTACAAGGTGATGATCCCGGTGGCCAAGGTCGCCGCCGCCGAGCCGGTGACGATGAAGGAGAGCCCGCCGGAGAAGTACGTGCACGTCGTGACGGTGGACTCGCATGACTTCTGGTTCATGGGGTTCGTTAGCTATGACAAGGCCGTGCACCACCTCGTCCAGGCCGTCTCCTCCCAGCAACGTGGC GGCGCCGCCGCTGACACGGCCGCCGCCGTCCCCGGAGACGGCAAGTGATGATCGGATCGAACGATGAGCTTTGTCTGTTTGGCTTTGTACAGTGTGGCTGTGTTTCATTACTTGTATTTTGATGTGTTTTGAGTATATATGCATGCTTTGGTGTCCTCCTCCTAGTTGTTGGCATGTATGGAGGACATCATTTGTTATACTATA                                                                                                    ]
[+] EMBL AU071148             [                                                                                                                                                                                                                                                                                                                                                                         TACGTGCACGTCGTGACGGTGGACTCGCATGACTTCTGGTTCATGGGGTTCGTTAGCTATGACAAGGCCGTGCACCACCTCGTCCAGGCCGTCTCCTCCCAGCAACGTGGC GGCGCCGCCGCTGACACGGCCGCCGCCGTCCCCGGAGACGGCAAGTGATGATCGGATCGAACGATGAGCTTTGTCTGTTTGGCTTTGTACAGTGTGGCTGTGTTTCATTACTTGTATTTTGATGTGTTTTGAGTATATATGCATGCTTTGGTGTCCTCCTCCTAGTTGTTGGCATGTATGGAGGACATCATTTGTTATACTATATATACTACTAAAaaaaaa                                                                                  ]




>consensus_8132#0
GATNTGGTTCAACCTGAAGACGGCGCCGTCGATGTCGGACGCGGCGATGGGGAAGCTGAG
CCTGGGAGCGAAGGCCCTCAGCGAGGGCGGCTTCGACAAGCTCTACAAGCAGACGTTCGC
CGGCGCCGGCGCCGACGAGCGGCTGAGGAAGACGTTCGCCTGCTACCTCTCGACGGCGAC
GGGCCCCGTCGCCGGCACGCTGTACCTGACCGACCGGAGCGTCGCGTTCTGCAGCGACCG
GCCGCTCTCCTTCGCGGCGCCCTCGGGGCAGACGGCGTGGAGCTACTACAAGGTGATGAT
CCCGGTGGCCAAGGTCGCCGCCGCCGAGCCGGTGACGATGAAGGAGAGCCCGCCGGAGAA
GTACGTGCACGTCGTGACGGTGGACTCGCATGACTTCTGGTTCATGGGGTTCGTTAGCTA
TGACAAGGCCGTGCACCACCTCGTCCAGGCCGTCTCCTCCCAGCAACGTGGCGGCGCCGC
CGCTGACACGGCCGCCGCCGTCCCCGGAGACGGCAAGTGATGATCGGATCGAACGATGAG
CTTTGTCTGTTTGGCTTTGTACAGTGTGGCTGTGTTTCATTACTTGTATTTTGATGTGTT
TTGAGTATATATGCATGCTTTGGTGTCCTCCTCCTAGTTGTTGGCATGTATGGAGGACAT
CATTTGTTATACTATATATACTACTAAATATTAGTTTGTCGAGGTCGCTATTGTGTGKAT
ATAATTTGACAAACATTATAGGTTTTTAAAAAAAAAAAAAAAAAAAAACTCGAGAG

consensusID : consensus_8132#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [TCTTTCCAATTTCCAAACAATTCCAGCATCATCCATCTCTCTCTCGGTCCCTTCTTCCTCATCGATCTCTCGTAGCTACAGCTACTCACCCAGCCATGGACGGCAAGGACTCCACCACCACCCCCGCCCCTGCCCCGGCTCCGGCTCCGGCTCCGGCGCCGGCGGCAGAGCCTCAGACGACGGGGAACGCGCCGCCGTCCCCGGAGACGGCAAGTGATGATCGGATCGAACGATGAGCTTTGTCTGTTTGGCTTTGTACAGTGTGGCTGTGTTTCATTACTTGTATTTTGATGTGTTTTGAGTATATATGCATGCTTTGGTGTCCTCCTCCTAGTTGTTGGCATGTATGGAGGACATCATTTGTTATACTATATATACTACTAAATATTAGTTTGTCGAGGTCGCTATTGTGTGTATATAATTTGACAAACATTATAG]

[+] EMBL AK070901             [TCTTTCCAATTTCCAAACAATTCCAGCATCATCCATCTCTCTCTCGGTCCCTTCTTCCTCATCGATCTCTCGTAGCTACAGCTACTCACCCAGCCATGGACGGCAAGGACTCCACCACCACCCCCGCCCCTGCCCCGGCTCCGGCTCCGGCTCCGGCGCCGGCGGCAGAGCCTCAGACGACGGGGAACGCGCCGCCGTCCCCGGAGACGGCAAGTGATGATCGGATCGAACGATGAGCTTTGTCTGTTTGGCTTTGTACAGTGTGGCTGTGTTTCATTACTTGTATTTTGATGTGTTTTGAGTATATATGCATGCTTTGGTGTCCTCCTCCTAGTTGTTGGCATGTATGGAGGACATCATTTGTTATACTATATATACTACTAAATATTAGTTTGTCGAGGTCGCTATTGTGTGTATATAATTTGACAAACATTATAG]




>consensus_8132#1
TCTTTCCAATTTCCAAACAATTCCAGCATCATCCATCTCTCTCTCGGTCCCTTCTTCCTC
ATCGATCTCTCGTAGCTACAGCTACTCACCCAGCCATGGACGGCAAGGACTCCACCACCA
CCCCCGCCCCTGCCCCGGCTCCGGCTCCGGCTCCGGCGCCGGCGGCAGAGCCTCAGACGA
CGGGGAACGCGCCGCCGTCCCCGGAGACGGCAAGTGATGATCGGATCGAACGATGAGCTT
TGTCTGTTTGGCTTTGTACAGTGTGGCTGTGTTTCATTACTTGTATTTTGATGTGTTTTG
AGTATATATGCATGCTTTGGTGTCCTCCTCCTAGTTGTTGGCATGTATGGAGGACATCAT
TTGTTATACTATATATACTACTAAATATTAGTTTGTCGAGGTCGCTATTGTGTGTATATA
ATTTGACAAACATTATAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8132#0      GATNTGGTTCAACCTGAAGACGGCGCCGTCGATGTCGGACGCGGCGATGGGGAAGCTGAG 60
consensus_8132#1      ------------------------------------------------------------
                                                                                  

consensus_8132#0      CCTGGGAGCGAAGGCCCTCAGCGAGGGCGGCTTCGACAAGCTCTACAAGCAGACGTTCGC 120
consensus_8132#1      ------------------------------------------------------------
                                                                                  

consensus_8132#0      CGGCGCCGGCGCCGACGAGCGGCTGAGGAAGACGTTCGCCTGCTACCTCTCGACGGCGAC 180
consensus_8132#1      ------------------------------------------------------------
                                                                                  

consensus_8132#0      GGGCCCCGTCGCCGGCACGCTGTACCTGACCGACCGGAGCGTCGCGTTCTGCAGCGACCG 240
consensus_8132#1      ------------------------------------------------------------
                                                                                  

consensus_8132#0      GCCGCTCTCCTTCGCGGCGCCCTCGGGGCAGACGGCGTGGAGCTACTACAAGGTGATGAT 300
consensus_8132#1      --------------------------------------------------------TCTT 4
                                                                              *  *

consensus_8132#0      CCCGGTGGCCAAGGTCGCCGCCGCCGAGCCGGTGACGATGAAGGAGAGCCCGCCGGAGAA 360
consensus_8132#1      TCCAATTTCCAAA-CAATTCCAGCATCATCCATCTCTCTCTCGGTC--CCTTCTTCCTCA 61
                       **  *  ****        * **     *  *  *  *   **    **  *      *

consensus_8132#0      GTACGTGCACGTCGTGACGGTGGACTCGCATGACTTCTGGTTCATGGGGTTCGTTAGCTA 420
consensus_8132#1      TCGATCTCTCGTAGCTACAGCT-ACTCACCCAGCCATGGACGGCAAGGACTC------CA 114
                             * *** *  ** *   **** *    *    *       **  **       *

consensus_8132#0      TGACAAGGCCGTGCACCACCTCGTCCAGGCCGTCTCCTCCCAGCAACGTGGCGGCGCCGC 480
consensus_8132#1      CCACCACCCCCGCCCCTGCCCCGGCTCCGGCTCCGGCTCCGGCGCCGGCGGCAGAGCCTC 174
                        ** *  **   * *  ** ** *   * *  *  ****       * *** * *** *

consensus_8132#0      CGCTGACACGGC---CGCCGCCGTCCCCGGAGACGGCAAGTGATGATCGGATCGAACGAT 537
consensus_8132#1      AGACGACGGGGAACGCGCCGCCGTCCCCGGAGACGGCAAGTGATGATCGGATCGAACGAT 234
                       *  ***  **    *********************************************

consensus_8132#0      GAGCTTTGTCTGTTTGGCTTTGTACAGTGTGGCTGTGTTTCATTACTTGTATTTTGATGT 597
consensus_8132#1      GAGCTTTGTCTGTTTGGCTTTGTACAGTGTGGCTGTGTTTCATTACTTGTATTTTGATGT 294
                      ************************************************************

consensus_8132#0      GTTTTGAGTATATATGCATGCTTTGGTGTCCTCCTCCTAGTTGTTGGCATGTATGGAGGA 657
consensus_8132#1      GTTTTGAGTATATATGCATGCTTTGGTGTCCTCCTCCTAGTTGTTGGCATGTATGGAGGA 354
                      ************************************************************

consensus_8132#0      CATCATTTGTTATACTATATATACTACTAAATATTAGTTTGTCGAGGTCGCTATTGTGTG 717
consensus_8132#1      CATCATTTGTTATACTATATATACTACTAAATATTAGTTTGTCGAGGTCGCTATTGTGTG 414
                      ************************************************************

consensus_8132#0      KATATAATTTGACAAACATTATAGGTTTTTAAAAAAAAAAAAAAAAAAAAACTCGAGAG 776
consensus_8132#1      TATATAATTTGACAAACATTATAG----------------------------------- 438
                       ***********************