These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8135#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 956 fasta sequence [CACTGACATGGATGAAGGAGTAGAAAGAGGACAGATACCCATTCAGCTGCCAGCAGACCCCTCTTCTTCCTCCTCACCCCCTCTCCACTGCCTCCTTCCCCCAGATTCACCACCATTAATCCCCCAAATCAACCACCATGGATTCTCTCCACTAGAATCTCCGGTCACCCTCCCACCCTATCTCCGGCATCATCGTGCCCTCCACCGCGCCCACTAACTATCTCCCCTGCCTCTCTATCCAGATCTCTCAGTCCAGATCCAAAGTTGCAGCCTCCACCAGCTCCGGCAACTCCAGCAACCAAATCCCTGTTCGAGGTTGAAGCTACTGCATCAAAATCCCCAATTACTTCATTATTAGGTGGATGCACCCTAGATCTACTGTAGATGCTTTTTGTTTCAAGAGAACAGGATGCTGCCTGCTTATACGAGACATGCATAGGGATTAGTGGATGACACCAGCAAAGGATGGGTGAAAGGCTAAGGAATACTAATGTGAGGTACACCTTAAATTACAGGATTAGAAAGGGTTCAGCCAAAGTATCGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACAATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGTATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCTAAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATATGGAATTTGGTA] [+] EMBL CF318752 [CACTGACATGGATGAAGGAGTAGAAAGAGGACAGATACCCATTCAGCTGCCAGCAGACCCCTCTTCTTCCTCCTCACCCCCTCTCCACTGCCTCCTTCCCCCAGATTCACCACCATTAATCCCCCAAATCAACCACCATGGATTCTCTCCACTAGAATCTCCGGTCACCCTCCCACCCTATCTCCGGCATCATCGTGCCCTCCACCGCGCCCACTAACTATCTCCCCTGCCTCTCTATCCAGATCTCTCAGTCCAGATCCAAAGTTGCAGCCTCCACCAGCTCCGGCAACTCCAGCAACCAAATCCCTGTTCGAGGTTGAAGCTACTGCATC ] [+] EMBL AK111858 [ CCATTCAGCTGCCAGCAGACCCCTCTTCTTCCTCCTCACCCCCTCTCCACTGCCTCCTTCCCCCAGATTCACCACCATTAATCCCCCAAATCAACCACCATGGATTCTCTCCACTAGAATCTCCGGTCACCCTCCCACCCTATCTCCGGCATCATCGTGCCCTCCACCGCGCCCACTAACTATCTCCCCTGCCTCTCTATCCAGATCTCTCAGTCCAGATCCAAAGTTGCAGCCTCCACCAGCTCCGGCAACTCCAGCAACCAAATCCCTGTTCGAGGTTGAAGCTACTGCATCAAAATCCCCAATTACTTCATTATTAGGTGGATGCACCCTAGATCTACTGTAGATGCTTTTTGTTTCAAGAGAACAGGATGCTGCCTGCTTATACGAGACATGCATAGGGATTAGTGGATGACACCAGCAAAGGATGGGTGAAAGGCTAAGGAATACTAATGTGAGGTACACCTTAAATTACAGGATTAGAAAGGGTTCAGCCAAAGTATCGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACAATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGTATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCTAAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATATGGAATTTGGTA] consensusID : consensus_8135#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 549 fasta sequence [CTGCTTATACGAGACATGCATAGGGATTAGTGGATGACACCAGCAAAGGATGGGTGAAAGGCTAAGGAATACTAATGTGAGGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACAATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGTATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCTAAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATATGGAATTTGAGCTGTTTATATGTTATCTGTGATGAATATCATAATGACCATTTTTGCTAAAAAAAA] [-] EMBL CF318753 [CTGCTTATACGAGACATGCATAGGGATTAGTGGATGACACCAGCAAAGGATGGGTGAAAGGCTAAGGAATACTAATGTGAGGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACAATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGTATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCTAAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATATGGAATTTGAGCTGTTTATATGTTATCTGTGATGAATATCATAATGACCATTTTTGCTAAAAAAAA] [-] EMBL D42468 [ TGTGGAGTTGCGGGATACTAATGCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGAT GAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATNAAATATGGAATTTGAGCT ] consensusID : consensus_8135#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [TAAACTTTTCAAACTGCTACAGGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACAATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGTATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCTAAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATA] [+] EMBL AK111950 [TAAACTTTTCAAACTGCTACAGGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACAATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGTATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCTAAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8135#1 ------------------------------------------------------------ consensus_8135#2 ------------------------------------------------------------ consensus_8135#0 CACTGACATGGATGAAGGAGTAGAAAGAGGACAGATACCCATTCAGCTGCCAGCAGACCC 60 consensus_8135#1 ------------------------------------------------------------ consensus_8135#2 ------------------------------------------------------------ consensus_8135#0 CTCTTCTTCCTCCTCACCCCCTCTCCACTGCCTCCTTCCCCCAGATTCACCACCATTAAT 120 consensus_8135#1 ------------------------------------------------------------ consensus_8135#2 ------------------------------------------------------------ consensus_8135#0 CCCCCAAATCAACCACCATGGATTCTCTCCACTAGAATCTCCGGTCACCCTCCCACCCTA 180 consensus_8135#1 ------------------------------------------------------------ consensus_8135#2 ------------------------------------------------------------ consensus_8135#0 TCTCCGGCATCATCGTGCCCTCCACCGCGCCCACTAACTATCTCCCCTGCCTCTCTATCC 240 consensus_8135#1 ------------------------------------------------------------ consensus_8135#2 ------------------------------------------------------------ consensus_8135#0 AGATCTCTCAGTCCAGATCCAAAGTTGCAGCCTCCACCAGCTCCGGCAACTCCAGCAACC 300 consensus_8135#1 ------------------------------------------------------------ consensus_8135#2 ------------------------------------------------------------ consensus_8135#0 AAATCCCTGTTCGAGGTTGAAGCTACTGCATCAAAATCCCCAATTACTTCATTATTAGGT 360 consensus_8135#1 --------------------------------------------------------CTGC 4 consensus_8135#2 ------------------------------------------------------------ consensus_8135#0 GGATGCACCCTAGATCTACTGTAGATGCTTTTTGTTTCAAGAGAACAGGATGCTGCCTGC 420 consensus_8135#1 TTATACGAGACATGCATAGGGATTAGTGGATGACACCAGCAAAGGATGGGTGAAAGGCTA 64 consensus_8135#2 ---------------------------------------------------TAAACTTTT 9 consensus_8135#0 TTATACGAGACATGCATAGGGATTAGTGGATGACACCAGCAAAGGATGGGTGAAAGGCTA 480 *** * consensus_8135#1 AGGAATACTAATGTGAGG------------------------------------------ 82 consensus_8135#2 CAAACTGCTAC----AGG------------------------------------------ 23 consensus_8135#0 AGGAATACTAATGTGAGGTACACCTTAAATTACAGGATTAGAAAGGGTTCAGCCAAAGTA 540 * * *** *** consensus_8135#1 ---GAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACA 139 consensus_8135#2 ---GAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACA 80 consensus_8135#0 TCGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACA 600 ********************************************************* consensus_8135#1 ATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGT 199 consensus_8135#2 ATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGT 140 consensus_8135#0 ATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGT 660 ************************************************************ consensus_8135#1 ATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCT 259 consensus_8135#2 ATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCT 200 consensus_8135#0 ATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCT 720 ************************************************************ consensus_8135#1 AAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCT 319 consensus_8135#2 AAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCT 260 consensus_8135#0 AAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCT 780 ************************************************************ consensus_8135#1 ATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTC 379 consensus_8135#2 ATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTC 320 consensus_8135#0 ATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTC 840 ************************************************************ consensus_8135#1 TTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAA 439 consensus_8135#2 TTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAA 380 consensus_8135#0 TTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAA 900 ************************************************************ consensus_8135#1 CTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATATGGAATTTGAGCTGTT 499 consensus_8135#2 CTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATA---------------- 424 consensus_8135#0 CTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATATGGAATTTGGTA---- 956 ******************************************** consensus_8135#1 TATATGTTATCTGTGATGAATATCATAATGACCATTTTTGCTAAAAAAAA 549 consensus_8135#2 -------------------------------------------------- consensus_8135#0 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||