cluster # 8135

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Oryza sativa
cluster # 8135 cluster # 8135 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8135#0 length = 956 sequences # 2

consensus_8135#1 length = 549 sequences # 2
consensus_8135#2 length = 424 sequences # 1

consensusID : consensus_8135#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 956
fasta sequence

                              [CACTGACATGGATGAAGGAGTAGAAAGAGGACAGATACCCATTCAGCTGCCAGCAGACCCCTCTTCTTCCTCCTCACCCCCTCTCCACTGCCTCCTTCCCCCAGATTCACCACCATTAATCCCCCAAATCAACCACCATGGATTCTCTCCACTAGAATCTCCGGTCACCCTCCCACCCTATCTCCGGCATCATCGTGCCCTCCACCGCGCCCACTAACTATCTCCCCTGCCTCTCTATCCAGATCTCTCAGTCCAGATCCAAAGTTGCAGCCTCCACCAGCTCCGGCAACTCCAGCAACCAAATCCCTGTTCGAGGTTGAAGCTACTGCATCAAAATCCCCAATTACTTCATTATTAGGTGGATGCACCCTAGATCTACTGTAGATGCTTTTTGTTTCAAGAGAACAGGATGCTGCCTGCTTATACGAGACATGCATAGGGATTAGTGGATGACACCAGCAAAGGATGGGTGAAAGGCTAAGGAATACTAATGTGAGGTACACCTTAAATTACAGGATTAGAAAGGGTTCAGCCAAAGTATCGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACAATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGTATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCTAAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATATGGAATTTGGTA]

[+] EMBL CF318752             [CACTGACATGGATGAAGGAGTAGAAAGAGGACAGATACCCATTCAGCTGCCAGCAGACCCCTCTTCTTCCTCCTCACCCCCTCTCCACTGCCTCCTTCCCCCAGATTCACCACCATTAATCCCCCAAATCAACCACCATGGATTCTCTCCACTAGAATCTCCGGTCACCCTCCCACCCTATCTCCGGCATCATCGTGCCCTCCACCGCGCCCACTAACTATCTCCCCTGCCTCTCTATCCAGATCTCTCAGTCCAGATCCAAAGTTGCAGCCTCCACCAGCTCCGGCAACTCCAGCAACCAAATCCCTGTTCGAGGTTGAAGCTACTGCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK111858             [                                      CCATTCAGCTGCCAGCAGACCCCTCTTCTTCCTCCTCACCCCCTCTCCACTGCCTCCTTCCCCCAGATTCACCACCATTAATCCCCCAAATCAACCACCATGGATTCTCTCCACTAGAATCTCCGGTCACCCTCCCACCCTATCTCCGGCATCATCGTGCCCTCCACCGCGCCCACTAACTATCTCCCCTGCCTCTCTATCCAGATCTCTCAGTCCAGATCCAAAGTTGCAGCCTCCACCAGCTCCGGCAACTCCAGCAACCAAATCCCTGTTCGAGGTTGAAGCTACTGCATCAAAATCCCCAATTACTTCATTATTAGGTGGATGCACCCTAGATCTACTGTAGATGCTTTTTGTTTCAAGAGAACAGGATGCTGCCTGCTTATACGAGACATGCATAGGGATTAGTGGATGACACCAGCAAAGGATGGGTGAAAGGCTAAGGAATACTAATGTGAGGTACACCTTAAATTACAGGATTAGAAAGGGTTCAGCCAAAGTATCGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACAATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGTATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCTAAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATATGGAATTTGGTA]




>consensus_8135#0
CACTGACATGGATGAAGGAGTAGAAAGAGGACAGATACCCATTCAGCTGCCAGCAGACCC
CTCTTCTTCCTCCTCACCCCCTCTCCACTGCCTCCTTCCCCCAGATTCACCACCATTAAT
CCCCCAAATCAACCACCATGGATTCTCTCCACTAGAATCTCCGGTCACCCTCCCACCCTA
TCTCCGGCATCATCGTGCCCTCCACCGCGCCCACTAACTATCTCCCCTGCCTCTCTATCC
AGATCTCTCAGTCCAGATCCAAAGTTGCAGCCTCCACCAGCTCCGGCAACTCCAGCAACC
AAATCCCTGTTCGAGGTTGAAGCTACTGCATCAAAATCCCCAATTACTTCATTATTAGGT
GGATGCACCCTAGATCTACTGTAGATGCTTTTTGTTTCAAGAGAACAGGATGCTGCCTGC
TTATACGAGACATGCATAGGGATTAGTGGATGACACCAGCAAAGGATGGGTGAAAGGCTA
AGGAATACTAATGTGAGGTACACCTTAAATTACAGGATTAGAAAGGGTTCAGCCAAAGTA
TCGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACA
ATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGT
ATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCT
AAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCT
ATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTC
TTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAA
CTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATATGGAATTTGGTA

consensusID : consensus_8135#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 549
fasta sequence

                              [CTGCTTATACGAGACATGCATAGGGATTAGTGGATGACACCAGCAAAGGATGGGTGAAAGGCTAAGGAATACTAATGTGAGGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACAATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGTATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCTAAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATATGGAATTTGAGCTGTTTATATGTTATCTGTGATGAATATCATAATGACCATTTTTGCTAAAAAAAA]

[-] EMBL CF318753             [CTGCTTATACGAGACATGCATAGGGATTAGTGGATGACACCAGCAAAGGATGGGTGAAAGGCTAAGGAATACTAATGTGAGGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACAATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGTATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCTAAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATATGGAATTTGAGCTGTTTATATGTTATCTGTGATGAATATCATAATGACCATTTTTGCTAAAAAAAA]
[-] EMBL D42468               [                                                                                                                                                                                                                                                                                      TGTGGAGTTGCGGGATACTAATGCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGAT GAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATNAAATATGGAATTTGAGCT                                                     ]




>consensus_8135#1
CTGCTTATACGAGACATGCATAGGGATTAGTGGATGACACCAGCAAAGGATGGGTGAAAG
GCTAAGGAATACTAATGTGAGGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGAC
TGCAATGGCTACCACAACAATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAAC
AACATCGACCAACAATTGTATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCAC
ATGTCATGCAAGATGGGCTAAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAAT
GCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAA
GTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATG
TTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAA
ATATGGAATTTGAGCTGTTTATATGTTATCTGTGATGAATATCATAATGACCATTTTTGC
TAAAAAAAA

consensusID : consensus_8135#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence

                              [TAAACTTTTCAAACTGCTACAGGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACAATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGTATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCTAAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATA]

[+] EMBL AK111950             [TAAACTTTTCAAACTGCTACAGGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACAATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGTATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCTAAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATA]




>consensus_8135#2
TAAACTTTTCAAACTGCTACAGGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGA
CTGCAATGGCTACCACAACAATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAA
CAACATCGACCAACAATTGTATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCA
CATGTCATGCAAGATGGGCTAAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAA
TGCTTTTGGATATTTTGTCTATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAA
AGTACGTGCTATTAGGTGTCTTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTAT
GTTGAAATAGTGAACTAGAACTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGA
AATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8135#1      ------------------------------------------------------------
consensus_8135#2      ------------------------------------------------------------
consensus_8135#0      CACTGACATGGATGAAGGAGTAGAAAGAGGACAGATACCCATTCAGCTGCCAGCAGACCC 60
                                                                                  

consensus_8135#1      ------------------------------------------------------------
consensus_8135#2      ------------------------------------------------------------
consensus_8135#0      CTCTTCTTCCTCCTCACCCCCTCTCCACTGCCTCCTTCCCCCAGATTCACCACCATTAAT 120
                                                                                  

consensus_8135#1      ------------------------------------------------------------
consensus_8135#2      ------------------------------------------------------------
consensus_8135#0      CCCCCAAATCAACCACCATGGATTCTCTCCACTAGAATCTCCGGTCACCCTCCCACCCTA 180
                                                                                  

consensus_8135#1      ------------------------------------------------------------
consensus_8135#2      ------------------------------------------------------------
consensus_8135#0      TCTCCGGCATCATCGTGCCCTCCACCGCGCCCACTAACTATCTCCCCTGCCTCTCTATCC 240
                                                                                  

consensus_8135#1      ------------------------------------------------------------
consensus_8135#2      ------------------------------------------------------------
consensus_8135#0      AGATCTCTCAGTCCAGATCCAAAGTTGCAGCCTCCACCAGCTCCGGCAACTCCAGCAACC 300
                                                                                  

consensus_8135#1      ------------------------------------------------------------
consensus_8135#2      ------------------------------------------------------------
consensus_8135#0      AAATCCCTGTTCGAGGTTGAAGCTACTGCATCAAAATCCCCAATTACTTCATTATTAGGT 360
                                                                                  

consensus_8135#1      --------------------------------------------------------CTGC 4
consensus_8135#2      ------------------------------------------------------------
consensus_8135#0      GGATGCACCCTAGATCTACTGTAGATGCTTTTTGTTTCAAGAGAACAGGATGCTGCCTGC 420
                                                                                  

consensus_8135#1      TTATACGAGACATGCATAGGGATTAGTGGATGACACCAGCAAAGGATGGGTGAAAGGCTA 64
consensus_8135#2      ---------------------------------------------------TAAACTTTT 9
consensus_8135#0      TTATACGAGACATGCATAGGGATTAGTGGATGACACCAGCAAAGGATGGGTGAAAGGCTA 480
                                                                          ***   * 

consensus_8135#1      AGGAATACTAATGTGAGG------------------------------------------ 82
consensus_8135#2      CAAACTGCTAC----AGG------------------------------------------ 23
consensus_8135#0      AGGAATACTAATGTGAGGTACACCTTAAATTACAGGATTAGAAAGGGTTCAGCCAAAGTA 540
                         * * ***     ***                                          

consensus_8135#1      ---GAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACA 139
consensus_8135#2      ---GAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACA 80
consensus_8135#0      TCGGAACTGATTCCTCCCATTTAGGCTCACAGCAAGTTGACTGCAATGGCTACCACAACA 600
                         *********************************************************

consensus_8135#1      ATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGT 199
consensus_8135#2      ATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGT 140
consensus_8135#0      ATGATGGATGTGATATTGCTTCAAGCAATGGTGGCAGTAACAACATCGACCAACAATTGT 660
                      ************************************************************

consensus_8135#1      ATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCT 259
consensus_8135#2      ATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCT 200
consensus_8135#0      ATCGGTTGTTTGAATGCTTCTCCTTGATGCTGCTACAGCACATGTCATGCAAGATGGGCT 720
                      ************************************************************

consensus_8135#1      AAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCT 319
consensus_8135#2      AAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCT 260
consensus_8135#0      AAGGTTTTTGATATACCAATGTGGAGTTGCGGCATACTAATGCTTTTGGATATTTTGTCT 780
                      ************************************************************

consensus_8135#1      ATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTC 379
consensus_8135#2      ATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTC 320
consensus_8135#0      ATATGGTTCTAACCATATAGATGGAGTGTGAGACTTTGAAAGTACGTGCTATTAGGTGTC 840
                      ************************************************************

consensus_8135#1      TTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAA 439
consensus_8135#2      TTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAA 380
consensus_8135#0      TTAGGCCATGCAAACTCTAGTTGTTCAACTTGTGTGTTATGTTGAAATAGTGAACTAGAA 900
                      ************************************************************

consensus_8135#1      CTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATATGGAATTTGAGCTGTT 499
consensus_8135#2      CTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATA---------------- 424
consensus_8135#0      CTATTCTATGATGGACTTGATCTTTCTATTTTCTGAATGAAATATGGAATTTGGTA---- 956
                      ********************************************                

consensus_8135#1      TATATGTTATCTGTGATGAATATCATAATGACCATTTTTGCTAAAAAAAA 549
consensus_8135#2      --------------------------------------------------
consensus_8135#0      --------------------------------------------------