These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 902 fasta sequence [GAACAAGTTTAGTGCAATGTGTCACTAGCTAGCTAGGTCATATTGTTGGATAGTGGCTAGCTTAGCTAGGTCGTGTGTGTTGTGAACTTGTGCTGTCTCGCTAATGTTGTTGGCGTAGTGAGTGCAGTGATCGGAGGTGGTGTTGGTGGAGGCGGCGAGGATGAGCAGGAACAACGGCAAGANTTCCAAGCTGGAGTGCCTGA-GNTGATGAGCCTGTCGAGGGCGCGTGGCGGCGGCGGCGGCGGGCCGTCGGCGACTGTGCGCCCGGGCGGCGACAGCGGC-GGCGTCAACGGCGCGAACACGTCGCC-GCGC-AGGCTGTCGTCCTCGTCGTCGT-CCACCGCGTCGCCGCCGAGCTCGTGCGTGTCGTCGGAGGGCAGCCCGGACGCGGCGGGCGGCGGCGCGGGGCCGCCCATGGTGCTGGCTGGGTGCCCCCGGTGCATGATGTACGTGATGCTGTCCCGGGAGGATCCCCGGTGCCCCCGGTGCCACAGCGCCGTGCTGCTCGACTTCAACGACGACGACCAGCGCCGCCCGCGCCAACGCCGGTGATCCGATCGGCGAGGCTAGCTAGCTGGTGCAACAGCCGGGGGCTCAGTTCTTGCGTTTAGTTCTTCTTCGTCGTCACCGTCGCCGTCGTAGCTTTAATTTAATTACCATCATTCATGATCGATCAGAGTTTACGTGGATCCCGAAAGGAATTATTTCATAGACCTGTTTCTTGCGTGCGGTGCACCCTGTCAAACGGAATTGGTCTAGGTAATAATTTCGCGTTTCAGTAGTATTTCCTGTTCTAGTGTTCAGCTGAGAGCTACGTGCAACAGTGCAAAGACTTTAAGTTTATCATGTCATCAACATTTAAATCATTTAATGGAAGTAATGCTCTTGTCCTGTCAAAAAAAAAA] [+] EMBL OS1321865 [GAACAAGTTTAGTGCAATGTGTCACTAGCTAGCTAGGTCATATTGTTGGATAGTGGCTAGCTTAGCTAGGTCGTGTGTGTTGTGAACTTGTGCTGTCTCGCTAATGTTGTTGGCGTAGTGAGTGCAGTGATCGGAGGTGGTGTTGGTGGAGGCGGCGAGGATGAGCAGGAACAACGGCAAGANTTCCAAGCTGGAGTGCCTGA GNTGATGAGCCT ] [+] EMBL AK111023 [ AGTGATCGGAGGTGGTGTTGGTGGAGGCGGCGAGGATGAGCAGGAACAACGGCAAGAGTTCCAAGCTGGAGTGCCTGAGGCTGATGAGCCTGTCGAGGGCGCGTGGCGGCGGCGGCGGCGGGCCGTCGGCGACTGTGCGCCCGGGCGGCGACAGCGGC GGCGTCAACGGCGCGAACACGTCGCC GCGC AGGCTGTCGTCCTCGTCGTCGT CCACCGCGTCGCCGCCGAGCTCGTGCGTGTCGTCGGAGGGCAGCCCGGACGCGGCGGGCGGCGGCGCGGGGCCGCCCATGGTGCTGGCTGGGTGCCCCCGGTGCATGATGTACGTGATGCTGTCCCGGGAGGATCCCCGGTGCCCCCGGTGCCACAGCGCCGTGCTGCTCGACTTCAACGACGACGACCAGCGCCGCCCGCGCCAACGCCGGTGATCCGATCGGCGAGGCTAGCTAGCTGGTGCAACAGCCGGGGGCTCAGTTCTTGCGTTTAGTTCTTCTTCGTCGTCACCGTCGCCGTCGTAGCTTTAATTTAATTACCATCATTCATGATCGATCAGAGTTTACGTGGATCCCGAAAGGAATTATTTCATAGACCTGTTTCTTGCGTGCGGTGCACCCTGTCAAACGGAATTGGTCTAGGTAATAATTTCGCGTTTCAGTAGTATTTCCTGTTCTAGTGTTCAGCTGAGAGCTACGTGCAACAGTGCAAAGACTTTAAGTTTATCATGTCATCAACATTTAAATCATTTAATGGAAGTAATGCTC ] [+] EMBL AU082992 [ gGCCCGGACGGCGACAGCGACGGGCGTCAACGGCGCGAACACGTCGCCGGCGCAAGGCTGTCGTCCTNGTCGTCGTCCCACCGCGTCGCCGCCGAGCTCGTGCGTGTCGTCGGAGGGCAGCCCGGACGCGGCGGGCGACGGCGCGGGGCCGCCCATGGTGCTGGCTGGGTGCCCCCGGTGCATGATGTACGTGATGCTGTCCCGGGAGGATCCCCGGTGCCCCCGGTGCCACAGCGCCGTGCTGCTCGACTTCAACGACGACGACCAGCGCCGCCCGCGCCAACGCCGGTGATCCGATCGGCGAGGCTAGCTAGCTGGTGCAACAGCCGGGGGCTCAGTTCTTGCGTTTAGTTCTTCTTCGTCGTCACCGTCGCCGTCGTAGCTTTAATTTAATTACCATCATTCATGATCGATCAGAGTTTACGTGGATCCCGAAAGGAATTATTTCATAGACCTGTTTCTTGCGTGCGGTGCACCCTGTCAAACGGAATTGGTCTAGGTAATAATTTCGCGTTTCAGTAGTATTTCCTGTTCTAGTGTTCAGCTGAGAGCTACGTGCAACAGTGCAAAGACTTTAAGTTTATCATGTCATCAACATTT AATCATTTAATGGAAGTAATGCTCTTGTCCTGTCAAAAAAAAAA] [+] EMBL AU174397 [ AGGATCCCCGGTGCCCCCGGTGCCACAGCGCCGTGCTGCTCGACTTCAACGACGACGACCAGCGCCGCCCGCGCCAACGCCGGTGATCCGATCGGCGAGGCTAGCTAGCTGGTGCAACAGCCGGGGGCTCAGTTCTTGCGTTTAGTTNTTNTTCGTCGTCACCGTCGCCGTCGTAGCTTTAATTTAATTACCATCATTCATGATCGATCAGAGTTTACGTGGATCCCGAAAGGAATTATTTCATAGACCTGTTTNTTGCGTGCGGTGCACCCTGTCAAACGGAATTGGTCTAGGTAATAATTTCGCGTTTCAGTAGTATTTCCTGTTCTAGTGTTCAGCTGAGAGCTACGTGCAACAGTGCAAAGACTTTAAGTTTATCATGTCATCAACATTTAAATCATTTAATGGAAGTAATGCTCTTGTCCTGTCAAAAA ] consensusID : consensus_8139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [ACCAACACGTCGAACTGCTCCCTATATTAGAATCCGAGTGATCGGAGGTGGTGTTGGTGGAGGCGGCGAGGATGAGCAGGAACAACGGCAAGAGTTCCAAGCTGGAGTGCCTGAGGCTGATGAGCCTGTCGAGGGCGCGTNGCGGCGGCGGCGGCGGGCCGTCGGCGACTGTNCGCCCGGGCGGCGACACGGCGGCGTCAACGGCGCGAACACGTNGCCGCGCAGGCTGTCGTCCTCGTCGTCGTCCACNGCGTCGCCGCCGAGCTCGTGCGTTTNGTCGGAGGGCAGCNCGGACGCGGCGGGCNGCGGCGCGGGGNCNCCAATGGTGCTGGCTTGGTGCCCCGGTGCATGATGTACGTAATGCTGTT] [+] EMBL C74200 [ACCAACACGTCGAACTGCTCCCTATATTAGAATCCGAGTGATCGGAGGTGGTGTTGGTGGAGGCGGCGAGGATGAGCAGGAACAACGGCAAGAGTTCCAAGCTGGAGTGCCTGAGGCTGATGAGCCTGTCGAGGGCGCGTNGCGGCGGCGGCGGCGGGCCGTCGGCGACTGTNCGCCCGGGCGGCGACACGGCGGCGTCAACGGCGCGAACACGTNGCCGCGCAGGCTGTCGTCCTCGTCGTCGTCCACNGCGTCGCCGCCGAGCTCGTGCGTTTNGTCGGAGGGCAGCNCGGACGCGGCGGGCNGCGGCGCGGGGNCNCCAATGGTGCTGGCTTGGTGCCCCGGTGCATGATGTACGTAATGCTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8139#0 GAACAAGTTTAGTGCAATGTGTCACTAGCTAGCTAGGTCATATTGTTGGATAGTGGCTAG 60 consensus_8139#1 ------------------------------------------------------------ consensus_8139#0 CTTAGCTAGGTCGTGTGTGTTGTGAACTTGTGCTGTCTCGCTAA--TGTTGTTGGCGTAG 118 consensus_8139#1 -------------------------------ACCAACACGTCGAACTGCTCCCTATATTA 29 * * ** * ** * * consensus_8139#0 TGAGTGCAGTGATCGGAGGTGGTGTTGGTGGAGGCGGCGAGGATGAGCAGGAACAACGGC 178 consensus_8139#1 GAATCCGAGTGATCGGAGGTGGTGTTGGTGGAGGCGGCGAGGATGAGCAGGAACAACGGC 89 * ***************************************************** consensus_8139#0 AAGANTTCCAAGCTGGAGTGCCTGAGN-TGATGAGCCTGTCGAGGGCGCGTGGCGGCGGC 237 consensus_8139#1 AAGAGTTCCAAGCTGGAGTGCCTGAGGCTGATGAGCCTGTCGAGGGCGCGTNGCGGCGGC 149 **** ********************* *********************** ******** consensus_8139#0 GGCGGCGGGCCGTCGGCGACTGTGCGCCCGGGCGGCGACAGCGGCGGCGTCAACGGCGCG 297 consensus_8139#1 GGCGGCGGGCCGTCGGCGACTGTNCGCCCGGGCGGCGACA-CGGCGGCGTCAACGGCGCG 208 *********************** **************** ******************* consensus_8139#0 AACACGTCGCCGCGCAGGCTGTCGTCCTCGTCGTCGTCCACCGCGTCGCCGCCGAGCTCG 357 consensus_8139#1 AACACGTNGCCGCGCAGGCTGTCGTCCTCGTCGTCGTCCACNGCGTCGCCGCCGAGCTCG 268 ******* ********************************* ****************** consensus_8139#0 TGCGTGTCGTCGGAGGGCAGCCCGGACGCGGCGGGCGGCGGCGCGGGGCCGCCCATGGTG 417 consensus_8139#1 TGCGTTTNGTCGGAGGGCAGCNCGGACGCGGCGGGCNGCGGCGCGGGGNCNCCAATGGTG 328 ***** * ************* ************** *********** * ** ****** consensus_8139#0 CTGGCTGGGTGCCCCCGGTGCATGATGTACGTGATGCTGTCCCGGGAGGATCCCCGGTGC 477 consensus_8139#1 CTGGCTTGGTGCCCC-GGTGCATGATGTACGTAATGCTGTT------------------- 368 ****** ******** **************** ******* consensus_8139#0 CCCCGGTGCCACAGCGCCGTGCTGCTCGACTTCAACGACGACGACCAGCGCCGCCCGCGC 537 consensus_8139#1 ------------------------------------------------------------ consensus_8139#0 CAACGCCGGTGATCCGATCGGCGAGGCTAGCTAGCTGGTGCAACAGCCGGGGGCTCAGTT 597 consensus_8139#1 ------------------------------------------------------------ consensus_8139#0 CTTGCGTTTAGTTCTTCTTCGTCGTCACCGTCGCCGTCGTAGCTTTAATTTAATTACCAT 657 consensus_8139#1 ------------------------------------------------------------ consensus_8139#0 CATTCATGATCGATCAGAGTTTACGTGGATCCCGAAAGGAATTATTTCATAGACCTGTTT 717 consensus_8139#1 ------------------------------------------------------------ consensus_8139#0 CTTGCGTGCGGTGCACCCTGTCAAACGGAATTGGTCTAGGTAATAATTTCGCGTTTCAGT 777 consensus_8139#1 ------------------------------------------------------------ consensus_8139#0 AGTATTTCCTGTTCTAGTGTTCAGCTGAGAGCTACGTGCAACAGTGCAAAGACTTTAAGT 837 consensus_8139#1 ------------------------------------------------------------ consensus_8139#0 TTATCATGTCATCAACATTTAAATCATTTAATGGAAGTAATGCTCTTGTCCTGTCAAAAA 897 consensus_8139#1 ------------------------------------------------------------ consensus_8139#0 AAAAA 902 consensus_8139#1 ----- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||