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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1345 fasta sequence
[TCTCGCTCTCAACTCGCATCGATTTAATTTCTGTTCTCACCTGTACATACATACATACGCACGCACGTACATACACTCAATCAGAGAGAGATTGTTGGTAGCTAGGTAGCTGTGGCCAAGAAAGTGAGAGAATTGGGAGGAGGATTGGAGGAAGACGAAGGGGTTGATGGGGATGAGGCCTGGATGGGTAGGGGGGCTCGTGGAGGAGAGCTTCTTCGTTGGGTGTCCCGCCCACGAGAGCCGCAAGAAGAACGAGAAGAACATCTTCTGCCTCGGCTGCTGCGCCAGCAT-CTGCCCCCACTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAGGTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGC-TCCTTTGTTCAGCCATACACGATCAACAGCGCAAAGGTGATATTTCTGAA-GCCAAGGCCTCAGTCGAGGCCGTTCAAGGGCTCTGGCAACATCTGCTTGACATGTGACAGGATCCTGCAGGAGCCCTTCCATTTCTGCTGCCTCTCTTGCAAGGTGGATCACGTGATGATGCAGGGCGGCGACCTCTCCAACATCCTCTACATGTCCGGCGGCTCCTCCGGCGAGCCCGACCTCGCCGCCGGCTTCCCGCGCTTCGAGAACCTCCGCGTCGACGGCGGCGGCGGCGGCGGCGGCGGCCTCTCCGACGACGACGACGACCACCAGGTGACCACACCCAACTCCATCCTCGAAGACCCCCTCCACCACCACCACCACCAGTACTACGGCGGCGGCGGCTCCAGCAACAACGGCCGGAGCACGTCGCCGGCGCCAACGACGGCCGATGTCCCGAGGAAGAAGAAGAGCGGCGGCGGCGGCGGGTTCTTCCCCCAGATCGTGCTGTCACTGAACAACAGGAGGAAGGGCGCCCCACACAGGTCGCCTCTCGCGTGATCATCATCAGATCGTCACGTACGCGTAAACCGTGTTTCGATCGCTAGTACAGATAATCATGAACACCTCCCCCTACTATTATATAATTAGTTGCTCTCATTACCTATCTTAATTGTAATCCCCTTATGATTATTAGTAGCATTGTAGAGAGAGAAAGAGAGTGTGTGTGTGGTTGTGGTGATGGATGATGGTGTGGCCTTTGGCTGGCTAGGGTCACCTTCTTTAGGGCAAGCAGTGTTTTGACGAGATTTGAGAGAGGAGAGAACCAGCTAAGCTTGCAAACTCCTCCCTGTTACAAGACTAGGTAGGCACGGACTTTGTGGGGGCCCCTGTGCAGGGACCCCAAAAGATTGGCTACCAATTTTGTACTTGCTGTAATGGGGGTTAATTAGG]
[+] EMBL AA754264 [TCTCGCTCTCAACTCGCATCGATTTAATTTCTGTTCTCACCTGTACATACATACATACGCACGCACGTACATACACTCAATCAGAGAGAGATTGTTGGTAGCTAGGTAGCTGTGGCCAAGAAAGTRAGAGAATTGGGAGGAGGATTGGAGGAAGACGAAGGGtt ]
[+] EMBL AK111793 [ TTTCTGTTCTCACCTGTACATACATACATACGCACGCACGTACATACACTCAATCAGAGAGAGATTGTTGGTAGCTAGGTAGCTGTGGCCAAGAAAGTGAGAGAATTGGGAGGAGGATTGGAGGAAGACGAAGGGGTTGATGGGGATGAGGCCTGGATGGGTAGGGGGGCTCGTGGAGGAGAGCTTCTTCGTTGGGTGTCCCGCCCACGAGAGCCGCAAGAAGAACGAGAAGAACATCTTCTGCCTCGGCTGCTGCGCCAGCAT CTGCCCCCACTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAGGTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGC TCCTTTGTTCAGCCATACACGATCAACAGCGCAAAGGTGATATTTCTGAA GCCAAGGCCTCAGTCGAGGCCGTTCAAGGGCTCTGGCAACATCTGCTTGACATGTGACAGGATCCTGCAGGAGCCCTTCCATTTCTGCTGCCTCTCTTGCAAGGTGGATCACGTGATGATGCAGGGCGGCGACCTCTCCAACATCCTCTACATGTCCGGCGGCTCCTCCGGCGAGCCCGACCTCGCCGCCGGCTTCCCGCGCTTCGAGAACCTCCGCGTCGACGGCGGCGGCGGCGGCGGCGGCGGCCTCTCCGACGACGACGACGACCACCAGGTGACCACACCCAACTCCATCCTCGAAGACCCCCTCCACCACCACCACCACCAGTACTACGGCGGCGGCGGCTCCAGCAACAACGGCCGGAGCACGTCGCCGGCGCCAACGACGGCCGATGTCCCGAGGAAGAAGAAGAGCGGCGGCGGCGGCGGGTTCTTCCCCCAGATCGTGCTGTCACTGAACAACAGGAGGAAGGGCGCCCCACACAGGTCGCCTCTCGCGTGATCATCATCAGATCGTCACGTACGCGTAAACCGTGTTTCGATCGCTAGTACAGATAATCATGAACACCTCCCCCTACTATTATATAATTAGTTGCTCTCATTACCTATCTTAATTGTAATCCCCTTATGATTATTAGTAGCATTGTAGAGAGAGAAAGAGAGTGTGTGTGTGGTTGTGGTGATGGATGATGGTGTGGCCTTTGGCTGGCTAGGGTCACCTTCTTTAGGGCAAGCAGTGTTTTGACGAGATTTGAGAGAGGAGAGAACCAGCTAAGCTTGCAAACTCCTCCCTGTTACAAGACTAGGTAGGCACGGACTTTGTGGGGGCCCCTGTGCAGGGACCCCAAAAGATTGGCTACCAATTTTGTACTTGCTGTAATGGGGGTTAATTAGG]
[+] EMBL C26465 [ ACATACATACGCACGCACGTACATACACTCAATCAGAGAGAGATTGTTGGTAGCTAGGTAGCTGTGGCCAAGAAAGTGAGAGAATTGGGAGGAGGATTGGAGGAAGACGAAGGGGTTGATGGGGATGAGGCCTGGATGGGTAGGGGGGCTCGTGGAGGAGAGCTTCTTCGTTGGGTGTCCCGCCCACGAGAGCCGCAAGAAGAACGAGAAGAACATCTTCTGCCTCGGCTGCTGCGCCA CATCCTGCCCCCACTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAGGTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGCTTCTTTTGTTCAGCCATACACGATCAACAGCGCAAAGGTGATATTTCTTAAGGCCAA GCCTCAGTCGA GCCGTTCAAGGGCTTTGGCA ]
consensusID : consensus_8145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 442 fasta sequence
[CCAGATCGTGCTGTCACTGAACAACAGGAGGAAGGGCGCCCCACACAGGTCGCCTCTCGCGTGATCATCATCAGATCGTCACGTACGCGTAAACCGTGTTTCGATCGCTAGTACAGATAATCATGAACACCTCCCCCTACTATTATATAATTAGTTGCTCTCATTACCTATCTTAATTGTAATCCCCTTATGATTATTAGTAGCATTGTAGAGAGAGAAAGAGAGTGTGTGTGTGGTTGTGGTGATGGATGATGGTGTGGCCTTTGGCTGGCTAGGGTCACCATCTTTAGGGCAAGCAGTGTTTTGACGAGATTTGAGAGAGGAGAGAACCAGCTAAGCTTGCAAACTCCTCCCTGTTACAAGACTAGGTAGGCACGGACTTTGTGGGGGCCCCTGTGCAGGGACCCCAAAAGATTGGCTACCAATTTTGTAAAAAAAAAAA]
[+] EMBL AU069499 [CCAGATCGTGCTGTCACTGAACAACAGGAGGAAGGGCGCCCCACACAGGTCGCCTCTCGCGTGATCATCATCAGATCGTCACGTACGCGTAAACCGTGTTTCGATCGCTAGTACAGATAATCATGAACACCTCCCCCTACTATTATATAATTAGTTGCTCTCATTACCTATCTTAATTGTAATCCCCTTATGATTATTAGTAGCATTGTAGAGAGAGAAAGAGAGTGTGTGTGTGGTTGTGGTGATGGATGATGGTGTGGCCTTTGGCTGGCTAGGGTCACCATCTTTAGGGCAAGCAGTGTTTTGACGAGATTTGAGAGAGGAGAGAACCAGCTAAGCTTGCAAACTCCTCCCTGTTACAAGACTAGGTAGGCACGGACTTTGTGGGGGCCCCTGTGCAGGGACCCCAAAAGATTGGCTACCAATTTTGTAAAAAAAAAAA]
[+] EMBL AU092870 [CCAGATCGTGCTGTCACTGAACAACAGGAGGAAGGGCGCCCCACACAGGTCGCCTCTCGCGTGATCATCATCAGATCGTCACGTACGCGTAAACCGTGTTTCGATCGCTAGTACAGATAATCATGAACACCTCCCCCTACTATTATATAATTAGTTGCTCTCATTACCTATCTTAATTGTAATCCCCTTATGATTATTAGTAGCATTGTAGAGAGAGAAAGAGAGTGTGTGTGTGGTTGTGGTGATGGATGATGGTGTGGCCTTTGGCTGGCTAGGGTCACCATCTTTAGGGCAAGCAGTGTTTTGACGAGATTTGAGAGAGGAGAGAACCAGCTAAGCTTGCAAACTCCTCCCTGTTACAAGACTAGGTAGGCACGGACTTTGTGGGGGCCCCTGTGCAGGGACCCCAAAAGATTGGCTACCAATTTTGTAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8145#0 TCTCGCTCTCAACTCGCATCGATTTAATTTCTGTTCTCACCTGTACATACATACATACGC 60
consensus_8145#1 ------------------------------------------------------------
consensus_8145#0 ACGCACGTACATACACTCAATCAGAGAGAGATTGTTGGTAGCTAGGTAGCTGTGGCCAAG 120
consensus_8145#1 ------------------------------------------------------------
consensus_8145#0 AAAGTGAGAGAATTGGGAGGAGGATTGGAGGAAGACGAAGGGGTTGATGGGGATGAGGCC 180
consensus_8145#1 ------------------------------------------------------------
consensus_8145#0 TGGATGGGTAGGGGGGCTCGTGGAGGAGAGCTTCTTCGTTGGGTGTCCCGCCCACGAGAG 240
consensus_8145#1 ------------------------------------------------------------
consensus_8145#0 CCGCAAGAAGAACGAGAAGAACATCTTCTGCCTCGGCTGCTGCGCCAGCATCTGCCCCCA 300
consensus_8145#1 ------------------------------------------------------------
consensus_8145#0 CTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAGGTTAGGAGGTATGTGTACAACGA 360
consensus_8145#1 ------------------------------------------------------------
consensus_8145#0 CGTTGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGCTCCTTTGTTCAGCCATACAC 420
consensus_8145#1 ------------------------------------------------------------
consensus_8145#0 GATCAACAGCGCAAAGGTGATATTTCTGAAGCCAAGGCCTCAGTCGAGGCCGTTCAAGGG 480
consensus_8145#1 ------------------------------------------------------------
consensus_8145#0 CTCTGGCAACATCTGCTTGACATGTGACAGGATCCTGCAGGAGCCCTTCCATTTCTGCTG 540
consensus_8145#1 ------------------------------------------------------------
consensus_8145#0 CCTCTCTTGCAAGGTGGATCACGTGATGATGCAGGGCGGCGACCTCTCCAACATCCTCTA 600
consensus_8145#1 ------------------------------------------------------------
consensus_8145#0 CATGTCCGGCGGCTCCTCCGGCGAGCCCGACCTCGCCGCCGGCTTCCCGCGCTTCGAGAA 660
consensus_8145#1 ------------------------------------------------------------
consensus_8145#0 CCTCCGCGTCGACGGCGGCGGCGGCGGCGGCGGCGGCCTCTCCGACGACGACGACGACCA 720
consensus_8145#1 ------------------------------------------------------------
consensus_8145#0 CCAGGTGACCACACCCAACTCCATCCTCGAAGACCCCCTCCACCACCACCACCACCAGTA 780
consensus_8145#1 ------------------------------------------------------------
consensus_8145#0 CTACGGCGGCGGCGGCTCCAGCAACAACGGCCGGAGCACGTCGCCGGCGCCAACGACGGC 840
consensus_8145#1 ------------------------------------------------------------
consensus_8145#0 CGATGTCCCGAGGAAGAAGAAGAGCGGCGGCGGCGGCGGGTTCTTCCCCCAGATCGTGCT 900
consensus_8145#1 ------------------------------------------------CCAGATCGTGCT 12
************
consensus_8145#0 GTCACTGAACAACAGGAGGAAGGGCGCCCCACACAGGTCGCCTCTCGCGTGATCATCATC 960
consensus_8145#1 GTCACTGAACAACAGGAGGAAGGGCGCCCCACACAGGTCGCCTCTCGCGTGATCATCATC 72
************************************************************
consensus_8145#0 AGATCGTCACGTACGCGTAAACCGTGTTTCGATCGCTAGTACAGATAATCATGAACACCT 1020
consensus_8145#1 AGATCGTCACGTACGCGTAAACCGTGTTTCGATCGCTAGTACAGATAATCATGAACACCT 132
************************************************************
consensus_8145#0 CCCCCTACTATTATATAATTAGTTGCTCTCATTACCTATCTTAATTGTAATCCCCTTATG 1080
consensus_8145#1 CCCCCTACTATTATATAATTAGTTGCTCTCATTACCTATCTTAATTGTAATCCCCTTATG 192
************************************************************
consensus_8145#0 ATTATTAGTAGCATTGTAGAGAGAGAAAGAGAGTGTGTGTGTGGTTGTGGTGATGGATGA 1140
consensus_8145#1 ATTATTAGTAGCATTGTAGAGAGAGAAAGAGAGTGTGTGTGTGGTTGTGGTGATGGATGA 252
************************************************************
consensus_8145#0 TGGTGTGGCCTTTGGCTGGCTAGGGTCACCTTCTTTAGGGCAAGCAGTGTTTTGACGAGA 1200
consensus_8145#1 TGGTGTGGCCTTTGGCTGGCTAGGGTCACCATCTTTAGGGCAAGCAGTGTTTTGACGAGA 312
****************************** *****************************
consensus_8145#0 TTTGAGAGAGGAGAGAACCAGCTAAGCTTGCAAACTCCTCCCTGTTACAAGACTAGGTAG 1260
consensus_8145#1 TTTGAGAGAGGAGAGAACCAGCTAAGCTTGCAAACTCCTCCCTGTTACAAGACTAGGTAG 372
************************************************************
consensus_8145#0 GCACGGACTTTGTGGGGGCCCCTGTGCAGGGACCCCAAAAGATTGGCTACCAATTTTGTA 1320
consensus_8145#1 GCACGGACTTTGTGGGGGCCCCTGTGCAGGGACCCCAAAAGATTGGCTACCAATTTTGTA 432
************************************************************
consensus_8145#0 CTTGCTGTAATGGGGGTTAATTAGG 1345
consensus_8145#1 AAAAAAAAAA--------------- 442
**
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||