These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8145#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1345 fasta sequence [TCTCGCTCTCAACTCGCATCGATTTAATTTCTGTTCTCACCTGTACATACATACATACGCACGCACGTACATACACTCAATCAGAGAGAGATTGTTGGTAGCTAGGTAGCTGTGGCCAAGAAAGTGAGAGAATTGGGAGGAGGATTGGAGGAAGACGAAGGGGTTGATGGGGATGAGGCCTGGATGGGTAGGGGGGCTCGTGGAGGAGAGCTTCTTCGTTGGGTGTCCCGCCCACGAGAGCCGCAAGAAGAACGAGAAGAACATCTTCTGCCTCGGCTGCTGCGCCAGCAT-CTGCCCCCACTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAGGTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGC-TCCTTTGTTCAGCCATACACGATCAACAGCGCAAAGGTGATATTTCTGAA-GCCAAGGCCTCAGTCGAGGCCGTTCAAGGGCTCTGGCAACATCTGCTTGACATGTGACAGGATCCTGCAGGAGCCCTTCCATTTCTGCTGCCTCTCTTGCAAGGTGGATCACGTGATGATGCAGGGCGGCGACCTCTCCAACATCCTCTACATGTCCGGCGGCTCCTCCGGCGAGCCCGACCTCGCCGCCGGCTTCCCGCGCTTCGAGAACCTCCGCGTCGACGGCGGCGGCGGCGGCGGCGGCGGCCTCTCCGACGACGACGACGACCACCAGGTGACCACACCCAACTCCATCCTCGAAGACCCCCTCCACCACCACCACCACCAGTACTACGGCGGCGGCGGCTCCAGCAACAACGGCCGGAGCACGTCGCCGGCGCCAACGACGGCCGATGTCCCGAGGAAGAAGAAGAGCGGCGGCGGCGGCGGGTTCTTCCCCCAGATCGTGCTGTCACTGAACAACAGGAGGAAGGGCGCCCCACACAGGTCGCCTCTCGCGTGATCATCATCAGATCGTCACGTACGCGTAAACCGTGTTTCGATCGCTAGTACAGATAATCATGAACACCTCCCCCTACTATTATATAATTAGTTGCTCTCATTACCTATCTTAATTGTAATCCCCTTATGATTATTAGTAGCATTGTAGAGAGAGAAAGAGAGTGTGTGTGTGGTTGTGGTGATGGATGATGGTGTGGCCTTTGGCTGGCTAGGGTCACCTTCTTTAGGGCAAGCAGTGTTTTGACGAGATTTGAGAGAGGAGAGAACCAGCTAAGCTTGCAAACTCCTCCCTGTTACAAGACTAGGTAGGCACGGACTTTGTGGGGGCCCCTGTGCAGGGACCCCAAAAGATTGGCTACCAATTTTGTACTTGCTGTAATGGGGGTTAATTAGG] [+] EMBL AA754264 [TCTCGCTCTCAACTCGCATCGATTTAATTTCTGTTCTCACCTGTACATACATACATACGCACGCACGTACATACACTCAATCAGAGAGAGATTGTTGGTAGCTAGGTAGCTGTGGCCAAGAAAGTRAGAGAATTGGGAGGAGGATTGGAGGAAGACGAAGGGtt ] [+] EMBL AK111793 [ TTTCTGTTCTCACCTGTACATACATACATACGCACGCACGTACATACACTCAATCAGAGAGAGATTGTTGGTAGCTAGGTAGCTGTGGCCAAGAAAGTGAGAGAATTGGGAGGAGGATTGGAGGAAGACGAAGGGGTTGATGGGGATGAGGCCTGGATGGGTAGGGGGGCTCGTGGAGGAGAGCTTCTTCGTTGGGTGTCCCGCCCACGAGAGCCGCAAGAAGAACGAGAAGAACATCTTCTGCCTCGGCTGCTGCGCCAGCAT CTGCCCCCACTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAGGTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGC TCCTTTGTTCAGCCATACACGATCAACAGCGCAAAGGTGATATTTCTGAA GCCAAGGCCTCAGTCGAGGCCGTTCAAGGGCTCTGGCAACATCTGCTTGACATGTGACAGGATCCTGCAGGAGCCCTTCCATTTCTGCTGCCTCTCTTGCAAGGTGGATCACGTGATGATGCAGGGCGGCGACCTCTCCAACATCCTCTACATGTCCGGCGGCTCCTCCGGCGAGCCCGACCTCGCCGCCGGCTTCCCGCGCTTCGAGAACCTCCGCGTCGACGGCGGCGGCGGCGGCGGCGGCGGCCTCTCCGACGACGACGACGACCACCAGGTGACCACACCCAACTCCATCCTCGAAGACCCCCTCCACCACCACCACCACCAGTACTACGGCGGCGGCGGCTCCAGCAACAACGGCCGGAGCACGTCGCCGGCGCCAACGACGGCCGATGTCCCGAGGAAGAAGAAGAGCGGCGGCGGCGGCGGGTTCTTCCCCCAGATCGTGCTGTCACTGAACAACAGGAGGAAGGGCGCCCCACACAGGTCGCCTCTCGCGTGATCATCATCAGATCGTCACGTACGCGTAAACCGTGTTTCGATCGCTAGTACAGATAATCATGAACACCTCCCCCTACTATTATATAATTAGTTGCTCTCATTACCTATCTTAATTGTAATCCCCTTATGATTATTAGTAGCATTGTAGAGAGAGAAAGAGAGTGTGTGTGTGGTTGTGGTGATGGATGATGGTGTGGCCTTTGGCTGGCTAGGGTCACCTTCTTTAGGGCAAGCAGTGTTTTGACGAGATTTGAGAGAGGAGAGAACCAGCTAAGCTTGCAAACTCCTCCCTGTTACAAGACTAGGTAGGCACGGACTTTGTGGGGGCCCCTGTGCAGGGACCCCAAAAGATTGGCTACCAATTTTGTACTTGCTGTAATGGGGGTTAATTAGG] [+] EMBL C26465 [ ACATACATACGCACGCACGTACATACACTCAATCAGAGAGAGATTGTTGGTAGCTAGGTAGCTGTGGCCAAGAAAGTGAGAGAATTGGGAGGAGGATTGGAGGAAGACGAAGGGGTTGATGGGGATGAGGCCTGGATGGGTAGGGGGGCTCGTGGAGGAGAGCTTCTTCGTTGGGTGTCCCGCCCACGAGAGCCGCAAGAAGAACGAGAAGAACATCTTCTGCCTCGGCTGCTGCGCCA CATCCTGCCCCCACTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAGGTTAGGAGGTATGTGTACAACGACGTTGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGCTTCTTTTGTTCAGCCATACACGATCAACAGCGCAAAGGTGATATTTCTTAAGGCCAA GCCTCAGTCGA GCCGTTCAAGGGCTTTGGCA ] consensusID : consensus_8145#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 442 fasta sequence [CCAGATCGTGCTGTCACTGAACAACAGGAGGAAGGGCGCCCCACACAGGTCGCCTCTCGCGTGATCATCATCAGATCGTCACGTACGCGTAAACCGTGTTTCGATCGCTAGTACAGATAATCATGAACACCTCCCCCTACTATTATATAATTAGTTGCTCTCATTACCTATCTTAATTGTAATCCCCTTATGATTATTAGTAGCATTGTAGAGAGAGAAAGAGAGTGTGTGTGTGGTTGTGGTGATGGATGATGGTGTGGCCTTTGGCTGGCTAGGGTCACCATCTTTAGGGCAAGCAGTGTTTTGACGAGATTTGAGAGAGGAGAGAACCAGCTAAGCTTGCAAACTCCTCCCTGTTACAAGACTAGGTAGGCACGGACTTTGTGGGGGCCCCTGTGCAGGGACCCCAAAAGATTGGCTACCAATTTTGTAAAAAAAAAAA] [+] EMBL AU069499 [CCAGATCGTGCTGTCACTGAACAACAGGAGGAAGGGCGCCCCACACAGGTCGCCTCTCGCGTGATCATCATCAGATCGTCACGTACGCGTAAACCGTGTTTCGATCGCTAGTACAGATAATCATGAACACCTCCCCCTACTATTATATAATTAGTTGCTCTCATTACCTATCTTAATTGTAATCCCCTTATGATTATTAGTAGCATTGTAGAGAGAGAAAGAGAGTGTGTGTGTGGTTGTGGTGATGGATGATGGTGTGGCCTTTGGCTGGCTAGGGTCACCATCTTTAGGGCAAGCAGTGTTTTGACGAGATTTGAGAGAGGAGAGAACCAGCTAAGCTTGCAAACTCCTCCCTGTTACAAGACTAGGTAGGCACGGACTTTGTGGGGGCCCCTGTGCAGGGACCCCAAAAGATTGGCTACCAATTTTGTAAAAAAAAAAA] [+] EMBL AU092870 [CCAGATCGTGCTGTCACTGAACAACAGGAGGAAGGGCGCCCCACACAGGTCGCCTCTCGCGTGATCATCATCAGATCGTCACGTACGCGTAAACCGTGTTTCGATCGCTAGTACAGATAATCATGAACACCTCCCCCTACTATTATATAATTAGTTGCTCTCATTACCTATCTTAATTGTAATCCCCTTATGATTATTAGTAGCATTGTAGAGAGAGAAAGAGAGTGTGTGTGTGGTTGTGGTGATGGATGATGGTGTGGCCTTTGGCTGGCTAGGGTCACCATCTTTAGGGCAAGCAGTGTTTTGACGAGATTTGAGAGAGGAGAGAACCAGCTAAGCTTGCAAACTCCTCCCTGTTACAAGACTAGGTAGGCACGGACTTTGTGGGGGCCCCTGTGCAGGGACCCCAAAAGATTGGCTACCAATTTTGTAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8145#0 TCTCGCTCTCAACTCGCATCGATTTAATTTCTGTTCTCACCTGTACATACATACATACGC 60 consensus_8145#1 ------------------------------------------------------------ consensus_8145#0 ACGCACGTACATACACTCAATCAGAGAGAGATTGTTGGTAGCTAGGTAGCTGTGGCCAAG 120 consensus_8145#1 ------------------------------------------------------------ consensus_8145#0 AAAGTGAGAGAATTGGGAGGAGGATTGGAGGAAGACGAAGGGGTTGATGGGGATGAGGCC 180 consensus_8145#1 ------------------------------------------------------------ consensus_8145#0 TGGATGGGTAGGGGGGCTCGTGGAGGAGAGCTTCTTCGTTGGGTGTCCCGCCCACGAGAG 240 consensus_8145#1 ------------------------------------------------------------ consensus_8145#0 CCGCAAGAAGAACGAGAAGAACATCTTCTGCCTCGGCTGCTGCGCCAGCATCTGCCCCCA 300 consensus_8145#1 ------------------------------------------------------------ consensus_8145#0 CTGCGCCCCCTCCCACCGCCACCACCCTCTCCTCCAGGTTAGGAGGTATGTGTACAACGA 360 consensus_8145#1 ------------------------------------------------------------ consensus_8145#0 CGTTGTTCGCCTGGATGATCTCGACAAGCTCATCGACTGCTCCTTTGTTCAGCCATACAC 420 consensus_8145#1 ------------------------------------------------------------ consensus_8145#0 GATCAACAGCGCAAAGGTGATATTTCTGAAGCCAAGGCCTCAGTCGAGGCCGTTCAAGGG 480 consensus_8145#1 ------------------------------------------------------------ consensus_8145#0 CTCTGGCAACATCTGCTTGACATGTGACAGGATCCTGCAGGAGCCCTTCCATTTCTGCTG 540 consensus_8145#1 ------------------------------------------------------------ consensus_8145#0 CCTCTCTTGCAAGGTGGATCACGTGATGATGCAGGGCGGCGACCTCTCCAACATCCTCTA 600 consensus_8145#1 ------------------------------------------------------------ consensus_8145#0 CATGTCCGGCGGCTCCTCCGGCGAGCCCGACCTCGCCGCCGGCTTCCCGCGCTTCGAGAA 660 consensus_8145#1 ------------------------------------------------------------ consensus_8145#0 CCTCCGCGTCGACGGCGGCGGCGGCGGCGGCGGCGGCCTCTCCGACGACGACGACGACCA 720 consensus_8145#1 ------------------------------------------------------------ consensus_8145#0 CCAGGTGACCACACCCAACTCCATCCTCGAAGACCCCCTCCACCACCACCACCACCAGTA 780 consensus_8145#1 ------------------------------------------------------------ consensus_8145#0 CTACGGCGGCGGCGGCTCCAGCAACAACGGCCGGAGCACGTCGCCGGCGCCAACGACGGC 840 consensus_8145#1 ------------------------------------------------------------ consensus_8145#0 CGATGTCCCGAGGAAGAAGAAGAGCGGCGGCGGCGGCGGGTTCTTCCCCCAGATCGTGCT 900 consensus_8145#1 ------------------------------------------------CCAGATCGTGCT 12 ************ consensus_8145#0 GTCACTGAACAACAGGAGGAAGGGCGCCCCACACAGGTCGCCTCTCGCGTGATCATCATC 960 consensus_8145#1 GTCACTGAACAACAGGAGGAAGGGCGCCCCACACAGGTCGCCTCTCGCGTGATCATCATC 72 ************************************************************ consensus_8145#0 AGATCGTCACGTACGCGTAAACCGTGTTTCGATCGCTAGTACAGATAATCATGAACACCT 1020 consensus_8145#1 AGATCGTCACGTACGCGTAAACCGTGTTTCGATCGCTAGTACAGATAATCATGAACACCT 132 ************************************************************ consensus_8145#0 CCCCCTACTATTATATAATTAGTTGCTCTCATTACCTATCTTAATTGTAATCCCCTTATG 1080 consensus_8145#1 CCCCCTACTATTATATAATTAGTTGCTCTCATTACCTATCTTAATTGTAATCCCCTTATG 192 ************************************************************ consensus_8145#0 ATTATTAGTAGCATTGTAGAGAGAGAAAGAGAGTGTGTGTGTGGTTGTGGTGATGGATGA 1140 consensus_8145#1 ATTATTAGTAGCATTGTAGAGAGAGAAAGAGAGTGTGTGTGTGGTTGTGGTGATGGATGA 252 ************************************************************ consensus_8145#0 TGGTGTGGCCTTTGGCTGGCTAGGGTCACCTTCTTTAGGGCAAGCAGTGTTTTGACGAGA 1200 consensus_8145#1 TGGTGTGGCCTTTGGCTGGCTAGGGTCACCATCTTTAGGGCAAGCAGTGTTTTGACGAGA 312 ****************************** ***************************** consensus_8145#0 TTTGAGAGAGGAGAGAACCAGCTAAGCTTGCAAACTCCTCCCTGTTACAAGACTAGGTAG 1260 consensus_8145#1 TTTGAGAGAGGAGAGAACCAGCTAAGCTTGCAAACTCCTCCCTGTTACAAGACTAGGTAG 372 ************************************************************ consensus_8145#0 GCACGGACTTTGTGGGGGCCCCTGTGCAGGGACCCCAAAAGATTGGCTACCAATTTTGTA 1320 consensus_8145#1 GCACGGACTTTGTGGGGGCCCCTGTGCAGGGACCCCAAAAGATTGGCTACCAATTTTGTA 432 ************************************************************ consensus_8145#0 CTTGCTGTAATGGGGGTTAATTAGG 1345 consensus_8145#1 AAAAAAAAAA--------------- 442 ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||