cluster # 815

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Oryza sativa
cluster # 815 cluster # 815 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_815#0 length = 695 sequences # 1

consensus_815#1 length = 671 sequences # 1

consensusID : consensus_815#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence

                              [TTTTTTTTTTTCCTTATCAAGTCATTCTTCTTGATTATATAGTCTTCTGGAAATATACTTAGATACAGCAGACAAGTTTTTATATGGTGAGGAAGATCAAAGTAACTCAGGGATAATATACTTATCATTCCATCAATGCTAGGATTTCTTTCAAGTGCACAACCAATTGAATTTTTCACATGATCCCATTGATCCTTCGTCCTTTCTTTGTTAGCCAATAAACTAGATATAGCTATAATTGCCAGAGGTAATCCACCACATTTGTTCAATATTTGATCAGAAACTTCTTCGAGGTGTGAAGGGCATATCTCTCCAGTGCTGAATAGTCTTCTGTGAAATAACTGTCTTGAATGTGCCATATTCAGAGGCCTAATATTATAAATATGTCCACTGAATGAGGCACATGTTGATCGAGCGACATCATTTATACGAGTTGTGGTGATTATTCTACTTGCACAATTGTTCATTGGGAGTGCACACTTGATTATATTCCATATGTCAACATTCCATATATCATCAACTATAATGAGGTACCTTTTGTCCGCGAGGAAATTGGAGATTCTGGTAATAAGTTGATTTTCATCCCCAGCACCTGTNGTCGGTATAACCCATGTGACTCGCTCCACTAAAAACAGTTCTGAAGATTCTCATCATATCTGGATTTCGTGAAACGGATATAANAGCTCCACAATCAA]

[+] EMBL CA759140             [TTTTTTTTTTTCCTTATCAAGTCATTCTTCTTGATTATATAGTCTTCTGGAAATATACTTAGATACAGCAGACAAGTTTTTATATGGTGAGGAAGATCAAAGTAACTCAGGGATAATATACTTATCATTCCATCAATGCTAGGATTTCTTTCAAGTGCACAACCAATTGAATTTTTCACATGATCCCATTGATCCTTCGTCCTTTCTTTGTTAGCCAATAAACTAGATATAGCTATAATTGCCAGAGGTAATCCACCACATTTGTTCAATATTTGATCAGAAACTTCTTCGAGGTGTGAAGGGCATATCTCTCCAGTGCTGAATAGTCTTCTGTGAAATAACTGTCTTGAATGTGCCATATTCAGAGGCCTAATATTATAAATATGTCCACTGAATGAGGCACATGTTGATCGAGCGACATCATTTATACGAGTTGTGGTGATTATTCTACTTGCACAATTGTTCATTGGGAGTGCACACTTGATTATATTCCATATGTCAACATTCCATATATCATCAACTATAATGAGGTACCTTTTGTCCGCGAGGAAATTGGAGATTCTGGTAATAAGTTGATTTTCATCCCCAGCACCTGTNGTCGGTATAACCCATGTGACTCGCTCCACTAAAAACAGTTCTGAAGATTCTCATCATATCTGGATTTCGTGAAACGGATATAANAGCTCCACAATCAA]




>consensus_815#0
TTTTTTTTTTTCCTTATCAAGTCATTCTTCTTGATTATATAGTCTTCTGGAAATATACTT
AGATACAGCAGACAAGTTTTTATATGGTGAGGAAGATCAAAGTAACTCAGGGATAATATA
CTTATCATTCCATCAATGCTAGGATTTCTTTCAAGTGCACAACCAATTGAATTTTTCACA
TGATCCCATTGATCCTTCGTCCTTTCTTTGTTAGCCAATAAACTAGATATAGCTATAATT
GCCAGAGGTAATCCACCACATTTGTTCAATATTTGATCAGAAACTTCTTCGAGGTGTGAA
GGGCATATCTCTCCAGTGCTGAATAGTCTTCTGTGAAATAACTGTCTTGAATGTGCCATA
TTCAGAGGCCTAATATTATAAATATGTCCACTGAATGAGGCACATGTTGATCGAGCGACA
TCATTTATACGAGTTGTGGTGATTATTCTACTTGCACAATTGTTCATTGGGAGTGCACAC
TTGATTATATTCCATATGTCAACATTCCATATATCATCAACTATAATGAGGTACCTTTTG
TCCGCGAGGAAATTGGAGATTCTGGTAATAAGTTGATTTTCATCCCCAGCACCTGTNGTC
GGTATAACCCATGTGACTCGCTCCACTAAAAACAGTTCTGAAGATTCTCATCATATCTGG
ATTTCGTGAAACGGATATAANAGCTCCACAATCAA

consensusID : consensus_815#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence

                              [TTTTTTTTTTAACTCAGTGATAATATACTTATCACTCCATCATTGCTAGGATTTCTTTCCAGCGCACAACCAATTGAATTTTTCACGTGATCCCATTGATCCTTCGTCCTTTCTTTGTTAGCCAAAAAACTAAATATAGCTCTAATTGCCACAGGAAAGCCACCACATTAGTTCAATATTTGACCAGAAACTTCTTCGAGGTGTGAAGGGCATATCTCTCCAGCGCTGAATATTCTTCTGTGAAATAACTGCCTTGAATGTGCCATATTCACAGGCCTAGAATTATAAATATCCCCACTGAATGACGCACATGTTGATCGAGCAACATCATTAATACCAGATGTGGTGATTATTCTACTTGCACAATTGTTCATTGGGAGCGCGCACTTGACTATATTCCATATAGCAACATTCCATATGTCGTCAACTATCATGAGGGACCTTTTGTACGCCAGGAACACCGTAGATTCTGCTTATAAGATGATTTTCATCCCCAGGATCTGAGTGGGTATTACCCACGCGATTCAATTCACTTTGAACGGTTATGCAGATTCTCATCAGATCTAGATTTCGCGAAACGCATATTAAGGCTGCACAGCACCTATCCACTTTGAGACTGTTATATACTCGGTTTGCGAGAGTGGTCTTGCCTAGGCCTCCTGGCCAACAAT]

[+] EMBL CA759125             [TTTTTTTTTTAACTCAGTGATAATATACTTATCACTCCATCATTGCTAGGATTTCTTTCCAGCGCACAACCAATTGAATTTTTCACGTGATCCCATTGATCCTTCGTCCTTTCTTTGTTAGCCAAAAAACTAAATATAGCTCTAATTGCCACAGGAAAGCCACCACATTAGTTCAATATTTGACCAGAAACTTCTTCGAGGTGTGAAGGGCATATCTCTCCAGCGCTGAATATTCTTCTGTGAAATAACTGCCTTGAATGTGCCATATTCACAGGCCTAGAATTATAAATATCCCCACTGAATGACGCACATGTTGATCGAGCAACATCATTAATACCAGATGTGGTGATTATTCTACTTGCACAATTGTTCATTGGGAGCGCGCACTTGACTATATTCCATATAGCAACATTCCATATGTCGTCAACTATCATGAGGGACCTTTTGTACGCCAGGAACACCGTAGATTCTGCTTATAAGATGATTTTCATCCCCAGGATCTGAGTGGGTATTACCCACGCGATTCAATTCACTTTGAACGGTTATGCAGATTCTCATCAGATCTAGATTTCGCGAAACGCATATTAAGGCTGCACAGCACCTATCCACTTTGAGACTGTTATATACTCGGTTTGCGAGAGTGGTCTTGCCTAGGCCTCCTGGCCAACAAT]




>consensus_815#1
TTTTTTTTTTAACTCAGTGATAATATACTTATCACTCCATCATTGCTAGGATTTCTTTCC
AGCGCACAACCAATTGAATTTTTCACGTGATCCCATTGATCCTTCGTCCTTTCTTTGTTA
GCCAAAAAACTAAATATAGCTCTAATTGCCACAGGAAAGCCACCACATTAGTTCAATATT
TGACCAGAAACTTCTTCGAGGTGTGAAGGGCATATCTCTCCAGCGCTGAATATTCTTCTG
TGAAATAACTGCCTTGAATGTGCCATATTCACAGGCCTAGAATTATAAATATCCCCACTG
AATGACGCACATGTTGATCGAGCAACATCATTAATACCAGATGTGGTGATTATTCTACTT
GCACAATTGTTCATTGGGAGCGCGCACTTGACTATATTCCATATAGCAACATTCCATATG
TCGTCAACTATCATGAGGGACCTTTTGTACGCCAGGAACACCGTAGATTCTGCTTATAAG
ATGATTTTCATCCCCAGGATCTGAGTGGGTATTACCCACGCGATTCAATTCACTTTGAAC
GGTTATGCAGATTCTCATCAGATCTAGATTTCGCGAAACGCATATTAAGGCTGCACAGCA
CCTATCCACTTTGAGACTGTTATATACTCGGTTTGCGAGAGTGGTCTTGCCTAGGCCTCC
TGGCCAACAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_815#0      TTTTTTTTTTTCCTTATCAAGTCATTCTTCTTGATTATATAGTCTTCTGGAAATATACTT 60
consensus_815#1      ------------------------------------------------------------
                                                                                 

consensus_815#0      AGATACAGCAGACAAGTTTTTATATGGTGAGGAAGATCAAAGTAACTCAGGGATAATATA 120
consensus_815#1      ---------------------------------TTTTTTTTTTAACTCAGTGATAATATA 27
                                                         *     ******** *********

consensus_815#0      CTTATCATTCCATCAATGCTAGGATTTCTTTCAAGTGCACAACCAATTGAATTTTTCACA 180
consensus_815#1      CTTATCACTCCATCATTGCTAGGATTTCTTTCCAGCGCACAACCAATTGAATTTTTCACG 87
                     ******* ******* **************** ** *********************** 

consensus_815#0      TGATCCCATTGATCCTTCGTCCTTTCTTTGTTAGCCAATAAACTAGATATAGCTATAATT 240
consensus_815#1      TGATCCCATTGATCCTTCGTCCTTTCTTTGTTAGCCAAAAAACTAAATATAGCTCTAATT 147
                     ************************************** ****** ******** *****

consensus_815#0      GCCAGAGGTAATCCACCACATTTGTTCAATATTTGATCAGAAACTTCTTCGAGGTGTGAA 300
consensus_815#1      GCCACAGGAAAGCCACCACATTAGTTCAATATTTGACCAGAAACTTCTTCGAGGTGTGAA 207
                     **** *** ** ********** ************* ***********************

consensus_815#0      GGGCATATCTCTCCAGTGCTGAATAGTCTTCTGTGAAATAACTGTCTTGAATGTGCCATA 360
consensus_815#1      GGGCATATCTCTCCAGCGCTGAATATTCTTCTGTGAAATAACTGCCTTGAATGTGCCATA 267
                     **************** ******** ****************** ***************

consensus_815#0      TTCAGAGGCCTAATATTATAAATATGTCCACTGAATGAGGCACATGTTGATCGAGCGACA 420
consensus_815#1      TTCACAGGCCTAGAATTATAAATATCCCCACTGAATGACGCACATGTTGATCGAGCAACA 327
                     **** *******  ***********  *********** ***************** ***

consensus_815#0      TCATTTATACGAGTTGTGGTGATTATTCTACTTGCACAATTGTTCATTGGGAGTGCACAC 480
consensus_815#1      TCATTAATACCAGATGTGGTGATTATTCTACTTGCACAATTGTTCATTGGGAGCGCGCAC 387
                     ***** **** ** *************************************** ** ***

consensus_815#0      TTGATTATATTCCATATGTCAACATTCCATATATCATCAACTATAATGAGGTACCTTTTG 540
consensus_815#1      TTGACTATATTCCATATAGCAACATTCCATATGTCGTCAACTATCATGAGGGACCTTTTG 447
                     **** ************  ************* ** ******** ****** ********

consensus_815#0      TCCGCGAGGAA-ATTGGAGATTCTGGTAATAAGTTGATTTTCATCCCCAGCACCTGTNGT 599
consensus_815#1      TACGCCAGGAACACCGTAGATTCTGCTTATAAGATGATTTTCATCCCCAGGATCTG-AGT 506
                     * *** ***** *  * ******** * ***** **************** * ***  **

consensus_815#0      CGGTATAACCCATGTGACTCGCTCCACTAAAAACAGTTCTGAAGATTCTCATCATATCTG 659
consensus_815#1      GGGTATTACCCACGCGATTCAATTCACTTTGAACGGTTATGCAGATTCTCATCAGATCTA 566
                      ***** ***** * ** **  * ****   *** *** ** ************ **** 

consensus_815#0      GATTTCGTGAAACGGATATAANAGCTCCACA--ATCAA---------------------- 695
consensus_815#1      GATTTCGCGAAACGCATATTAAGGCTGCACAGCACCTATCCACTTTGAGACTGTTATATA 626
                     ******* ****** **** *  *** ****  * * *                      

consensus_815#0      ---------------------------------------------
consensus_815#1      CTCGGTTTGCGAGAGTGGTCTTGCCTAGGCCTCCTGGCCAACAAT 671