These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [TTTTTTTTTTTCCTTATCAAGTCATTCTTCTTGATTATATAGTCTTCTGGAAATATACTTAGATACAGCAGACAAGTTTTTATATGGTGAGGAAGATCAAAGTAACTCAGGGATAATATACTTATCATTCCATCAATGCTAGGATTTCTTTCAAGTGCACAACCAATTGAATTTTTCACATGATCCCATTGATCCTTCGTCCTTTCTTTGTTAGCCAATAAACTAGATATAGCTATAATTGCCAGAGGTAATCCACCACATTTGTTCAATATTTGATCAGAAACTTCTTCGAGGTGTGAAGGGCATATCTCTCCAGTGCTGAATAGTCTTCTGTGAAATAACTGTCTTGAATGTGCCATATTCAGAGGCCTAATATTATAAATATGTCCACTGAATGAGGCACATGTTGATCGAGCGACATCATTTATACGAGTTGTGGTGATTATTCTACTTGCACAATTGTTCATTGGGAGTGCACACTTGATTATATTCCATATGTCAACATTCCATATATCATCAACTATAATGAGGTACCTTTTGTCCGCGAGGAAATTGGAGATTCTGGTAATAAGTTGATTTTCATCCCCAGCACCTGTNGTCGGTATAACCCATGTGACTCGCTCCACTAAAAACAGTTCTGAAGATTCTCATCATATCTGGATTTCGTGAAACGGATATAANAGCTCCACAATCAA] [+] EMBL CA759140 [TTTTTTTTTTTCCTTATCAAGTCATTCTTCTTGATTATATAGTCTTCTGGAAATATACTTAGATACAGCAGACAAGTTTTTATATGGTGAGGAAGATCAAAGTAACTCAGGGATAATATACTTATCATTCCATCAATGCTAGGATTTCTTTCAAGTGCACAACCAATTGAATTTTTCACATGATCCCATTGATCCTTCGTCCTTTCTTTGTTAGCCAATAAACTAGATATAGCTATAATTGCCAGAGGTAATCCACCACATTTGTTCAATATTTGATCAGAAACTTCTTCGAGGTGTGAAGGGCATATCTCTCCAGTGCTGAATAGTCTTCTGTGAAATAACTGTCTTGAATGTGCCATATTCAGAGGCCTAATATTATAAATATGTCCACTGAATGAGGCACATGTTGATCGAGCGACATCATTTATACGAGTTGTGGTGATTATTCTACTTGCACAATTGTTCATTGGGAGTGCACACTTGATTATATTCCATATGTCAACATTCCATATATCATCAACTATAATGAGGTACCTTTTGTCCGCGAGGAAATTGGAGATTCTGGTAATAAGTTGATTTTCATCCCCAGCACCTGTNGTCGGTATAACCCATGTGACTCGCTCCACTAAAAACAGTTCTGAAGATTCTCATCATATCTGGATTTCGTGAAACGGATATAANAGCTCCACAATCAA] consensusID : consensus_815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [TTTTTTTTTTAACTCAGTGATAATATACTTATCACTCCATCATTGCTAGGATTTCTTTCCAGCGCACAACCAATTGAATTTTTCACGTGATCCCATTGATCCTTCGTCCTTTCTTTGTTAGCCAAAAAACTAAATATAGCTCTAATTGCCACAGGAAAGCCACCACATTAGTTCAATATTTGACCAGAAACTTCTTCGAGGTGTGAAGGGCATATCTCTCCAGCGCTGAATATTCTTCTGTGAAATAACTGCCTTGAATGTGCCATATTCACAGGCCTAGAATTATAAATATCCCCACTGAATGACGCACATGTTGATCGAGCAACATCATTAATACCAGATGTGGTGATTATTCTACTTGCACAATTGTTCATTGGGAGCGCGCACTTGACTATATTCCATATAGCAACATTCCATATGTCGTCAACTATCATGAGGGACCTTTTGTACGCCAGGAACACCGTAGATTCTGCTTATAAGATGATTTTCATCCCCAGGATCTGAGTGGGTATTACCCACGCGATTCAATTCACTTTGAACGGTTATGCAGATTCTCATCAGATCTAGATTTCGCGAAACGCATATTAAGGCTGCACAGCACCTATCCACTTTGAGACTGTTATATACTCGGTTTGCGAGAGTGGTCTTGCCTAGGCCTCCTGGCCAACAAT] [+] EMBL CA759125 [TTTTTTTTTTAACTCAGTGATAATATACTTATCACTCCATCATTGCTAGGATTTCTTTCCAGCGCACAACCAATTGAATTTTTCACGTGATCCCATTGATCCTTCGTCCTTTCTTTGTTAGCCAAAAAACTAAATATAGCTCTAATTGCCACAGGAAAGCCACCACATTAGTTCAATATTTGACCAGAAACTTCTTCGAGGTGTGAAGGGCATATCTCTCCAGCGCTGAATATTCTTCTGTGAAATAACTGCCTTGAATGTGCCATATTCACAGGCCTAGAATTATAAATATCCCCACTGAATGACGCACATGTTGATCGAGCAACATCATTAATACCAGATGTGGTGATTATTCTACTTGCACAATTGTTCATTGGGAGCGCGCACTTGACTATATTCCATATAGCAACATTCCATATGTCGTCAACTATCATGAGGGACCTTTTGTACGCCAGGAACACCGTAGATTCTGCTTATAAGATGATTTTCATCCCCAGGATCTGAGTGGGTATTACCCACGCGATTCAATTCACTTTGAACGGTTATGCAGATTCTCATCAGATCTAGATTTCGCGAAACGCATATTAAGGCTGCACAGCACCTATCCACTTTGAGACTGTTATATACTCGGTTTGCGAGAGTGGTCTTGCCTAGGCCTCCTGGCCAACAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_815#0 TTTTTTTTTTTCCTTATCAAGTCATTCTTCTTGATTATATAGTCTTCTGGAAATATACTT 60 consensus_815#1 ------------------------------------------------------------ consensus_815#0 AGATACAGCAGACAAGTTTTTATATGGTGAGGAAGATCAAAGTAACTCAGGGATAATATA 120 consensus_815#1 ---------------------------------TTTTTTTTTTAACTCAGTGATAATATA 27 * ******** ********* consensus_815#0 CTTATCATTCCATCAATGCTAGGATTTCTTTCAAGTGCACAACCAATTGAATTTTTCACA 180 consensus_815#1 CTTATCACTCCATCATTGCTAGGATTTCTTTCCAGCGCACAACCAATTGAATTTTTCACG 87 ******* ******* **************** ** *********************** consensus_815#0 TGATCCCATTGATCCTTCGTCCTTTCTTTGTTAGCCAATAAACTAGATATAGCTATAATT 240 consensus_815#1 TGATCCCATTGATCCTTCGTCCTTTCTTTGTTAGCCAAAAAACTAAATATAGCTCTAATT 147 ************************************** ****** ******** ***** consensus_815#0 GCCAGAGGTAATCCACCACATTTGTTCAATATTTGATCAGAAACTTCTTCGAGGTGTGAA 300 consensus_815#1 GCCACAGGAAAGCCACCACATTAGTTCAATATTTGACCAGAAACTTCTTCGAGGTGTGAA 207 **** *** ** ********** ************* *********************** consensus_815#0 GGGCATATCTCTCCAGTGCTGAATAGTCTTCTGTGAAATAACTGTCTTGAATGTGCCATA 360 consensus_815#1 GGGCATATCTCTCCAGCGCTGAATATTCTTCTGTGAAATAACTGCCTTGAATGTGCCATA 267 **************** ******** ****************** *************** consensus_815#0 TTCAGAGGCCTAATATTATAAATATGTCCACTGAATGAGGCACATGTTGATCGAGCGACA 420 consensus_815#1 TTCACAGGCCTAGAATTATAAATATCCCCACTGAATGACGCACATGTTGATCGAGCAACA 327 **** ******* *********** *********** ***************** *** consensus_815#0 TCATTTATACGAGTTGTGGTGATTATTCTACTTGCACAATTGTTCATTGGGAGTGCACAC 480 consensus_815#1 TCATTAATACCAGATGTGGTGATTATTCTACTTGCACAATTGTTCATTGGGAGCGCGCAC 387 ***** **** ** *************************************** ** *** consensus_815#0 TTGATTATATTCCATATGTCAACATTCCATATATCATCAACTATAATGAGGTACCTTTTG 540 consensus_815#1 TTGACTATATTCCATATAGCAACATTCCATATGTCGTCAACTATCATGAGGGACCTTTTG 447 **** ************ ************* ** ******** ****** ******** consensus_815#0 TCCGCGAGGAA-ATTGGAGATTCTGGTAATAAGTTGATTTTCATCCCCAGCACCTGTNGT 599 consensus_815#1 TACGCCAGGAACACCGTAGATTCTGCTTATAAGATGATTTTCATCCCCAGGATCTG-AGT 506 * *** ***** * * ******** * ***** **************** * *** ** consensus_815#0 CGGTATAACCCATGTGACTCGCTCCACTAAAAACAGTTCTGAAGATTCTCATCATATCTG 659 consensus_815#1 GGGTATTACCCACGCGATTCAATTCACTTTGAACGGTTATGCAGATTCTCATCAGATCTA 566 ***** ***** * ** ** * **** *** *** ** ************ **** consensus_815#0 GATTTCGTGAAACGGATATAANAGCTCCACA--ATCAA---------------------- 695 consensus_815#1 GATTTCGCGAAACGCATATTAAGGCTGCACAGCACCTATCCACTTTGAGACTGTTATATA 626 ******* ****** **** * *** **** * * * consensus_815#0 --------------------------------------------- consensus_815#1 CTCGGTTTGCGAGAGTGGTCTTGCCTAGGCCTCCTGGCCAACAAT 671 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||