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Oryza sativa
cluster # 8154 cluster # 8154       Sequences # 5       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8154#0 length = 1337 sequences # 5  

consensusID : consensus_8154#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 1337
fasta sequence
                              [GTGTCCA-CTC-CTGCCCCCAGACTTTCTCCATTCCACCCCATCCTCGACTCGCAAGTACCCAGCTAAGATCAGGGAGCTCATCTCCAGGAGACGGCAATTAACAGGTAACTTCTCTAGTTCTCCTCGTCTCTTCTGCTCCATCTCCGGCGACCAGTGATTCTTGGTGTGCCACTACACTACTAGTGGTACTCCAACAAGTCTGACGGCCAATGCCAACTCAATCGCTGCTTTTCCCCAAAGGCGAATCTATCTGCATCTGGATTACCAAGGACGGCTAGTGAATAGAAGGGGGAGAGAGAGATGGACGGAGCAGCAGTTAGTGCTGCCACTGGGGTGATGGGTTCCCTCCTTGCCAAGCTATCTGCCTTGCTGGGAGAGGAATACAGGCTTCTGAAAGGTGTCAACTCTGACATTAGGTTCTTGAGAGATGAGCTGACTGCCATCAACAACTTTCTTATCAACATGTCAAATATGGAGGAGAACCTGGGTGAGCAGGAGAAGGAGTGGAGAAACAGGGTCCGAGAAATCGAGGATTGCATCGATTTATTCATGCGCAAATTCAATCATGGGGATGTGGATGCCAACTTTGTCCGCAGGACAGCAAAAAAGATAGGAATGTTATGGTCACGTCATGAAATTGCTAGCCAGATCCATCAACTTAAGGATTGTGTTAACGAAGAGAGTGCCCGTCGTTTGAGGTATAGATTTGGTGAAAGCAATGCCCGCATAGTTGAAATTGATCCTGGACTACCAGCACTCTATGTGGAAGCAGAGAAACTTGTTGGCATCCATGGCCCTATGGAGAAGATCATTGATTTGTTGACAAAACAGGATGGATCCTCACAACAGCTGAAAGTGGTTTCCATTGTGGGCTTTGGGGGCCTTGGCAAGACTACTCTTGCTAACCAAGTACTTAAAAAAATCAAGCATCAGTTTGATTGCACAGCTTTAGTATTTATTTCACGGAGTCCTGACATTAAGAAGATCTTATTTGTTTTGCTTAAAGATATGATCAACAAAAACAATTCTAATGATGAGAAGCACAAAAAAGTTGTTGGGATCAAGGCAGAAAAATCAGATGATGAGAAACAACTAATCAATAAGCTCAGAGAATACCTAACAAGTAGAAGGTGGGCACAAAAATAATTGGTTCTCTTTCATTTACTTTCCTGTTAAAGTCTTCATCTTAAATTTTTCAAGTCGTTTCCATTTGTTGAGGTCCCTTTTTCCTTTGCTGTACAATTTGATACAAGCCAATTCAAAACCCATGTAAATAGAATCATTACTCATATTTGTAATTAAAGGGTAAACTTGATAATATAAGACTTTGATGCCCT]

[+] EMBL CB678564             [GTGTCCACCTCTCTGCCCCCAGACTTTCTCCATTCCACCCCATCCTCGACTCGCAAGTACCCAGCTAAGATCAGGGAGCTCATCTCCAGGAGACGGCAATTAACAGGTAACTTCTCTAGTTCTCCTCGTCTCTTCTGCTCCATCTCCGGCGACCAGTGATTCTTGGTGTGCCACTACACTACTAGTGGTACTCCAACAAGTCTGACGGCCAATGCCAACTCAATCGCTGCTTTTCCCCAAAGGCGAATCTATCTGCATCTGGATTACCAAGGACGGCTAGTGAATAGAAGGGGGAGAGAGAGATGGACGGAGCAGCAGTTAGTGCTGCCACTGGGGTGATGGGTTCCCTCCTTGCCAAGCTATCTGCCTTGCTGGGAGAGGAATACAGGCTTCTGAAAGGTGTCAACTCTGACATTAGGTTCTTGAGAGATGAGCTGACTGCCATCAACAACTTTCTTATCAACATGTCAAATATGGAGGAGAACCTGGGTGAGCAGGAGAAGGAGTGGAGAAACAGGGTCCGAGAAATCGAGGATTGCATCGATTTATTCATGCGCAAATTCAATCATGGGGATGTGGATGCCAACTTTGTCCGCACGACAGCAAAAAAGATACGAATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB678525             [ TGTCCA CTC CTGCCCCCAGACTTTCTCCATTCCACCCCATCCTCGACTCGCAAGTACCCAGCTAAGATCAGGGAGCTCATCTCCAGGAGACGGCAATTAACAGGTAACTTCTCTAGTTCTCCTCGTCTCTTCTGCTCCATCTCCGGCGACCAGTGATTCTTGGTGTGCCACTACACTACTAGTGGTACTCCAACAAGTCTGACGGCCAATGCCAACTCAATCGCTGCTTTTCCCCAAAGGCGAATCTATCTGCATCTGGATTACCAAGGACGGCTAGTGAATAGAAGGGGGAGAGAGAGATGGACGGAGCAGCAGTTAGTGCTGCCACTGGGGTGATGGGTTCCCTCCTTGCCAAGCTATCTGCCTTGCTGGGAGAGGAATACAGGCTTCTGAAAGGTGTCAACTCTGACATTAGGTTCTTGAGAGATGAGCTGACTGCCATCAACAACTTTCTTATCAACATGTCAAATATGGAGGAGAACCTGGGTGAGCAGGAGAAGGAGTGGAGAAACAGGGTCCGAGAAATCGAGGATTGCATCGATTTATTCATGCGCAAATTCAATCATGGGGATGTGGATGCCAACTTTGTCCGCAGGACAGCAAAAAAGATAGGAATGTTATGGTCACGTCATGAAATTGCTAGCCAGATCCATCAACTTAAGGATTGTGTTAACGAAGAGAGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB676440             [                            TCCATTCCACCCCATCCTCGACTCGCAAGTACCCAGCTAAGATCAGGGAGCTCATCTCCAGGAGACGGCAATTAACAGGTAACTTCTCTAGTTCTCCTCGTCTCTTCTGCTCCATCTCCGGCGACCAGTGATTCTTGGTGTGCCACTACACTACTAGTGGTACTCCAACAAGTCTGACGGCCAATGCCAACTCAATCGCTGCTTTTCCCCAAAGGCGAATCTATCTGCATCTGGATTACCAAGGACGGCTAGTGAATAGAAGGGGGAGAGAGAGATGGACGGAGCAGCAGTTAGTGCTGCCACTGGGGTGATGGGTTCCCTCCTTGCCAAGCTATCTGCCTTGCTGGGAGAGGAATACAGGCTTCTGAAAGGTGTCAACTCTGACATTAGGTTCTTGAGAGATGAGCTGACTGCCATCAACAACTTTCTTATCAACATGTCAAATATGGAGGAGAACCTGGGTGAGCAGGAGAAGGAGTGGAGAAACAGGGTCCGAGAAATCGAGGATTGCATCGATTTATTCATGCGCAAATTCAATCATGGGGATGTGGATGCCAACTTTGTCCGCAGGACAGCAAAAAAGATAGGAATGTTATGGTCACGTCATGAAATTGCTAGCCAGATCCATCAACTTAAGGATTGTGTTAACGAAGAGAGTGCCCGTCGTTTGAGGTATAGATTTGGTGAAAGCAATGCCCGCATAGTTGAAATTGATCCTGGACTACCAGCACTCTATGTGGAAGCAGAGAAACTTGTTGGCATCCATGGCCCTATGGAGAAGATCATTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB678565             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AAGGATTGTGTTAACGAAGAGAGTGCCCGTCGTTTGAGGTATAGATTTGGTGAAAGCAATGCCCGCATAGTTGAAATTGATCCTGGACTACCAGCACTTTATGTGGAAGCAGAGAAACTTGTTGGCATCCATGGCCCTATGGAGAAGATCATTGATTTGTTGACAAAACAGGATGGATCCTCACAACAGCTGAAAGTGGTTTCCATTGTGGGCTTTGGGGGCCTTGGCAAGACTACTCTTGCTAACCAAGTACTTAAAAAAATCAAGCATCAGTTTGATTGCACAGCTTTAGTATTTATTTCACGGAGTCCTGACATTAAGAAGATCTTATTTGTTTTGCTTAAAGATATGATCAACAAAAACAATTCTAATGATGAGAAGCACAAAAAAGTTGTTGGGATCAAGGCAGAAAAATCAGATGATGAGAAACAACTAATCAATAAGCTCAGAGAATACCTAACAAGTAGAAGGTGGGCACAAAAATAATTGGTTCTCTTTCATTTACTTTCCTGTTAAAGTCTTCATCTTAAATTTTTCAAGTCGTTTCCATTTGTTGAGGTCCCTTTTTCCTTTGCTGTACAATTTGATACAAGCCAATTCAAAACCCATGTAAATAGAATCATTACTCATATTTGTAATTAAAGGGTAAACTTGATAATATAAGACTTTGATGCCCT]
[-] EMBL CB678526             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ATGGATCCTCCCAACAGGTGAAAGTGGTTTCCATTGTGGGCTTTGGGGGCCTTGGCAAGACTACTCTTGTTAACCAAGTACTTAAAAAAATCAAGCATCAGTTTGATTGCCCAGCTTTAGTATTTATTTCACGGAGTCCTGACACTAAGAAGATGTTATTTGTTTTGCTTAAAGATATGATCAACAAAATCAATTCTAATGATGAGAAGCACAAAAAAGTTGTTGGGATCAAGGCAGAAAAATCAGATGATGAGAAACAAATAATCAATAAGCTCAGAGAATACCTAACAAGTAGAAGGTGGGCACAAAAATAATTGGTTCTCTTTCATTTACTTTCCTGTTAAAGTGTTCATGTTAAATTTTTCAAGTGGTTTCCATCTGTTGAGGTCCCTTTTTCCGGAGATGTGCAATTTGATACAAGCCAATTCAAAACCCATGTAAATAGAATCATTACTCATAT                                             ]


>consensus_8154#0 GTGTCCACTCCTGCCCCCAGACTTTCTCCATTCCACCCCATCCTCGACTCGCAAGTACCC AGCTAAGATCAGGGAGCTCATCTCCAGGAGACGGCAATTAACAGGTAACTTCTCTAGTTC TCCTCGTCTCTTCTGCTCCATCTCCGGCGACCAGTGATTCTTGGTGTGCCACTACACTAC TAGTGGTACTCCAACAAGTCTGACGGCCAATGCCAACTCAATCGCTGCTTTTCCCCAAAG GCGAATCTATCTGCATCTGGATTACCAAGGACGGCTAGTGAATAGAAGGGGGAGAGAGAG ATGGACGGAGCAGCAGTTAGTGCTGCCACTGGGGTGATGGGTTCCCTCCTTGCCAAGCTA TCTGCCTTGCTGGGAGAGGAATACAGGCTTCTGAAAGGTGTCAACTCTGACATTAGGTTC TTGAGAGATGAGCTGACTGCCATCAACAACTTTCTTATCAACATGTCAAATATGGAGGAG AACCTGGGTGAGCAGGAGAAGGAGTGGAGAAACAGGGTCCGAGAAATCGAGGATTGCATC GATTTATTCATGCGCAAATTCAATCATGGGGATGTGGATGCCAACTTTGTCCGCAGGACA GCAAAAAAGATAGGAATGTTATGGTCACGTCATGAAATTGCTAGCCAGATCCATCAACTT AAGGATTGTGTTAACGAAGAGAGTGCCCGTCGTTTGAGGTATAGATTTGGTGAAAGCAAT GCCCGCATAGTTGAAATTGATCCTGGACTACCAGCACTCTATGTGGAAGCAGAGAAACTT GTTGGCATCCATGGCCCTATGGAGAAGATCATTGATTTGTTGACAAAACAGGATGGATCC TCACAACAGCTGAAAGTGGTTTCCATTGTGGGCTTTGGGGGCCTTGGCAAGACTACTCTT GCTAACCAAGTACTTAAAAAAATCAAGCATCAGTTTGATTGCACAGCTTTAGTATTTATT TCACGGAGTCCTGACATTAAGAAGATCTTATTTGTTTTGCTTAAAGATATGATCAACAAA AACAATTCTAATGATGAGAAGCACAAAAAAGTTGTTGGGATCAAGGCAGAAAAATCAGAT GATGAGAAACAACTAATCAATAAGCTCAGAGAATACCTAACAAGTAGAAGGTGGGCACAA AAATAATTGGTTCTCTTTCATTTACTTTCCTGTTAAAGTCTTCATCTTAAATTTTTCAAG TCGTTTCCATTTGTTGAGGTCCCTTTTTCCTTTGCTGTACAATTTGATACAAGCCAATTC AAAACCCATGTAAATAGAATCATTACTCATATTTGTAATTAAAGGGTAAACTTGATAATA TAAGACTTTGATGCCCT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)