cluster # 8159

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Oryza sativa
cluster # 8159 cluster # 8159 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8159#0 length = 633 sequences # 4

consensus_8159#1 length = 487 sequences # 1

consensusID : consensus_8159#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 633
fasta sequence

                              [AGGACTAGCCATGGCGAAGAACCGGAACAAGAAGAGCAAGAAGTGCGGCGGCGGCGGGGTCGC-TGCCATGGACACCTCCGAGGGC-GCCCCGGCGGCCTCCACCGCCGTGGGCGCACCAGAACCCATGGATACGTCGGAGGGGAAGC-AGACGTCTTC-AGTATCGGTTGCGCTCACTTCGATTAACAAGAAAATTAAAAAGGGAGTGCAAATTAAAAGGTCTCAAAACGTGAGGAAAATGAAAGCTGTTGCCAGGGCCATTTCAAAAAATGAAAAGGCTG-AGGA-GAAGGTCCT-GAAAGCCAAAAGCAAGAAGTCAAGGGTCC-AATCTGCTAAGTCTCTGTATGACTAAAGGTTCAGTGGGTTTAACCCAATTTTGTGTTCCTATATATCTCCATCCTTCAGAGCAAACCAATCTATGTGTTTTATAATACAAGCTTTGGCCTACAAAATATTGTGATGTGTGGTAATAGTAGAATAGTAGGATT-GTTTGTTTTGTACTATAACGTTCTTTGATATGGATCATCCAATAGCAACCAACCCACTCTACATTTTG-CGTATAATACCAAAAATTCTGTTCCCCTCTATACTATTTTCAGCATTAATGTGTGTTCATTTTGAGCCCTAAAAAAAAAAAAA]

[+] EMBL AU174954             [AGGACTAGCCATGGCGAAGAACCGGAACAAGAAGAGCAAGAAGTGCGGCGGCGGCGGGGTCGCTTGCCATGGACACCTCCGAGGGC GCCCCGGCGGCCTCCACCGCCGTGGGCGCACCAGAACCCATGGATACGTCGGAGGGGAAGC AGACGTCTTC AGTATCGGTTGCGCTCACTTCGATTAACAAGAAAATTAAAAAGGGAGTGCAAATTAAAAGGTCTCAAAACGTGAGGAAAATGAAAGCTGTTGCCAGGGCCATTTCAAAAAATGAAAAGGCTG AGGA GAAGGTCCT GAAAGCCAAAAGCAAGAAGTCAAGGGTCC AATCTGCTAAGTCTCTGTATGACTAAAGGTTCAGTGGGTTTAACCCAATTTTGTGTTCCTATATATCTC                                                                                                                                                                                                                                                      ]
[+] EMBL BI799111             [                     CCCGAACAAGAAGACCAAGAAGTGC GC GC GC GGGTC C CCCCATGAACACCTCCGAGGGCAGCCCC GC GCCTCCACCACCGTGGGCGCACCAGAACCCATGGATACGTCGGAGGGGAACCAAGACGTCTTCAAGTATCGTTTGCGCTCACTTCGATTAACAAGAAAATTAAAAAGGGAGTCCAAATTAAAAGGTCTC AAACGTGAGGAAAATGAAAGCTGTTGCCAGGCCCATTTC AAAAATGAAAAGGCTG AGGA GAAGGTCCT GAAAGCCTAAAGCAAGAAGTCAAGGGTCCAAATCTGCTAAGTCTCTGTATGACTAAAGGTTCAGTGGGTTTAACCCAATTTTGTGTTCCTATATATCTCCATCCTTCAGAGCAAACCAATCTATGTGTTTTATAATACAAGCTTTGGCCTACAAAATATTGTGATGTGTGGTAATAGTAGAATAGTAGGATT GTTTGTTTTGTACTATAACGTTCTTTGATATGGATCATCCAATAGCAACCAACCCACTCTACATTTTG CGTATAATACCAAAAA                                                                   ]
[+] EMBL OS0287A              [                      CGGAACAAGAAGAGCAAGAAGTGCGGCGGCGGCGGGGTCGC TGCCATGGACACCTCCGAGGGC GCCCCGGCGGCCTCCACCGCCGTGGGCGCACCAGAACCCATGGATACGTCGGAGGGGAAGC AGACGTCTTC AGTATCGGTTGCGCTCACTTCGATTAACAAGAAAATTAAAAAGGGAGTGCAAATTAAAAGGTCTCAAAACGTGAGGAAAATGAAAGCTGTTGCCAGGGCCATTTCAAAAAATGAAAAGGCTGTAGGAGGAAGGTCCTNNAAAGCCAAANGCAAGA                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU174953             [                                                                                                                                                                                     GATTAACAAGAAAATTAAAAAGGGAGTGCAAATTAAAAGGTCTCAAAACGTGAGGAAAATGAAAGCTGTTGCCAGGGCCATTTCAAAAAATGAAAAGGCTG AGGA GAAGGTCCT GAAAGCCAAAAGCAAGAAGTCAAGGGTCC AATCTGCTAAGTCTCTGTATGACTAAAGGTTCAGTGGGTTTAACCCAATTTTGTGTTCCTATATATCTCCATCCTTCAGAGCAACCAAATCTATGTGTTTTATAATACAAGCTTT GCCTAC AAATATTGTGATGTGTGGTAATAGTAGAATAGTAGGATTGGTTGGTTTTGTACTATCACGTTCTTTGATATTGATCATCCAATAGCAACCAACCCACTCTACATTTTGTCGTATAATAGCAAATATTCTGTTCCCCTCTATACTATTTTCAGCATTAATGTGTGTTCATTTTGAGCCCTAAAAAAAAAAAAA]




>consensus_8159#0
AGGACTAGCCATGGCGAAGAACCGGAACAAGAAGAGCAAGAAGTGCGGCGGCGGCGGGGT
CGCTGCCATGGACACCTCCGAGGGCGCCCCGGCGGCCTCCACCGCCGTGGGCGCACCAGA
ACCCATGGATACGTCGGAGGGGAAGCAGACGTCTTCAGTATCGGTTGCGCTCACTTCGAT
TAACAAGAAAATTAAAAAGGGAGTGCAAATTAAAAGGTCTCAAAACGTGAGGAAAATGAA
AGCTGTTGCCAGGGCCATTTCAAAAAATGAAAAGGCTGAGGAGAAGGTCCTGAAAGCCAA
AAGCAAGAAGTCAAGGGTCCAATCTGCTAAGTCTCTGTATGACTAAAGGTTCAGTGGGTT
TAACCCAATTTTGTGTTCCTATATATCTCCATCCTTCAGAGCAAACCAATCTATGTGTTT
TATAATACAAGCTTTGGCCTACAAAATATTGTGATGTGTGGTAATAGTAGAATAGTAGGA
TTGTTTGTTTTGTACTATAACGTTCTTTGATATGGATCATCCAATAGCAACCAACCCACT
CTACATTTTGCGTATAATACCAAAAATTCTGTTCCCCTCTATACTATTTTCAGCATTAAT
GTGTGTTCATTTTGAGCCCTAAAAAAAAAAAAA

consensusID : consensus_8159#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence

                              [CCAGAACCCATGGATTAACTGCGGATGGGGTAACAAGACGTCTTCAAGTATCGGTTGGCGCTCACTGTCGAATTAACAAGAAATGATTAAAGGGAGTGCAATAGTGTAAAGAGGTCTCAAAACGTGAGGTAAAAATGAAAGCATGTTGCCCAGGGCCCATTGTGCAAAAAATAGGAATAAGGCCTGAGGAAGAAAGTCCCTGAAAAGCCATGTAAGCCAAGTAAGTCAAAGGGTCCAAATCTGGCGAAGTCTCTGGTATGACCTAAAGGTTCAGTGGGGTTTTAACACCAAATTTGGTGTTCCTATATATCTCCATCCTTCCAGAGCATACCAAAATCGTATGTGGTTTTGATAATACAAGCTGTTGCCATACAAAATATTTGATGTTGGTAATAGTAGAATAGTAGGATTGTTGTTTTGTACTATAACGGTTCTTGGATATGGATCATCCAATAGCAACCAACCCACTCTACATTTGGCGTAAAAA]

[+] EMBL BI797164             [CCAGAACCCATGGATTAACTGCGGATGGGGTAACAAGACGTCTTCAAGTATCGGTTGGCGCTCACTGTCGAATTAACAAGAAATGATTAAAGGGAGTGCAATAGTGTAAAGAGGTCTCAAAACGTGAGGTAAAAATGAAAGCATGTTGCCCAGGGCCCATTGTGCAAAAAATAGGAATAAGGCCTGAGGAAGAAAGTCCCTGAAAAGCCATGTAAGCCAAGTAAGTCAAAGGGTCCAAATCTGGCGAAGTCTCTGGTATGACCTAAAGGTTCAGTGGGGTTTTAACACCAAATTTGGTGTTCCTATATATCTCCATCCTTCCAGAGCATACCAAAATCGTATGTGGTTTTGATAATACAAGCTGTTGCCATACAAAATATTTGATGTTGGTAATAGTAGAATAGTAGGATTGTTGTTTTGTACTATAACGGTTCTTGGATATGGATCATCCAATAGCAACCAACCCACTCTACATTTGGCGTAAAAA]




>consensus_8159#1
CCAGAACCCATGGATTAACTGCGGATGGGGTAACAAGACGTCTTCAAGTATCGGTTGGCG
CTCACTGTCGAATTAACAAGAAATGATTAAAGGGAGTGCAATAGTGTAAAGAGGTCTCAA
AACGTGAGGTAAAAATGAAAGCATGTTGCCCAGGGCCCATTGTGCAAAAAATAGGAATAA
GGCCTGAGGAAGAAAGTCCCTGAAAAGCCATGTAAGCCAAGTAAGTCAAAGGGTCCAAAT
CTGGCGAAGTCTCTGGTATGACCTAAAGGTTCAGTGGGGTTTTAACACCAAATTTGGTGT
TCCTATATATCTCCATCCTTCCAGAGCATACCAAAATCGTATGTGGTTTTGATAATACAA
GCTGTTGCCATACAAAATATTTGATGTTGGTAATAGTAGAATAGTAGGATTGTTGTTTTG
TACTATAACGGTTCTTGGATATGGATCATCCAATAGCAACCAACCCACTCTACATTTGGC
GTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8159#0      AGGACTAGCCATGGCGAAGAACCGGAACAAGAAGAGCAAGAAGTGCGGCGGCGGCGGGGT 60
consensus_8159#1      ------------------------------------------------------------
                                                                                  

consensus_8159#0      CGCTGCCATGGACACCTCCGAGGGCGCCCCGGCGGCCTCCACCGCCGTGGGCGCACCAGA 120
consensus_8159#1      -------------------------------------------------------CCAGA 5
                                                                             *****

consensus_8159#0      ACCCATGGAT--ACGTCGGAGGGG--AAGCAGACGTCTTCA-GTATCGGTTG-CGCTCAC 174
consensus_8159#1      ACCCATGGATTAACTGCGGATGGGGTAACAAGACGTCTTCAAGTATCGGTTGGCGCTCAC 65
                      **********  **  **** ***  **  *********** ********** *******

consensus_8159#0      T-TCGA-TTAACAAGAAAATTAAAAAGGGAGTGCAA----ATTAAAAGGTCTCAAAACGT 228
consensus_8159#1      TGTCGAATTAACAAGAAATGATTAAAGGGAGTGCAATAGTGTAAAGAGGTCTCAAAACGT 125
                      * **** ***********     *************     * ** **************

consensus_8159#0      GAGG--AAAATGAAAGC-TGTTGCC-AGGGCCATTT---CAAAAAATGAAAA----GGCT 277
consensus_8159#1      GAGGTAAAAATGAAAGCATGTTGCCCAGGGCCCATTGTGCAAAAAATAGGAATAAGGCCT 185
                      ****  *********** ******* ******  **   ********   **    * **

consensus_8159#0      GAGGA-GAAGGTCCT--GAAAGCCA---AAAGCAAG-AAGTCAA-GGGTCCAA-TCTG-C 327
consensus_8159#1      GAGGAAGAAAGTCCCTGAAAAGCCATGTAAGCCAAGTAAGTCAAAGGGTCCAAATCTGGC 245
                      ***** *** ****    *******   **  **** ******* ******** **** *

consensus_8159#0      TAAGTCTCTG-TATGAC-TAAAGGTTCAGTGGG--TTTAACCC--AATTTTGTGTTCCTA 381
consensus_8159#1      GAAGTCTCTGGTATGACCTAAAGGTTCAGTGGGGTTTTAACACCAAATTTGGTGTTCCTA 305
                       ********* ****** ***************  ****** *  ***** *********

consensus_8159#0      TATATCTCCATCCTTC-AGAGCAAACCAA---TCTATGTGTTTT--ATAATACAAGCTTT 435
consensus_8159#1      TATATCTCCATCCTTCCAGAGCATACCAAAATCGTATGTGGTTTTGATAATACAAGCTGT 365
                      **************** ****** *****     ****** ***  ************ *

consensus_8159#0      GGCC-TACAAAATATTGTGATGTGTGGTAATAGTAGAATAGTAGGATTGTTTGTTTTGTA 494
consensus_8159#1      TGCCATACAAAATATT-TGATGT-TGGTAATAGTAGAATAGTAGGATTGTT-GTTTTGTA 422
                       *** *********** ****** *************************** ********

consensus_8159#0      CTATAACG-TTCTTTGATATGGATCATCCAATAGCAACCAACCCACTCTACATTTTGCGT 553
consensus_8159#1      CTATAACGGTTCTTGGATATGGATCATCCAATAGCAACCAACCCACTCTACATTTGGCGT 482
                      ******** ***** **************************************** ****

consensus_8159#0      ATAATACCAAAAATTCTGTTCCCCTCTATACTATTTTCAGCATTAATGTGTGTTCATTTT 613
consensus_8159#1      AAAAA------------------------------------------------------- 487
                      * **                                                        

consensus_8159#0      GAGCCCTAAAAAAAAAAAAA 633
consensus_8159#1      --------------------