cluster # 8162

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Oryza sativa
cluster # 8162 cluster # 8162 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8162#0 length = 967 sequences # 4

consensus_8162#1 length = 494 sequences # 1

consensusID : consensus_8162#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 967
fasta sequence

                              [CCCAAAGCAACCG--ACACACACACACAAGCTACAAACATGGCTGCTTCTTCTTGGTGGGTTGTAGCGGCGTGCGTGGTGTTGGCGGCGGCGGCGGCGGCCGACCCGAGGGACGGGTTCACGGCGGTGAGCCTGGGCGATGGCAACTTCCAGCTGCAGTGGCCGTACGACGTGGAGAGCAGCTCGAGGTACAGCTTCGACGGCACGGTGAGGCGGCTGTGGGTCTTCTCCGACGACAAGCCCTTCAAGCCGCAGAGCGGAACCAACCCAAGGACGGAGATCAGGATGACGGGTTATGACTACTCGTCAGGGGTGTGGCAATTCGAGGGCACCGGTTACGTCCCCTCCGGCACCACCGGCGTGTCCATCATGCAGGTGTTCGGTGGCGGGACCGCCACCACCCTCATGCTCCACGTCTATGGCGGCGACCTTTGGTACTACCACCAGCAGGTGGTGGAGACCAACATCTACGACCGCTGGTTCCGCCTCAATGTCATCCACGACGTCGCCGCCTCCCAGCTCACCGTCTTCATTGATGGCCGGGAGAGGCTCCGCGTCGCCGGCAAGGGTGGCGACTCGCACTACTTCAAGTTCGGCGTGTACATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCAACAAGACATAGTAACCTAGTATCGAAATTAGACATAAATTGATGTTATGAATAAATCTATCTAGATTCAATAATATTAGATTGTGTCAAATCTATCGGGTATAAAGTTATTATATTTTAAGATGGAGATAGTACTTGGAGTAAATTATAACTGGACATTGTGTAAACACGCATGTCTCTACTTGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTCAATTTTGTTTCATCTATATATTGAGTGTACGTATATATGATATCTTTGCATTAAGAAAAGTACTTAATT]

[+] EMBL AK059809             [CCCAAAGCAACCG  ACACACACACACAAGCTACAAACATGGCTGCTTCTTCTTGGTGGGTTGTAGCGGCGTGCGTGGTGTTGGCGGCGGCGGCGGCGGCCGACCCGAGGGACGGGTTCACGGCGGTGAGCCTGGGCGATGGCAACTTCCAGCTGCAGTGGCCGTACGACGTGGAGAGCAGCTCGAGGTACAGCTTCGACGGCACGGTGAGGCGGCTGTGGGTCTTCTCCGACGACAAGCCCTTCAAGCCGCAGAGCGGAACCAACCCAAGGACGGAGATCAGGATGACGGGTTATGACTACTCGTCAGGGGTGTGGCAATTCGAGGGCACCGGTTACGTCCCCTCCGGCACCACCGGCGTGTCCATCATGCAGGTGTTCGGTGGCGGGACCGCCACCACCCTCATGCTCCACGTCTATGGCGGCGACCTTTGGTACTACCACCAGCAGGTGGTGGAGACCAACATCTACGACCGCTGGTTCCGCCTCAATGTCATCCACGACGTCGCCGCCTCCCAGCTCACCGTCTTCATTGATGGCCGGGAGAGGCTCCGCGTCGCCGGCAAGGGTGGCGACTCGCACTACTTCAAGTTCGGCGTGTACATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCAACAAGACATAGTAACCTAGTATCGAAATTAGACATAAATTGATGTTATGAATAAATCTATCTAGATTCAATAATATTAGATTGTGTCAAATCTATCGGGTATAAAGTTATTATATTTTAAGATGGAGATAGTACTTGGAGTAAATTATAACTGGACATTGTGTAAACACGCATGTCTCTACTTGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTCAATTTTGTTTCATCTATATATTGAGTGTACGTATATATGATATCTTTGCATTAAGAAAAGTACTTAATT]
[+] EMBL AK104097             [CCCAAAGCAACCGACACACACACACACAAGCTACAAACATGGCTGCTTCTTCTTGGTGGGTTGTAGCGGCGTGCGTGGTGTTGGCGGCGGCGGCGGCGGCCGACCCGAGGGACGGGTTCACGGCGGTGAGCCTGGGCGATGGCAACTTCCAGCTGCAGTGGCCGTACGACGTGGAGAGCAGCTCGAGGTACAGCTTCGACGGCACGGTGAGGCGGCTGTGGGTCTTCTCCGACGACAAGCCCTTCAAGCCGCAGAGCGGAACCAACCCAAGGACGGAGATCAGGATGACGGGTTATGACTACTCGTCAGGGGTGTGGCAATTCGAGGGCACCGGTTACGTCCCCTCCGGCACCACCGGCGTGTCCATCATGCAGGTGTTCGGTGGCGGGACCGCCACCACCCTCATGCTCCACGTCTATGGCGGCGACCTTTGGTACTACCACCAGCAGGTGGTGGAGACCAACATCTACGACCGCTGGTTCCGCCTCAATGTCATCCACGACGTCGCCGCCTCCCAGCTCACCGTCTTCATTGATGGCCGGGAGAGGCTCCGCGTCGCCGGCAAGGGTGGCGACTCGCACTACTTCAAGTTCGGCGTGTACATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCAACAAGACATAGTAACCTAGTATCGAAATTAGACATAAATTGATGTTATGAATAAATCTATCTAGATTCAATAATATTAGATTGTGTCAAATCTATCGGGTATAAAGTTATTATATTTTAAGATGGAGATAGTACTTGGAGTAAATTATAACTGGACATTGTGTAAACACGCATGTCTCTACTTGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTCAATTTTGTTTCATCTATATATTGAGTGTACGTATATATGATA                           ]
[+] EMBL CB648568             [                   ACACACCCCTTCTACAAACATGGCTGCTTCTTCTTGGTGGGTTGTAGCGGCGTGCGTGGTGTTGGCGGCGGCGGCGGCGGCCGACCCGAGGGACGGGTTCACGGCGGTGAGCCTGGGCGATGGCAACTTCCAGCTGCAGTGGCCGTACGACGTGGAGAGCAGCTCGAGGTACAGCTTCGACGGCACGGTGAGGCGGCTGTGGGTCTTCTCCGACGACAAGCCCTTCAAGCCGCAGAGCGGAACCAACCCAAGGACGGAGATCAGGATGACGGGTTATGACTACTCGTCAGGGGTGTGGCAATTCTAGGGCACCGGTTACGTCCCCTCCGGCACCACCGGCGTGTCCATCATGCAGGTGTTCGGTGGCGGGACCGCCACCACCCTCATGCTCCACGTCTATGGCGGCGACCTTTGGTACTACCACCAGCAGGTGGTGGAGACCAACATCTACGACCGCTGGTTCCGCCTCAATGTCATCCACGACGTCGCCGCCTCCCAGCTCACCGTCTTCATTGATGGCCGGGAGAGGCTCCGCGTCGCCGGCAAGGGTGGCGACTCGCACTACTTCAAGTTCGGCGTGTACATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCAACAAGACATAGTAACCTAGTATCGAAATTAGACATAAATTGATGTTATGAATAAATCTATCTAGATTCAATAATAT                                                                                                                                                                                                                                         ]
[-] EMBL CB648569             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                atGAACCCGTCCAACCGCATGGAGTATTGATGGAAAGTCATCAGCATCCTCAACAAGACATAGTAACCTTGTATCGAAATTAGACATAAATTGATGTTATGAATAAATCTATCTTGATTCAATAATATTAGATTGTGTTAAATCTATTGGGTATAAAGTTATTATATTTTAAGATGGAGATACTATTTGGCGTAAATTATAACTGGACATTGTGTAAACACGCATGTCTCTGCTTGTGTTGTTACATGCGTGGAGTACTATGCA                                                                                                 ]




>consensus_8162#0
CCCAAAGCAACCGACACACACACACAAGCTACAAACATGGCTGCTTCTTCTTGGTGGGTT
GTAGCGGCGTGCGTGGTGTTGGCGGCGGCGGCGGCGGCCGACCCGAGGGACGGGTTCACG
GCGGTGAGCCTGGGCGATGGCAACTTCCAGCTGCAGTGGCCGTACGACGTGGAGAGCAGC
TCGAGGTACAGCTTCGACGGCACGGTGAGGCGGCTGTGGGTCTTCTCCGACGACAAGCCC
TTCAAGCCGCAGAGCGGAACCAACCCAAGGACGGAGATCAGGATGACGGGTTATGACTAC
TCGTCAGGGGTGTGGCAATTCGAGGGCACCGGTTACGTCCCCTCCGGCACCACCGGCGTG
TCCATCATGCAGGTGTTCGGTGGCGGGACCGCCACCACCCTCATGCTCCACGTCTATGGC
GGCGACCTTTGGTACTACCACCAGCAGGTGGTGGAGACCAACATCTACGACCGCTGGTTC
CGCCTCAATGTCATCCACGACGTCGCCGCCTCCCAGCTCACCGTCTTCATTGATGGCCGG
GAGAGGCTCCGCGTCGCCGGCAAGGGTGGCGACTCGCACTACTTCAAGTTCGGCGTGTAC
ATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCAAC
AAGACATAGTAACCTAGTATCGAAATTAGACATAAATTGATGTTATGAATAAATCTATCT
AGATTCAATAATATTAGATTGTGTCAAATCTATCGGGTATAAAGTTATTATATTTTAAGA
TGGAGATAGTACTTGGAGTAAATTATAACTGGACATTGTGTAAACACGCATGTCTCTACT
TGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTCAA
TTTTGTTTCATCTATATATTGAGTGTACGTATATATGATATCTTTGCATTAAGAAAAGTA
CTTAATT

consensusID : consensus_8162#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 494
fasta sequence

                              [CATTTGATGCCCGGGGAGAGGCTCCGCTTCCCGCAAGGGTGCGACTCGCACTACTTCAAGTTCGGCGTGTACATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCACAAGACATAGTAACCTAGTATTGAAATTAGACATAAATTGATGTTATGAATAAATCTATCTAGATTTAATAATATTAGATTATGTCAAATCCATCGGGTATAAAGTTATTATATTTTAAGATGGAGATAGTACTTGGAGTAAATTATAACTGGACATTTGTGTAAACACGCATGTCTCTACTTGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTCAATTATGTATGGTTACGTATATATGATATCTTTGCATTAAGAAAAGTACTTAATTATGTGATAATACATTTATGTGTACTATCTATTGTTAAGAATATACTCCCTATGTTCCTGAAAAAAAAAA]

[+] EMBL BI812502             [CATTTGATGCCCGGGGAGAGGCTCCGCTTCCCGCAAGGGTGCGACTCGCACTACTTCAAGTTCGGCGTGTACATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCACAAGACATAGTAACCTAGTATTGAAATTAGACATAAATTGATGTTATGAATAAATCTATCTAGATTTAATAATATTAGATTATGTCAAATCCATCGGGTATAAAGTTATTATATTTTAAGATGGAGATAGTACTTGGAGTAAATTATAACTGGACATTTGTGTAAACACGCATGTCTCTACTTGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTCAATTATGTATGGTTACGTATATATGATATCTTTGCATTAAGAAAAGTACTTAATTATGTGATAATACATTTATGTGTACTATCTATTGTTAAGAATATACTCCCTATGTTCCTGAAAAAAAAAA]




>consensus_8162#1
CATTTGATGCCCGGGGAGAGGCTCCGCTTCCCGCAAGGGTGCGACTCGCACTACTTCAAG
TTCGGCGTGTACATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATC
AGCATCCTCACAAGACATAGTAACCTAGTATTGAAATTAGACATAAATTGATGTTATGAA
TAAATCTATCTAGATTTAATAATATTAGATTATGTCAAATCCATCGGGTATAAAGTTATT
ATATTTTAAGATGGAGATAGTACTTGGAGTAAATTATAACTGGACATTTGTGTAAACACG
CATGTCTCTACTTGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGT
TGTGTATGTCAATTATGTATGGTTACGTATATATGATATCTTTGCATTAAGAAAAGTACT
TAATTATGTGATAATACATTTATGTGTACTATCTATTGTTAAGAATATACTCCCTATGTT
CCTGAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8162#0      CCCAAAGCAACCGACACACACACACAAGCTACAAACATGGCTGCTTCTTCTTGGTGGGTT 60
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      GTAGCGGCGTGCGTGGTGTTGGCGGCGGCGGCGGCGGCCGACCCGAGGGACGGGTTCACG 120
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      GCGGTGAGCCTGGGCGATGGCAACTTCCAGCTGCAGTGGCCGTACGACGTGGAGAGCAGC 180
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      TCGAGGTACAGCTTCGACGGCACGGTGAGGCGGCTGTGGGTCTTCTCCGACGACAAGCCC 240
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      TTCAAGCCGCAGAGCGGAACCAACCCAAGGACGGAGATCAGGATGACGGGTTATGACTAC 300
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      TCGTCAGGGGTGTGGCAATTCGAGGGCACCGGTTACGTCCCCTCCGGCACCACCGGCGTG 360
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      TCCATCATGCAGGTGTTCGGTGGCGGGACCGCCACCACCCTCATGCTCCACGTCTATGGC 420
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      GGCGACCTTTGGTACTACCACCAGCAGGTGGTGGAGACCAACATCTACGACCGCTGGTTC 480
consensus_8162#1      ------------------------------------------------------------
                                                                                  

consensus_8162#0      CGCCTCAATGTCATCCACGACGTCGCCGCCTCCCAGCTCACCGTCTTCATTGATGGCCGG 540
consensus_8162#1      ----------------------------------------------CATTTGATGCCCGG 14
                                                                       ****** ****

consensus_8162#0      G-AGAGGCTCCGCGTCGCCGGCAAGGGTGGCGACTCGCACTACTTCAAGTTCGGCGTGTA 599
consensus_8162#1      GGAGAGGCTCCGCTT--CCCGCAAGGGTG-CGACTCGCACTACTTCAAGTTCGGCGTGTA 71
                      * *********** *  ** ********* ******************************

consensus_8162#0      CATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCAA 659
consensus_8162#1      CATGCAGACGAACCCGTCCAACCGCATGGAGTCTCGCTGGAAAGGCATCAGCATCCTCA- 130
                      *********************************************************** 

consensus_8162#0      CAAGACATAGTAACCTAGTATCGAAATTAGACATAAATTGATGTTATGAATAAATCTATC 719
consensus_8162#1      CAAGACATAGTAACCTAGTATTGAAATTAGACATAAATTGATGTTATGAATAAATCTATC 190
                      ********************* **************************************

consensus_8162#0      TAGATTCAATAATATTAGATTGTGTCAAATCTATCGGGTATAAAGTTATTATATTTTAAG 779
consensus_8162#1      TAGATTTAATAATATTAGATTATGTCAAATCCATCGGGTATAAAGTTATTATATTTTAAG 250
                      ****** ************** ********* ****************************

consensus_8162#0      ATGGAGATAGTACTTGGAGTAAATTATAACTGGACATT-GTGTAAACACGCATGTCTCTA 838
consensus_8162#1      ATGGAGATAGTACTTGGAGTAAATTATAACTGGACATTTGTGTAAACACGCATGTCTCTA 310
                      ************************************** *********************

consensus_8162#0      CTTGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTC 898
consensus_8162#1      CTTGTGTTCTTACATGCGTGGAGTACTATGCACATGCCTATATGTATGGTTGTGTATGTC 370
                      ************************************************************

consensus_8162#0      AATTTTGTTTCATCTATATATTGAGTGTACGTATATATGATATCTTTGCATTAAGAAAAG 958
consensus_8162#1      AATTATGTATGGT--------------TACGTATATATGATATCTTTGCATTAAGAAAAG 416
                      **** *** *  *              *********************************

consensus_8162#0      TACTTAATT--------------------------------------------------- 967
consensus_8162#1      TACTTAATTATGTGATAATACATTTATGTGTACTATCTATTGTTAAGAATATACTCCCTA 476
                      *********                                                   

consensus_8162#0      ------------------
consensus_8162#1      TGTTCCTGAAAAAAAAAA 494