|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1347 fasta sequence
[TAGTAAAGCGAAAGCGAACAAAAAGGGGAAAAAAAAAAGAAAAACAAGAGCGCTGTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTGGAGTCGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGAGCAGGCAACTCGAAGAGC-TCACTGATAAGATGCGGGATTGCAAGAGGCTTATCAAGGACTTTGAGCGAGTTGTCAAAGATATGGCAGGAAGTACCGATCCTGAGACTGCTAGGATGCTTCATGATAGGAAACAGTCAATGATCAAAGAATTGAACTCCTATGTTGCTTTGAAGAAACAATATGCAAGTGAAAATAAGCGAGTTGATCTTTTTGATGGCCCAAGTGTTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAAATATGACAAACCAACAGTTAATGGATCAAGGAAACCAACTAATGGATGAGACTGATCAAGCTATTGCAAGATCTAAACAGACCGTCCAAGAGACCATCAATGTAGGTACAGAAACTGCAGCTGCTCTCAAATCACAGACAGAGCAAATGAGCAGAATTGTTAATGAGCTGGATTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCATACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTACTACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTACTGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGTTTGCTTGTAAGAACTGTATTCTGTGAACATTCACATATGTACACGAGCATATCAATCTTTTTTAAGAGTGACAGCAGCGTATGGATCATCCAATAATACAGCGTTTT]
[+] EMBL AK068956 [TAGTAAAGCGAAAGCGAACAAAAAGGGGAAAAAAAAAAGAAAAACAAGAGCGCTGTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTGGAGTCGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGAGCAGGCAACTCGAAGAGC TCACTGATAAGATGCGGGATTGCAAGAGGCTTATCAAGGACTTTGAGCGAGTTGTCAAAGATATGGCAGGAAGTACCGATCCTGAGACTGCTAGGATGCTTCATGATAGGAAACAGTCAATGATCAAAGAATTGAACTCCTATGTTGCTTTGAAGAAACAATATGCAAGTGAAAATAAGCGAGTTGATCTTTTTGATGGCCCAAGTGTTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAAATATGACAAACCAACAGTTAATGGATCAAGGAAACCAACTAATGGATGAGACTGATCAAGCTATTGCAAGATCTAAACAGACCGTCCAAGAGACCATCAATGTAGGTACAGAAACTGCAGCTGCTCTCAAATCACAGACAGAGCAAATGAGCAGAATTGTTAATGAGCTGGATTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATT GGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCATACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTACTACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTACTGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGTTTGCTTGTAAGAACTGTATTCTGTGAACATTCACATATGTACACGAGCATATCAATCTTTTTTAAGAGTGACAGCAGCGTATGGATCATCCAATAATACAGCGTTTT]
[+] EMBL AK058743 [ AAAAAAAAAAGAAAAACAAGAGCGCTGTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTGGAGTCGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGAGCAGGCAACTCGAAGAGC TCACTGATAAGATGCGGGATTGCAAGAGGCTTATCAAGGACTTTGAGCGAGTTGTCAAAGATATGGCAGGAAGTACCGATCCTGAGACTGCTAGGATGCTTCATGATAGGAAACAGTCAATGATCAAAGAATTGAACTCCTATGTTGCTTTGAAGAAACAATATGCAAGTGAAAATAAGCGAGTTGATCTTTTTGATGGCCCAAGTGTTGAAGATGGCTTTGGTGAAGAAAATGTCCTGTTAGCATCAAATATGACAAACCAACAGTTAATGGATCAAGGAAACCAACTAATGGATGAGACTGATCAAGCTATTGCAAGATCTAAACAGACCGTCCAAGAGACCATCAATGTAGGTACAGAAACTGCAGCTGCTCTCAAATCACAGACAGAGCAAATGAGCAGAATTGTTAATGAGCTGGATTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGTAGGCAGGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCATACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTACTACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTACTGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGTTTGCTTGTAAGAACTGTATTCTGTGAACATTCACATATGTACACGAGCATATCAATCTTTTTTAAGAGTGACAGCAG ]
[+] EMBL OSS4258A [ GAAAAACAAGAGCGCTGTGTNGGTG NCACCGCCGGACCACCACCGCGACCCCTCGATCCNNGCGATCCCACAGCATTGGTCGGTCCCCGTNGATCCGGCCGCCGNNGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGNAGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTNGAGTCGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTNGATAAGATCAAGGATGCCAATCGACGGAGCAGGCANCTCGAAG GCTTCACTGATAAGATGCGGNCTT CAAGAAGCTTATCAAGG CTTTNAGCGAGTTGTCAAAGATATG ]
[+] EMBL D42744 [ aTTCCCCAATAAAAAGCCATCACAAATGGTGAAAGAAA TGGTAGNCCGGTTGCAACTGAACGCGCCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTCATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCTGGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCATACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTACTACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTACTGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGT ]
consensusID : consensus_8166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 388 fasta sequence
[GNCGCNTNGTTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGANGGGAGATGGATTTGGAGTCGGTCAACCCGGAGCTCNCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGACAGGCACTCGAAGACTCACTGATAA]
[+] EMBL AU029618 [GNCGCNTNGTTGTCGGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGTCGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTGGTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTGTTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGANGGGAGATGGATTTGGAGTCGGTCAACCCGGAGCTCNCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTGCAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGACAGGCACTCGAAGACTCACTGATAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8166#0 TAGTAAAGCGAAAGCGAACAAAAAGGGGAAAAAAAAAAGAAAAACAAGAGCGCTGT-GTC 59
consensus_8166#1 ----------------------------------------------GNCGCNTNGTTGTC 14
** ** ***
consensus_8166#0 GGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGT 119
consensus_8166#1 GGAGACCACCGCCGGACCACCACCGCGACCCCTCGATCCCGGCGATCCCACAGCATTGGT 74
************************************************************
consensus_8166#0 CGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTG 179
consensus_8166#1 CGGTCCCCGTCGATCCGGCCGCCGTGGGGTTTGGTCTGGTACTCTCTGGTGGTGGTGGTG 134
************************************************************
consensus_8166#0 GTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTG 239
consensus_8166#1 GTGGTCGCCGTCGTGAACGATTCCTTTTTCTGCTTGGATTTTTTTTGTTGCTTTTGGTTG 194
************************************************************
consensus_8166#0 TTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGAGGGGAGATGGATTTGGAG 299
consensus_8166#1 TTGTGATCCCTGTGGGGCTCGGGTTCCGGCCGGTGTAGGGGANGGGAGATGGATTTGGAG 254
****************************************** *****************
consensus_8166#0 TCGGTCAACCCGGAGCTCGCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTG 359
consensus_8166#1 TCGGTCAACCCGGAGCTCNCCGAGATCGACGGCCAGATCGGCGACATCCTCCGCGCATTG 314
****************** *****************************************
consensus_8166#0 CAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGAGCAGGCAACTC 419
consensus_8166#1 CAAAATGGGTTCCAGAAGCTGGATAAGATCAAGGATGCCAATCGACGGA-CAGGCA-CTC 372
************************************************* ****** ***
consensus_8166#0 GAAGAGCTCACTGATAAGATGCGGGATTGCAAGAGGCTTATCAAGGACTTTGAGCGAGTT 479
consensus_8166#1 GAAGA-CTCACTGATAA------------------------------------------- 388
***** ***********
consensus_8166#0 GTCAAAGATATGGCAGGAAGTACCGATCCTGAGACTGCTAGGATGCTTCATGATAGGAAA 539
consensus_8166#1 ------------------------------------------------------------
consensus_8166#0 CAGTCAATGATCAAAGAATTGAACTCCTATGTTGCTTTGAAGAAACAATATGCAAGTGAA 599
consensus_8166#1 ------------------------------------------------------------
consensus_8166#0 AATAAGCGAGTTGATCTTTTTGATGGCCCAAGTGTTGAAGATGGCTTTGGTGAAGAAAAT 659
consensus_8166#1 ------------------------------------------------------------
consensus_8166#0 GTCCTGTTAGCATCAAATATGACAAACCAACAGTTAATGGATCAAGGAAACCAACTAATG 719
consensus_8166#1 ------------------------------------------------------------
consensus_8166#0 GATGAGACTGATCAAGCTATTGCAAGATCTAAACAGACCGTCCAAGAGACCATCAATGTA 779
consensus_8166#1 ------------------------------------------------------------
consensus_8166#0 GGTACAGAAACTGCAGCTGCTCTCAAATCACAGACAGAGCAAATGAGCAGAATTGTTAAT 839
consensus_8166#1 ------------------------------------------------------------
consensus_8166#0 GAGCTGGATTCCATTCATTTCTCCATTAAAAAGGCATCACAAATGGTGAAAGAAATTGGT 899
consensus_8166#1 ------------------------------------------------------------
consensus_8166#0 AGGCAGGTTGCAACTGATCGCTGCATCATGGCCTTGCTTTTTCTCATTGTTGCTGGAGTC 959
consensus_8166#1 ------------------------------------------------------------
consensus_8166#0 ATAGCAATAATAGTCGTTAAGATTGTAAACCCACAGAACAAGACTATCCGAGACATTCCT 1019
consensus_8166#1 ------------------------------------------------------------
consensus_8166#0 GGTCTCGCTCCACCAGTTAGCAGAAGGCTATTGAGTATTGTAGAAGACATCTGAACTTCA 1079
consensus_8166#1 ------------------------------------------------------------
consensus_8166#0 TACATGTGAACAAATCAACCAAGAGCAGCTTGTGCTGTTTAACTCGAAGGTCGCAACTAC 1139
consensus_8166#1 ------------------------------------------------------------
consensus_8166#0 TACTTGAACATGATGCACAGTGTTGTAATACTATACCCATGGGATCCGTGTGCGAGGTAC 1199
consensus_8166#1 ------------------------------------------------------------
consensus_8166#0 TGTAAAATTGTACGAGTATGTTATGACTCTGACAAGCAGGTTTGCTTGTAAGAACTGTAT 1259
consensus_8166#1 ------------------------------------------------------------
consensus_8166#0 TCTGTGAACATTCACATATGTACACGAGCATATCAATCTTTTTTAAGAGTGACAGCAGCG 1319
consensus_8166#1 ------------------------------------------------------------
consensus_8166#0 TATGGATCATCCAATAATACAGCGTTTT 1347
consensus_8166#1 ----------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||