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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1591 fasta sequence
[ATAAAGAAAAATTCATTCTTCTTCTCCTTCTCCTTCTTCTCTTCTTGGAGGATATTTCTTCCCCCTCCGTCTCCGGCGCCGATCTGCATCCACCCGCCGAGCAGAGACCAGCGCCGCCGCCGCCGCCGTCCGTTCCTCCTGTATCGCGTCCTGAAATTTCTTTTTTTCTGGGATGTCCGACGTTGGAGACGCCCCTGTGCAGCGCCGCTCTTGTTCGAATCCGGCCGGTGGTCTGTAGGATTGGGCGGCTGCGGCGGCGGCGAGATGGACGACGACGCCAGCATGAGCATAAGATGGGGGGGATTCTTCGAGTCGCCGGCGAGGAACCTCGGCCTGCAGCTCATGTCGTCGGTGCCTGCTGAGCGTGACACCAAGCAGCTGCTCTCTGGTAGCCCCTTCCTGCATCATCAGCATCAGCAGCATGTCCCGCACCACCACCATCAGCCCCATCACCCGCGTGACTGCGGCGCCAATGGCAATGCCAATGGTGGTGCTATGCCTCCTCCTCCTGCCACGGAGGCTCCCCCTTCAATGCCGATGAACTTCGCGCGCAGTGACATGTGGATGCACCCGCAACAGCAGCAGCAACATCATCATCCCCGCGAGCACAAGGCTCTTCACAATCTCACTGTTGGCCATGGTTCTTCGCACATTGCGCATCATGACCCAGTGGGCTATGGGATGATCCCCGGTACGCATACCCTGCAGATGATGCAGCAGCAAACAGAGCCTCAACTGCAACCCCCACCACCGCCTCAGCAGCCAAAAGAGGAATGCATTTCCTCGCCATTGATCGAGGAAAATGTACCTGTTATTGATGAGCCACCACCTCCCAAGAAGCGGCAGCAGGGCCGCCAACCCAAGGTACCAAGGGCTAAGAAGCCCAAGAAGTCTGCTGCTCCTCGTGAGGATGGCGCACCACCCAATGCACCAGCACCACGGAGAAGGGGTCCCAGGAAGAATATAGGGATGGTAATTAATGGTATTGATTTGGACCTCTCAAGGATACCAACGCCCATTTGTTCTTGCACGGGCGCACCACAGCAGTGCTATCGGTGGGGTGCAGGTGGTTGGCAATCTGCGTGCTGCACAACCACCATCTCAACGTACCCACTGCCAATGAGTACGAAGCGCCGTGGTGCACGAATCGCAGGCAGGAAGATGAGCCATGGTGCGTTCAAGAAAGTACTTGAGAAGCTTGCTGGTGAAGGTTATAATCTTAATAATCCGATTGACCTGAAGACCTTCTGGGCGAAGCATGGAACAAACAAGTTTGTTACCATAAGGTAAAAGACAATGAAATTCTAAAATTTGTTGGCTTTGTAGGTTGCTCTGCAGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCTAGATTACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTAGGCATGTCCTGTCCCTTTGCAGTAGTTTACATGCCTCATCTGTGACCTGGGTGCTGACCTGTATGGTGGCTATCTGCATGTATCTTTGTCATTATCTTTACAAGTAGCAGTGTAATGCGACAATCTCTAATTTAGGTGGCATGAAAGTTAATCTGTTCAACGTTTCTCATTAAAAAAAAA]
[+] EMBL AK063643 [ATAAAGAAAAATTCATTCTTCTTCTCCTTCTCCTTCTTCTCTTCTTGGAGGATATTTCTTCCCCCTCCGTCTCCGGCGCCGATCTGCATCCACCCGCCGAGCAGAGACCAGCGCCGCCGCCGCCGCCGTCCGTTCCTCCTGTATCGCGTCCTGAAATTTCTTTTTTTCTGGGATGTCCGACGTTGGAGACGCCCCTGTGCAGCGCCGCTCTTGTTCGAATCCGGCCGGTGGTCTGTAGGATTGGGCGGCTGCGGCGGCGGCGAGATGGACGACGACGCCAGCATGAGCATAAGATGGGGGGGATTCTTCGAGTCGCCGGCGAGGAACCTCGGCCTGCAGCTCATGTCGTCGGTGCCTGCTGAGCGTGACACCAAGCAGCTGCTCTCTGGTAGCCCCTTCCTGCATCATCAGCATCAGCAGCATGTCCCGCACCACCACCATCAGCCCCATCACCCGCGTGACTGCGGCGCCAATGGCAATGCCAATGGTGGTGCTATGCCTCCTCCTCCTGCCACGGAGGCTCCCCCTTCAATGCCGATGAACTTCGCGCGCAGTGACATGTGGATGCACCCGCAACAGCAGCAGCAACATCATCATCCCCGCGAGCACAAGGCTCTTCACAATCTCACTGTTGGCCATGGTTCTTCGCACATTGCGCATCATGACCCAGTGGGCTATGGGATGATCCCCGGTACGCATACCCTGCAGATGATGCAGCAGCAAACAGAGCCTCAACTGCAACCCCCACCACCGCCTCAGCAGCCAAAAGAGGAATGCATTTCCTCGCCATTGATCGAGGAAAATGTACCTGTTATTGATGAGCCACCACCTCCCAAGAAGCGGCAGCAGGGCCGCCAACCCAAGGTACCAAGGGCTAAGAAGCCCAAGAAGTCTGCTGCTCCTCGTGAGGATGGCGCACCACCCAATGCACCAGCACCACGGAGAAGGGGTCCCAGGAAGAATATAGGGATGGTAATTAATGGTATTGATTTGGACCTCTCAAGGATACCAACGCCCATTTGTTCTTGCACGGGCGCACCACAGCAGTGCTATCGGTGGGGTGCAGGTGGTTGGCAATCTGCGTGCTGCACAACCACCATCTCAACGTACCCACTGCCAATGAGTACGAAGCGCCGTGGTGCACGAATCGCAGGCAGGAAGATGAGCCATGGTGCGTTCAAGAAAGTACTTGAGAAGCTTGCTGGTGAAGGTTATAATCTTAATAATCCGATTGACCTGAAGACCTTCTGGGCGAAGCATGGAACAAACAAGTTTGTTACCATAAGGTAAAAGACAATGAAATTCTAAAATTTGTTGGCTTTGTAGGTTGCTCTGCAGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCTAGATTACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTAGGCATGTCCTGTCCCTTTGCAGTAGTTTACATGCCTCATCTGTGACCTGGGTGCTGACCTGTATGGTGGCTATCTGCATGTATCTTTGTCATTATCTTTACAAGTAGCAGTGTAATGCGACAATCTCTAATTTAGGTGGCATGAAAGTTAATCTGTTCAAC ]
[+] EMBL CA764737 [ AGAATATAGGGATGGTAATTAATGGTATTGATTTGGACCTCTCAAGGATACCAACGCCCATTTGTTCTTGCACGGGCGCACCACAGCAGTGCTATCGGTGGGGTGCAGGTGGTTGGCAATCTGCGTGCTGCACAACCACCATCTCAACGTACCCACTGCCAATGAGTACGAAGCGCCGTGGTGCACGAATCGCAGGCAGGAAGATGAGCCATGGTGCGTTCAAGAAGGTACTTGAGAAGCTTGCTGGTGAAGGTTATAATCTTAATAATCCGATTGACCTGAAGACCTTCTGGGCGAAGCATGGAACAAACAAGTTTGTTACCATAAGGTAAAAGACAATGAAATTATAAAATTTGTTGGCTTTGTAGGTTGCTCTGCAGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCTAGATTACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTAGCCATGTCCTGTCCCTTCGCAGTAGTATACATGCCTCATCTGTGACCTGGGTGCTGACCTGTATGGTGGCTATCTGCATGTATCTTTATCATTATCTTTACAAGTAGCAGTGTAATGCGACAATCTCTAATTTAGGTGGCATGAAAGTTAATCTGNTC ]
[+] EMBL AU032589 [ GGAACAAACAAGTTTGTTACCATAAGGTAAAAGACAATGAAATTCTAAAATTTGTTGGCTTTGTAGGTTGCTCTGCAGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCTAGATTACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTAGGCATGTCCTGTCCCTTTGCAGTAGTTTACATGCCTCATCTGTGACCTGGGTGCTGACCTGTATGGTGGCTATCTGCATGTATCTTTGTCATTATCTTTACAAGTAGCAGTGTAATGCGACAATCTCTAATTTAGGTGGCATGAAAGTTAATCTGTTCAACGTTTCTCATTAAAAAAAAA]
[+] EMBL OSS10906A [ nGAACAAACAAGTTTGTTACCATAAGGTAAAAGACAATGAAATTCTAAAATTTGTTGGCTTTGTAGGTTGCTCTGCAGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCTAGATTACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTAGGCATGTCCTGTCCCTTTGCAGTAGTTTACATGCCTCATCTGTGACCTGGGTGCTGACCTGTATGGTGGCTATCTGCATGTATCTTTGTCATTATCTTTACAAGTAGCAGTGTAATGCGACAATCTCTAATTTAGGTGGCATGAAAGTTAATCTGTTCAAC ]
consensusID : consensus_8180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[CATAAGCCTGGTTAGGTGAGCCAGAGGGCGAGCCAAGGGGTCCCATGAAGAATATAGGGATGGTGATTAATGGTATTGATTTGGCCCTCTCAAGGATACCAACACCCATTTGTACCTACACAGGCGCACCGCAGCAGTGCTATCGGTGGGGTGCTGGTGGTTGGCAATNTGCGTGNTGCNCAACCACCGTTCTCAACATACCCACTGCCAATGAATACAAAGCGTCATGGTGCACGAATCGCAGGCAGGAAGATGAGCCATGGAGCGTTCAAGAAAGTCCTTGAGAAGCTTGCTGGCAAAGGCTACAATCTTAATAATCCGATTGACCTAAAGACCTTCTGGGCGAAGCATGGAACAAACAAGTTTGTTACCATAATATAAGGTAAGAGACTAAAAGAAATTCTAAATTTGTTGGCTTTGTAGGTTCCTCTGCTGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCTAGATGACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTATCCATGTCCTGTCCCTTTTGCAGTAGTTTACATGCCTCATCTGTGACCTAGGAACTTACCTGTATGGTGGCTATCTGCATGTATCTTTATCATTGTCTTCCCAAGTAGCAATGTAATGCGACAGTCTCTAATTTAAGTTGCAAAGTTAATCATTTGAATGTTAAAAAAAAAAAAAAAAA]
[-] EMBL CA759113 [CATAAGCCTGGTTAGGTGAGCCAGAGGGCGAGCCAAGGGGTCCCATGAAGAATATAGGGATGGTGATTAATGGTATTGATTTGGCCCTCTCAAGGATACCAACACCCATTTGTACCTACACAGGCGCACCGCAGCAGTGCTATCGGTGGGGTGCTGGTGGTTGGCAATNTGCGTGNTGCNCAACCACCGTTCTCAACATACCCACTGCCAATGAATACAAAGCGTCATGGTGCACGAATCGCAGGCAGGAAGATGAGCCATGGAGCGTTCAAGAAAGTCCTTGAGAAGCTTGCTGGCAAAGGCTACAATCTTAATAATCCGATTGACCTAAAGACCTTCTGGGCGAAGCATGGAACAAACAAGTTTGTTACCATAATATAAGGTAAGAGACTAAAAGAAATTCTAAATTTGTTGGCTTTGTAGGTTCCTCTGCTGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCTAGATGACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTATCCATGTCCTGTCCCTTTTGCAGTAGTTTACATGCCTCATCTGTGACCTAGGAACTTACCTGTATGGTGGCTATCTGCATGTATCTTTATCATTGTCTTCCCAAGTAGCAATGTAATGCGACAGTCTCTAATTTAAGTTGCAAAGTTAATCATTTGAATGTTAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8180#0 ATAAAGAAAAATTCATTCTTCTTCTCCTTCTCCTTCTTCTCTTCTTGGAGGATATTTCTT 60
consensus_8180#1 ------------------------------------------------------------
consensus_8180#0 CCCCCTCCGTCTCCGGCGCCGATCTGCATCCACCCGCCGAGCAGAGACCAGCGCCGCCGC 120
consensus_8180#1 ------------------------------------------------------------
consensus_8180#0 CGCCGCCGTCCGTTCCTCCTGTATCGCGTCCTGAAATTTCTTTTTTTCTGGGATGTCCGA 180
consensus_8180#1 ------------------------------------------------------------
consensus_8180#0 CGTTGGAGACGCCCCTGTGCAGCGCCGCTCTTGTTCGAATCCGGCCGGTGGTCTGTAGGA 240
consensus_8180#1 ------------------------------------------------------------
consensus_8180#0 TTGGGCGGCTGCGGCGGCGGCGAGATGGACGACGACGCCAGCATGAGCATAAGATGGGGG 300
consensus_8180#1 ------------------------------------------------------------
consensus_8180#0 GGATTCTTCGAGTCGCCGGCGAGGAACCTCGGCCTGCAGCTCATGTCGTCGGTGCCTGCT 360
consensus_8180#1 ------------------------------------------------------------
consensus_8180#0 GAGCGTGACACCAAGCAGCTGCTCTCTGGTAGCCCCTTCCTGCATCATCAGCATCAGCAG 420
consensus_8180#1 ------------------------------------------------------------
consensus_8180#0 CATGTCCCGCACCACCACCATCAGCCCCATCACCCGCGTGACTGCGGCGCCAATGGCAAT 480
consensus_8180#1 ------------------------------------------------------------
consensus_8180#0 GCCAATGGTGGTGCTATGCCTCCTCCTCCTGCCACGGAGGCTCCCCCTTCAATGCCGATG 540
consensus_8180#1 ------------------------------------------------------------
consensus_8180#0 AACTTCGCGCGCAGTGACATGTGGATGCACCCGCAACAGCAGCAGCAACATCATCATCCC 600
consensus_8180#1 ------------------------------------------------------------
consensus_8180#0 CGCGAGCACAAGGCTCTTCACAATCTCACTGTTGGCCATGGTTCTTCGCACATTGCGCAT 660
consensus_8180#1 ------------------------------------------------------------
consensus_8180#0 CATGACCCAGTGGGCTATGGGATGATCCCCGGTACGCATACCCTGCAGATGATGCAGCAG 720
consensus_8180#1 ------------------------------------------------------------
consensus_8180#0 CAAACAGAGCCTCAACTGCAACCCCCACCACCGCCTCAGCAGCCAAAAGAGGAATGCATT 780
consensus_8180#1 ------------------------------------------------------------
consensus_8180#0 TCCTCGCCATTGATCGAGGAAAATGTACCTGTTATTGATGAGCCACCACCTCCCAAGAAG 840
consensus_8180#1 ------------------------------------------------------------
consensus_8180#0 CGGCAGCAGGGCCGCCAACCCAAGGTACCAAGGGCTAAGAAGCCCAAGAAGTCTGCTGCT 900
consensus_8180#1 ------------------------------------------------------------
consensus_8180#0 CCTCGTGAGGATGGCGCACCACCCAATGCACCAGCACCACGGAGAAGGGGTCCCAGGAAG 960
consensus_8180#1 ---------CATAA-GCCTGGTTAGGTGAGCCAGAGGGCGAGCCAAGGGGTCCCATGAAG 50
** ** ** **** * *********** ****
consensus_8180#0 AATATAGGGATGGTAATTAATGGTATTGATTTGGACCTCTCAAGGATACCAACGCCCATT 1020
consensus_8180#1 AATATAGGGATGGTGATTAATGGTATTGATTTGGCCCTCTCAAGGATACCAACACCCATT 110
************** ******************* ****************** ******
consensus_8180#0 TGTTCTTGCACGGGCGCACCACAGCAGTGCTATCGGTGGGGTGCAGGTGGTTGGCAATCT 1080
consensus_8180#1 TGTACCTACACAGGCGCACCGCAGCAGTGCTATCGGTGGGGTGCTGGTGGTTGGCAATNT 170
*** * * *** ******** *********************** ************* *
consensus_8180#0 GCGTGCTGCACAACCACCAT-CTCAACGTACCCACTGCCAATGAGTACGAAGCGCCGTGG 1139
consensus_8180#1 GCGTGNTGCNCAACCACCGTTCTCAACATACCCACTGCCAATGAATACAAAGCGTCATGG 230
***** *** ******** * ****** **************** *** ***** * ***
consensus_8180#0 TGCACGAATCGCAGGCAGGAAGATGAGCCATGGTGCGTTCAAGAAAGTACTTGAGAAGCT 1199
consensus_8180#1 TGCACGAATCGCAGGCAGGAAGATGAGCCATGGAGCGTTCAAGAAAGTCCTTGAGAAGCT 290
********************************* ************** ***********
consensus_8180#0 TGCTGGTGAAGGTTATAATCTTAATAATCCGATTGACCTGAAGACCTTCTGGGCGAAGCA 1259
consensus_8180#1 TGCTGGCAAAGGCTACAATCTTAATAATCCGATTGACCTAAAGACCTTCTGGGCGAAGCA 350
****** **** ** *********************** ********************
consensus_8180#0 TGGAACAAACAAGTTTGTTACCATAA-----GGTAAAAGAC--AATGAAATTCTAAAATT 1312
consensus_8180#1 TGGAACAAACAAGTTTGTTACCATAATATAAGGTAAGAGACTAAAAGAAATTCTAAA-TT 409
************************** ***** **** ** *********** **
consensus_8180#0 TGTTGGCTTTGTAGGTTGCTCTGCAGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCT 1372
consensus_8180#1 TGTTGGCTTTGTAGGTTCCTCTGCTGCTGTTTGGTCTGAGTAATTGTCTGTATGTACTCT 469
***************** ****** ***********************************
consensus_8180#0 AGATTACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTAGGCATGTCCTGTCCCTTT-GC 1431
consensus_8180#1 AGATGACAAACTGCAGAATCCTTTTAGGTGTAGGTTTTATCCATGTCCTGTCCCTTTTGC 529
**** ********************************** **************** **
consensus_8180#0 AGTAGTTTACATGCCTCATCTGTGACCTGGGTGCTGACCTGTATGGTGGCTATCTGCATG 1491
consensus_8180#1 AGTAGTTTACATGCCTCATCTGTGACCTAGGAACTTACCTGTATGGTGGCTATCTGCATG 589
**************************** ** ** ************************
consensus_8180#0 TATCTTTGTCATTATCTTTACAAGTAGCAGTGTAATGCGACAATCTCTAATTTAGGTGGC 1551
consensus_8180#1 TATCTTTATCATTGTCTTCCCAAGTAGCAATGTAATGCGACAGTCTCTAATTTAAGTTGC 649
******* ***** **** ********* ************ *********** ** **
consensus_8180#0 ATGAAAGTTAATCTGTTCAACGTTTCTCATTAAAAAAAAA- 1591
consensus_8180#1 A---AAGTTAATCATTTGAATGTTAAAAAAAAAAAAAAAAA 687
* ********* ** ** *** * *********
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||