These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8186#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 987 fasta sequence [CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTTGTGATCGCTTGCTTGTTTCGTTTCGCCGCAGCCGCCCCACAAGACCTTCCGCATCAAGAAGAAGCTGGCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAACACCATCAGGTATAACGCGAAGCGCAGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCAGGAGGTGGCACCGGCTGCTGCCTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCAAGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGTAGTACTCTGGTTTACTGAGGATACCATGCTATGCTGTGCTGAGTAAAAGAACCATTCTAATATATCTGCCTTGTTGAAGTTAAAAAA] [+] EMBL AK059633 [CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTTGTGATCGCTTGCTTGTTTCGTTTCGCCGCAGCCGCCCCACAAGACCTTCCGCATCAAGAAGAAGCTGGCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAACACCATCAGGTATAACGCGAAGCGCAGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCAGGAGGTGGCACCGGCTGCTGCCTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCAAGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGTAGTACTCTGGTTTACTGAGGATACCATGCTATGCTGTGCTGAGTAAAAGAACCATTCTAATATATCTGCCT ] [+] EMBL AU058203 [ GCTGGCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAACACCATCAGGTATAACGCGAA NCAGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCAGGAGGTGGCACCGGCTGCTGCCTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCAAGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGTAGTACTCTGGTTTACTGAGGATACCATGCTATGCTGTGCTGAGTAAAAGAACCATTCTAATATATCTGCCTTGTTGAAGTTAAAAAA] consensusID : consensus_8186#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 407 fasta sequence [CTTCGTCCCCGCCGCGACGATGCCGTCCCACAAGACCTTCCGCATCAAGAAGAAGCTGGCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAACACCATCAGGTATAACGCGAAGGCAGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCAGGAGGTGGCACCGGCTGCTGCCTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCAAGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGTAGTACTCTGGTTTACTGAGGATACCATGCTATGCTGTGCTGAGTAAAAGAACCATTCTAATATATCTGCCTTGTTGAAGTTATTTCTCAGGCTTATTCTGTTTCAAAAAA] [+] EMBL AU164897 [CTTCGTCCCCGCCGCGACGATGCCGTCCCACAAGACCTTCCGCATCAAGAAGAAGCTGGCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAACACCATCAGGTATAACGCGAAGGCAGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCAGGAGGTGGCACCGGCTGCTGCCTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCAAGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGTAGTACTCTGGTTTACTGAGGATACCATGCTATGCTGTGCTGAGTAAAAGAACCATTCTAATATATCTGCCTTGTTGAAGTTATTTCTCAGGCTTATTCTGTTTCAAAAAA] [+] EMBL AU063094 [ GTCCCACAAGACCTTCCGCATCAAGAAGAAGCTGGCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATG GGCCNGACAACACCATCAGGTATAACGCGAAG AGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCAGGAGGTNGCACC GCTGCTG CTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCAAGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGTAGTACTCTGGT ] [+] EMBL CF334439 [ AACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAACACCATCATGTAca ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8186#0 CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTAC 60 consensus_8186#1 ------------------------------------------------------------ consensus_8186#0 TATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACC 120 consensus_8186#1 ------------------------------------------------------------ consensus_8186#0 CTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGG 180 consensus_8186#1 ------------------------------------------------------------ consensus_8186#0 GAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAG 240 consensus_8186#1 ------------------------------------------------------------ consensus_8186#0 TCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCC 300 consensus_8186#1 ------------------------------------------------------------ consensus_8186#0 GGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAA 360 consensus_8186#1 ------------------------------------------------------------ consensus_8186#0 CGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAA 420 consensus_8186#1 ------------------------------------------------------------ consensus_8186#0 AAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGAT 480 consensus_8186#1 ------------------------------------------------------------ consensus_8186#0 CCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTG 540 consensus_8186#1 ------------------------------------------------------------ consensus_8186#0 GCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTTGTGATCG 600 consensus_8186#1 ------------------------------------------------------------ consensus_8186#0 CTTGCTTGTTTCGTTTCGCCGCAGCCGCCCCACAAGACCTTCCGCATCAAGAAGAAGCTG 660 consensus_8186#1 CTTCGT--CCCCGCCGCGACGATGCCGTCCCACAAGACCTTCCGCATCAAGAAGAAGCTG 58 *** * ** ** ** **** ******************************** consensus_8186#0 GCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAAC 720 consensus_8186#1 GCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAAC 118 ************************************************************ consensus_8186#0 ACCATCAGGTATAACGCGAAGCGCAGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCA 780 consensus_8186#1 ACCATCAGGTATAACGCGAAG-GCAGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCA 177 ********************* ************************************** consensus_8186#0 GGAGGTGGCACCGGCTGCTGCCTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCA 840 consensus_8186#1 GGAGGTGGCACCGGCTGCTGCCTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCA 237 ************************************************************ consensus_8186#0 AGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGT 900 consensus_8186#1 AGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGT 297 ************************************************************ consensus_8186#0 AGTACTCTGGTTTACTGAGGATACCATGCTATGCTGTGCTGAGTAAAAGAACCATTCTAA 960 consensus_8186#1 AGTACTCTGGTTTACTGAGGATACCATGCTATGCTGTGCTGAGTAAAAGAACCATTCTAA 357 ************************************************************ consensus_8186#0 TATATCTGCCTTGTTGAAGTTAAAAAA----------------------- 987 consensus_8186#1 TATATCTGCCTTGTTGAAGTTATTTCTCAGGCTTATTCTGTTTCAAAAAA 407 ********************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||