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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8186#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 987 fasta sequence
[CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTTGTGATCGCTTGCTTGTTTCGTTTCGCCGCAGCCGCCCCACAAGACCTTCCGCATCAAGAAGAAGCTGGCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAACACCATCAGGTATAACGCGAAGCGCAGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCAGGAGGTGGCACCGGCTGCTGCCTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCAAGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGTAGTACTCTGGTTTACTGAGGATACCATGCTATGCTGTGCTGAGTAAAAGAACCATTCTAATATATCTGCCTTGTTGAAGTTAAAAAA]
[+] EMBL AK059633 [CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAGTCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCCGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTTGTGATCGCTTGCTTGTTTCGTTTCGCCGCAGCCGCCCCACAAGACCTTCCGCATCAAGAAGAAGCTGGCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAACACCATCAGGTATAACGCGAAGCGCAGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCAGGAGGTGGCACCGGCTGCTGCCTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCAAGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGTAGTACTCTGGTTTACTGAGGATACCATGCTATGCTGTGCTGAGTAAAAGAACCATTCTAATATATCTGCCT ]
[+] EMBL AU058203 [ GCTGGCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAACACCATCAGGTATAACGCGAA NCAGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCAGGAGGTGGCACCGGCTGCTGCCTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCAAGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGTAGTACTCTGGTTTACTGAGGATACCATGCTATGCTGTGCTGAGTAAAAGAACCATTCTAATATATCTGCCTTGTTGAAGTTAAAAAA]
consensusID : consensus_8186#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 407 fasta sequence
[CTTCGTCCCCGCCGCGACGATGCCGTCCCACAAGACCTTCCGCATCAAGAAGAAGCTGGCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAACACCATCAGGTATAACGCGAAGGCAGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCAGGAGGTGGCACCGGCTGCTGCCTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCAAGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGTAGTACTCTGGTTTACTGAGGATACCATGCTATGCTGTGCTGAGTAAAAGAACCATTCTAATATATCTGCCTTGTTGAAGTTATTTCTCAGGCTTATTCTGTTTCAAAAAA]
[+] EMBL AU164897 [CTTCGTCCCCGCCGCGACGATGCCGTCCCACAAGACCTTCCGCATCAAGAAGAAGCTGGCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAACACCATCAGGTATAACGCGAAGGCAGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCAGGAGGTGGCACCGGCTGCTGCCTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCAAGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGTAGTACTCTGGTTTACTGAGGATACCATGCTATGCTGTGCTGAGTAAAAGAACCATTCTAATATATCTGCCTTGTTGAAGTTATTTCTCAGGCTTATTCTGTTTCAAAAAA]
[+] EMBL AU063094 [ GTCCCACAAGACCTTCCGCATCAAGAAGAAGCTGGCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATG GGCCNGACAACACCATCAGGTATAACGCGAAG AGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCAGGAGGTNGCACC GCTGCTG CTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCAAGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGTAGTACTCTGGT ]
[+] EMBL CF334439 [ AACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAACACCATCATGTAca ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8186#0 CGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTAC 60
consensus_8186#1 ------------------------------------------------------------
consensus_8186#0 TATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACC 120
consensus_8186#1 ------------------------------------------------------------
consensus_8186#0 CTGTTGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGG 180
consensus_8186#1 ------------------------------------------------------------
consensus_8186#0 GAGCCCTCGGGCGCAAGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCCGTGAG 240
consensus_8186#1 ------------------------------------------------------------
consensus_8186#0 TCGGAAGCGGGGCCTGGCCCCTCCTTTTGGCTCTAAGGCCCGAGTCCCTCGGGCCGATCC 300
consensus_8186#1 ------------------------------------------------------------
consensus_8186#0 GGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAA 360
consensus_8186#1 ------------------------------------------------------------
consensus_8186#0 CGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAA 420
consensus_8186#1 ------------------------------------------------------------
consensus_8186#0 AAGCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGAT 480
consensus_8186#1 ------------------------------------------------------------
consensus_8186#0 CCTTTAGACCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGATAACTG 540
consensus_8186#1 ------------------------------------------------------------
consensus_8186#0 GCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTTGTGATCG 600
consensus_8186#1 ------------------------------------------------------------
consensus_8186#0 CTTGCTTGTTTCGTTTCGCCGCAGCCGCCCCACAAGACCTTCCGCATCAAGAAGAAGCTG 660
consensus_8186#1 CTTCGT--CCCCGCCGCGACGATGCCGTCCCACAAGACCTTCCGCATCAAGAAGAAGCTG 58
*** * ** ** ** **** ********************************
consensus_8186#0 GCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAAC 720
consensus_8186#1 GCGAAGAAGATGCGCCAGAACCGCCCCATCCCCTACTGGATCCGCATGCGGACCGACAAC 118
************************************************************
consensus_8186#0 ACCATCAGGTATAACGCGAAGCGCAGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCA 780
consensus_8186#1 ACCATCAGGTATAACGCGAAG-GCAGGCACTGGCGCCGCACCAAGCTTGGGTTCTGAGCA 177
********************* **************************************
consensus_8186#0 GGAGGTGGCACCGGCTGCTGCCTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCA 840
consensus_8186#1 GGAGGTGGCACCGGCTGCTGCCTGCGGATTTTGTTTTATGGATGTTTCAGTGTTTATGCA 237
************************************************************
consensus_8186#0 AGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGT 900
consensus_8186#1 AGCTTAGGATGTGATTCCATGATGCTTTTTATTAAGGTTTTCTGAAATGTTAAGGGTAGT 297
************************************************************
consensus_8186#0 AGTACTCTGGTTTACTGAGGATACCATGCTATGCTGTGCTGAGTAAAAGAACCATTCTAA 960
consensus_8186#1 AGTACTCTGGTTTACTGAGGATACCATGCTATGCTGTGCTGAGTAAAAGAACCATTCTAA 357
************************************************************
consensus_8186#0 TATATCTGCCTTGTTGAAGTTAAAAAA----------------------- 987
consensus_8186#1 TATATCTGCCTTGTTGAAGTTATTTCTCAGGCTTATTCTGTTTCAAAAAA 407
**********************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||