These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8187#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 811 fasta sequence [CTGAACCCCAGCCAGCGAACCAAGGCGGCGGCGGCGGCGGCGGCGACA-TGCAGTTCCTCCGAGGAGGCGGCGGCGGTAGCGGT-GGCGGCGGA-NTGGAGGGATGGCGTGGGAGGTGCTGAAGAGGCACTTCTCGCGGAAGCGGGCGG-TGGACGTGCGGCGGATCAACCCCAAGGTGCCCAAGGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCCTCACCGTCGGCAACACATGGAACCACGCCAAGGATGCTGGTATCAGTGGCCTGAATAGCAAGACTCACATGAAGATCCTGCTGAAATGGATGACGGGGAGAAGGATCGTGAAGCTGAACTGCGTTGGCACGGGCAACTCAAAGAAGTTCCTGTATTCCCCGTATTCTGCAGATGCAGATAAATCCGAAGAAGCAGCAGCAGAAGAGCTGAGTAAGGCTGCTGCTTCACAAGGGGGAAAAGCTACAAAAGGGCAACAGAAGAAACGTGCCACAGCCCTACACTGATTGTCGCTCATCACAATCTTATTGTTACGCTTCTGGGATTATTTTTGTTTTTAATCTTAGTGGTTAGGCAGGGCGAAATTCTGTTAAGATGATTCCATCCAAAACTGTGATGAACCTTTCTCATTGATGATGCAGTTATGCTGGCAGGCCAGCATTTTGTTGTAGTAGCACTGTCTGTATGTTCGCTAAGGAGCAGCAATAATTTGATGATGCTTCTATAGTTTGAGCTACGGCTAATAAGCCCTAGAAGATATGAAGCAACTAAGTTATATTTATGTGTAAAACTTT] [+] EMBL AK068948 [CTGAACCCCAGCCAGCGAACCAAGGCGGCGGCGGCGGCGGCGGCGACA TGCAGTTCCTCCGAGGAGGCGGCGGCGGTAGCGGT GGCGGCGGAGCTGGAGGGATGGCGTGGGAGGTGCTGAAGAGGCACTTCTCGCGGAAGCGGGCGG TGGACGTGCGGCGGATCAACCCCAAGGTGCCCAAGGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCCTCACCGTCGGCAACACATGGAACCACGCCAAGGATGCTGGTATCAGTGGCCTGAATAGTAAGACTCACATGAAGATCCTGCTGAAATGGATGACGGGGAGAAGGATCGTGAAGCTGAACTGCGTTGGCACGGGCAACTCAAAGAAGTTCCTGTATTCCCCGTATTCTGCAGATGCAGATAAATCCGAAGAAGCAGCAGCAGAAGAGCTGAGTAAGGCTGCTGCTTCACAAGGGGGAAAAGCTACAAAAGGGCAACAGAAGAAACGTGCCACAGCCCTACACTGATTGTCGCTCATCACAATCTTATTGTTACGCTTCTGGGATTATTTTTGTTTTTAATCTTAGTGGTTAGGCAGGGCGAAATTCTGTTAAGATGATTCCATCCAAAACTGTGATGAACCTTTCTCATTGATGATGCAGTTATGCTGGCAGGCCAGCATTTTGTTGTAGTAGCACTGTCTGTATGTTCGCTAAGGAGCAGCAATAATTTGATGATGCTTCTATAGTTTGAGCTACGGCTAATAAGCCCTAGAAGATATGAAGCAACTAAGTTATATTTATGTGTAAAACTTT] [+] EMBL OSC18071 [ CGAACCAAGGCGGCGGCGGCGGCGGCGGCGACA TGCAGTTCCTCCGAGGAGGCGGCGGCGGTAG GGT GGCGGCGGA NTGGAGGGATGGCGTGGGAGGTGCTGAAGAGGCACTTCTCGCGGAAGCGTGCGG TGGACGTGCGGCGGATCAACCCCAAGGTGCCCAAGGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCCTCACCGTCGGCAACACATGGAACCACGTCAAGGATGCTGGTATCAGTGGCCTGAATAGCAAGACTCACATGAAGATCCTGCTGAAATGGATGACGGGGAGAAGGATCGTTAAGCTGAACTGCGTTGGC ] [+] EMBL AU069653 [ anACCAAGGCGGCGGCGGCGGCGGCGGCGACANTGCAGTTCCTCCGAGGA GCGGCGGCGG NTCGGTANGCGACGGA NTGGAGGGATGGCGTGGGAGGTGCTGAAGAGGCACTTCTCGCGGAA GGCGGNTGGACGTGCGGCGGATCAACCCCAAGGTGCCCAAGGAGGAGGCCGTCG CATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCCTCACCGTCGGCAACACATGGAACCACGCCAAGGATGCTGGTATCAGTNGCCTGAATAGCAAGACTCACATGAAGATCCTGCTGAAATNGATGACGGGGAGAAGGATCGTGAAGCTGAACTGCGTTNGCACGGGCAACTCAAAGAAGTTCCTGTATT CCCGTATTCTGCAGATGC NATAAATCCG AGAAGCAGCA CAGAAGAGCTNAGTAAGGttctct ] [+] EMBL CA767294 [ CACCGTCGGCAACACATGGAACCACGCCAAGGATGCTGGTATCAGTGGCCTGAATAGCAAGACTCACATGAAGATCCTGCTGGAATGGATGACGGGGAGAAGGATCGTGAAGCTGAACTGCGTTGGCACGGGCAACTCAAAGAAGTTCCTGTATTCCCCGTATTCTGCAGATGCAGATAAATCCGAAGAAGCAGCAGCAGAAGAGCTGAGTAAGGCTGCTGCTTCACAAGGGGGAAAAGCTACAAAAGGGCAACAGAAGAAACGTGCCACAGCCCTACACTGATTGTCGCTCATCACAATCTTATTGTTACGCTTCTGGGATTATTTTTGTTTTTAATCTTAGTGGTTAGGCAGGGCGAAATTCTGTTAAGATGATTCCATCCAAAACTGTGATGAACCTTTCTCATTGATGATGCAGTTATGCTGGCAGGCCAGCATTTTGTTGTAGTAGCACTGTCTGTATGTTCGCTAAGGAGCAGCAATAATTTGATGATGCTTCTATAGTTTGAGCTACGGCTAATAAGCCCTAGAAGATATGAAGCAACTAAGTTATATTTATGTGTAAAAC ] consensusID : consensus_8187#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 776 fasta sequence [AGTTCCTCCGAGGAGGCGGCGGCGGTAGCGGTGGCGGCGGAGCTGGAGGGATGGCGTGGGAGGTGCTGAAGAGGCACTTCTCGCGGAAGCGGGCGGTGGACGTGCGGCGGATCAACCCCAAGGTGCCCAAGGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCCTCACCGTCGGCAACACATGGAACCACGCCAAGGTACGTTGCTTCTGACACTGGCACTACTCACCAGCTCTATGTTTAGTGTAGTCTACCAGATACCGGTGCAAATCTCCGGCTATGTGTGCATTCTACAGTGAAACAAACCTGCTGCGTTTCCCCCTAAATCAACAGTAGGTGAAGGTCTAAGATCAACTGTTATAGACGCCTACAAGTATTGCTCTACTCATTTCGTTGATCCAATGTTCTTTACACTATGAAATTGGTAGCGGCTCCTCCCTTTTTACCCCCTCTAGCTTCTTTCATTTGGATAAAAATATCAGCAGAGTAACCGTCCACTTAGGACTATTGCATAGCCCATTTAAGTATTTTGGTGAATCAGGCTTACCAGTGATCCACGTAACCCATTTTGCCACATCATCTTGCGATTTTCCGTGCTTTGATTCACGGTCTTTAGCTTATTCAGTCTGGTTAAAGTGGATTTTTTTTTATGTGCAATATGTGTGCGTGCCTGAGTGTTTGTCATACACTCATTTACAGAGACTGTTACTAGGATATCTACCAGTATATCCTTGTGATAAGTCTAGGTTTCTT] [+] EMBL CB677692 [AGTTCCTCCGAGGAGGCGGCGGCGGTAGCGGTGGCGGCGGAGCTGGAGGGATGGCGTGGGAGGTGCTGAAGAGGCACTTCTCGCGGAAGCGGGCGGTGGACGTGCGGCGGATCAACCCCAAGGTGCCCAAGGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCCTCACCGTCGGCAACACATGGAACCACGCCAAGGTACGTTGCTTCTGACACTGGCACTACTCACCAGCTCTATGTTTAGTGTAGTCTACCAGATACCGGTGCAAATCTCCGGCTATGTGTGCATTCTACAGTGAAACAAACCTGCTGCGTTTCCCCCTAAATCAACAGTAGGTGAAGGTCTAAGATCAACTGTTATAGACGCCTACAAGTATTGCTCTACTCATTTCGTTGATCCAATGTTCTTTACACTATGAAATTGGTAGCGGCTCCTCCCTTTTTACCCCCTCTAGCTTCTTTCATTTGGATAAAAATATCAGCAGAGTAACCGTCCACTTAGGACTATTGCATAGCCCATTTAAGTATTTTGGTGAATCAGGCTTACCAGTGATCCACGTAACCCATTTTGCCACATCATCTTGCGATTTTCCGTGCTTTGATTCACGGTCTTTAGCTTATTCAGTCTGGTTAAAGTGGATTTTTTTTTATGTGCAATATGTGTGCGTGCCTGAGTGTTTGTCATACACTCATTTACAGAGACTGTTACTAGGATATCTACCAGTATATCCTTGTGATAAGTCTAGGTTTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8187#0 CTGAACCCCAGCCAGCGAACCAAGGCGGCGGCGGCGGCGGCGGCGACATGCAGTTCCTCC 60 consensus_8187#1 ---------------------------------------------------AGTTCCTCC 9 ********* consensus_8187#0 GAGGAGGCGGCGGCGGTAGCGGTGGCGGCGGAN-TGGAGGGATGGCGTGGGAGGTGCTGA 119 consensus_8187#1 GAGGAGGCGGCGGCGGTAGCGGTGGCGGCGGAGCTGGAGGGATGGCGTGGGAGGTGCTGA 69 ******************************** ************************** consensus_8187#0 AGAGGCACTTCTCGCGGAAGCGGGCGGTGGACGTGCGGCGGATCAACCCCAAGGTGCCCA 179 consensus_8187#1 AGAGGCACTTCTCGCGGAAGCGGGCGGTGGACGTGCGGCGGATCAACCCCAAGGTGCCCA 129 ************************************************************ consensus_8187#0 AGGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCC 239 consensus_8187#1 AGGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCC 189 ************************************************************ consensus_8187#0 TCACCGTCGGCAACACATGGAACCACGCCAAGGA----TGCTGGTATCAGTGGCCTGAAT 295 consensus_8187#1 TCACCGTCGGCAACACATGGAACCACGCCAAGGTACGTTGCTTCTGACACTGGCACTACT 249 ********************************* **** * ** **** * * consensus_8187#0 AGCAAGACTCACATGAAGATCCTGCTGAAATGGATGACGGGGAGAAGGATCGTGAAGCTG 355 consensus_8187#1 CACCAGCTCTATGTTTAG--TGTAGTCTACCAGATACCGGTGCAAATCTCCGGCTATGTG 307 * ** * * ** * * * *** *** * ** ** * ** consensus_8187#0 AACTGCGTTGGCACGGGCAACTCAAAGAAGTTCCTGTATTCCCCGTATTCTGCAGATGCA 415 consensus_8187#1 ---TGCATT--CTACAGTGAAACAAACCTGCTGC-GTTTCCCCCTAAATCAACAGTAGGT 361 *** ** * * * **** * * * ** * **** * ** *** * consensus_8187#0 GATAAATCCGAAGAAGCAGCAGCAGAAGAGC-TGAGTAAGGCT--GCTGCTTCACAAGGG 472 consensus_8187#1 GAAGGTCTAAGATCAACTGTTATAGACGCCTACAAGTATTGCTCTACTCATTTCGTTGAT 421 ** * * * * *** * **** *** ** ** * consensus_8187#0 GGAAAAGCTACAAAAGGGCAACAGAAGAAACGTGCCACAGCCCTACACTGATTGTCGCTC 532 consensus_8187#1 CCAATGTTCTTTACACTATGAAATTGGTAGCGGCTCCTCCCTTTTTACCCCCTCTAGCTT 481 ** * * * * * * ** * * * ** * * *** consensus_8187#0 ATCACAATCTTATTGTTACGCTTCTGGGATTATTTTTGTTTTTAATCTTAGTGGTTAGGC 592 consensus_8187#1 CTTTCATTTGGATAAAAATATCAGCAGAGTAACCGTC-CACTTAGGACTATTGCATAGCC 540 * ** * ** * * * * * *** ** ** *** * consensus_8187#0 AGGGCGAA-ATTCTGTTAAGATGATTCCATCCAAAACTGTGATGAACCTTTCTCATTGAT 651 consensus_8187#1 CATTTAAGTATTTTGGTGAATCAGGCTTACCAGTGATCCACGTAACCCATTTTGCCACAT 600 * *** ** * * * * * * * ** ** * ** consensus_8187#0 GATGCAGTTATGCTGGCAGGCCAGCATTTTGTTGTAGTAGCACTGTCTGTATGTTCGCTA 711 consensus_8187#1 CATCTTGCGAT-TTTCCGTGCTTTGATTCACGGTCTTTAGCTTATTCAGTCTGGTTAAAG 659 ** * ** * * ** *** **** ** ** ** * consensus_8187#0 AGGAGCAGCAATAATTTGATGATGCTTCTATA-GTTTGAGCTACGGCTAATAAGCCCTAG 770 consensus_8187#1 TGGATTTTTTTTTATGTG-CAATATGTGTGCGTGCCTGAG-TGTTTGTCATACACTCATT 717 *** * ** ** ** * * * **** * * *** * * consensus_8187#0 AAGATATGAAGCAACTAAGTTATATTTATGTGTAAAACTTT------------------- 811 consensus_8187#1 TACAGAGACTGTTACTAGG--ATATCTACCAGTATATCCTTGTGATAAGTCTAGGTTTCT 775 * * * * **** * **** ** *** * * ** consensus_8187#0 - consensus_8187#1 T 776 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||