cluster # 8187

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Oryza sativa
cluster # 8187 cluster # 8187 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8187#0 length = 811 sequences # 4

consensus_8187#1 length = 776 sequences # 1

consensusID : consensus_8187#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 811
fasta sequence

                              [CTGAACCCCAGCCAGCGAACCAAGGCGGCGGCGGCGGCGGCGGCGACA-TGCAGTTCCTCCGAGGAGGCGGCGGCGGTAGCGGT-GGCGGCGGA-NTGGAGGGATGGCGTGGGAGGTGCTGAAGAGGCACTTCTCGCGGAAGCGGGCGG-TGGACGTGCGGCGGATCAACCCCAAGGTGCCCAAGGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCCTCACCGTCGGCAACACATGGAACCACGCCAAGGATGCTGGTATCAGTGGCCTGAATAGCAAGACTCACATGAAGATCCTGCTGAAATGGATGACGGGGAGAAGGATCGTGAAGCTGAACTGCGTTGGCACGGGCAACTCAAAGAAGTTCCTGTATTCCCCGTATTCTGCAGATGCAGATAAATCCGAAGAAGCAGCAGCAGAAGAGCTGAGTAAGGCTGCTGCTTCACAAGGGGGAAAAGCTACAAAAGGGCAACAGAAGAAACGTGCCACAGCCCTACACTGATTGTCGCTCATCACAATCTTATTGTTACGCTTCTGGGATTATTTTTGTTTTTAATCTTAGTGGTTAGGCAGGGCGAAATTCTGTTAAGATGATTCCATCCAAAACTGTGATGAACCTTTCTCATTGATGATGCAGTTATGCTGGCAGGCCAGCATTTTGTTGTAGTAGCACTGTCTGTATGTTCGCTAAGGAGCAGCAATAATTTGATGATGCTTCTATAGTTTGAGCTACGGCTAATAAGCCCTAGAAGATATGAAGCAACTAAGTTATATTTATGTGTAAAACTTT]

[+] EMBL AK068948             [CTGAACCCCAGCCAGCGAACCAAGGCGGCGGCGGCGGCGGCGGCGACA TGCAGTTCCTCCGAGGAGGCGGCGGCGGTAGCGGT GGCGGCGGAGCTGGAGGGATGGCGTGGGAGGTGCTGAAGAGGCACTTCTCGCGGAAGCGGGCGG TGGACGTGCGGCGGATCAACCCCAAGGTGCCCAAGGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCCTCACCGTCGGCAACACATGGAACCACGCCAAGGATGCTGGTATCAGTGGCCTGAATAGTAAGACTCACATGAAGATCCTGCTGAAATGGATGACGGGGAGAAGGATCGTGAAGCTGAACTGCGTTGGCACGGGCAACTCAAAGAAGTTCCTGTATTCCCCGTATTCTGCAGATGCAGATAAATCCGAAGAAGCAGCAGCAGAAGAGCTGAGTAAGGCTGCTGCTTCACAAGGGGGAAAAGCTACAAAAGGGCAACAGAAGAAACGTGCCACAGCCCTACACTGATTGTCGCTCATCACAATCTTATTGTTACGCTTCTGGGATTATTTTTGTTTTTAATCTTAGTGGTTAGGCAGGGCGAAATTCTGTTAAGATGATTCCATCCAAAACTGTGATGAACCTTTCTCATTGATGATGCAGTTATGCTGGCAGGCCAGCATTTTGTTGTAGTAGCACTGTCTGTATGTTCGCTAAGGAGCAGCAATAATTTGATGATGCTTCTATAGTTTGAGCTACGGCTAATAAGCCCTAGAAGATATGAAGCAACTAAGTTATATTTATGTGTAAAACTTT]
[+] EMBL OSC18071             [               CGAACCAAGGCGGCGGCGGCGGCGGCGGCGACA TGCAGTTCCTCCGAGGAGGCGGCGGCGGTAG GGT GGCGGCGGA NTGGAGGGATGGCGTGGGAGGTGCTGAAGAGGCACTTCTCGCGGAAGCGTGCGG TGGACGTGCGGCGGATCAACCCCAAGGTGCCCAAGGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCCTCACCGTCGGCAACACATGGAACCACGTCAAGGATGCTGGTATCAGTGGCCTGAATAGCAAGACTCACATGAAGATCCTGCTGAAATGGATGACGGGGAGAAGGATCGTTAAGCTGAACTGCGTTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU069653             [                anACCAAGGCGGCGGCGGCGGCGGCGGCGACANTGCAGTTCCTCCGAGGA GCGGCGGCGG NTCGGTANGCGACGGA NTGGAGGGATGGCGTGGGAGGTGCTGAAGAGGCACTTCTCGCGGAA   GGCGGNTGGACGTGCGGCGGATCAACCCCAAGGTGCCCAAGGAGGAGGCCGTCG CATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCCTCACCGTCGGCAACACATGGAACCACGCCAAGGATGCTGGTATCAGTNGCCTGAATAGCAAGACTCACATGAAGATCCTGCTGAAATNGATGACGGGGAGAAGGATCGTGAAGCTGAACTGCGTTNGCACGGGCAACTCAAAGAAGTTCCTGTATT CCCGTATTCTGCAGATGC NATAAATCCG AGAAGCAGCA CAGAAGAGCTNAGTAAGGttctct                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CA767294             [                                                                                                                                                                                                                                                    CACCGTCGGCAACACATGGAACCACGCCAAGGATGCTGGTATCAGTGGCCTGAATAGCAAGACTCACATGAAGATCCTGCTGGAATGGATGACGGGGAGAAGGATCGTGAAGCTGAACTGCGTTGGCACGGGCAACTCAAAGAAGTTCCTGTATTCCCCGTATTCTGCAGATGCAGATAAATCCGAAGAAGCAGCAGCAGAAGAGCTGAGTAAGGCTGCTGCTTCACAAGGGGGAAAAGCTACAAAAGGGCAACAGAAGAAACGTGCCACAGCCCTACACTGATTGTCGCTCATCACAATCTTATTGTTACGCTTCTGGGATTATTTTTGTTTTTAATCTTAGTGGTTAGGCAGGGCGAAATTCTGTTAAGATGATTCCATCCAAAACTGTGATGAACCTTTCTCATTGATGATGCAGTTATGCTGGCAGGCCAGCATTTTGTTGTAGTAGCACTGTCTGTATGTTCGCTAAGGAGCAGCAATAATTTGATGATGCTTCTATAGTTTGAGCTACGGCTAATAAGCCCTAGAAGATATGAAGCAACTAAGTTATATTTATGTGTAAAAC   ]




>consensus_8187#0
CTGAACCCCAGCCAGCGAACCAAGGCGGCGGCGGCGGCGGCGGCGACATGCAGTTCCTCC
GAGGAGGCGGCGGCGGTAGCGGTGGCGGCGGANTGGAGGGATGGCGTGGGAGGTGCTGAA
GAGGCACTTCTCGCGGAAGCGGGCGGTGGACGTGCGGCGGATCAACCCCAAGGTGCCCAA
GGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCCT
CACCGTCGGCAACACATGGAACCACGCCAAGGATGCTGGTATCAGTGGCCTGAATAGCAA
GACTCACATGAAGATCCTGCTGAAATGGATGACGGGGAGAAGGATCGTGAAGCTGAACTG
CGTTGGCACGGGCAACTCAAAGAAGTTCCTGTATTCCCCGTATTCTGCAGATGCAGATAA
ATCCGAAGAAGCAGCAGCAGAAGAGCTGAGTAAGGCTGCTGCTTCACAAGGGGGAAAAGC
TACAAAAGGGCAACAGAAGAAACGTGCCACAGCCCTACACTGATTGTCGCTCATCACAAT
CTTATTGTTACGCTTCTGGGATTATTTTTGTTTTTAATCTTAGTGGTTAGGCAGGGCGAA
ATTCTGTTAAGATGATTCCATCCAAAACTGTGATGAACCTTTCTCATTGATGATGCAGTT
ATGCTGGCAGGCCAGCATTTTGTTGTAGTAGCACTGTCTGTATGTTCGCTAAGGAGCAGC
AATAATTTGATGATGCTTCTATAGTTTGAGCTACGGCTAATAAGCCCTAGAAGATATGAA
GCAACTAAGTTATATTTATGTGTAAAACTTT

consensusID : consensus_8187#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 776
fasta sequence

                              [AGTTCCTCCGAGGAGGCGGCGGCGGTAGCGGTGGCGGCGGAGCTGGAGGGATGGCGTGGGAGGTGCTGAAGAGGCACTTCTCGCGGAAGCGGGCGGTGGACGTGCGGCGGATCAACCCCAAGGTGCCCAAGGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCCTCACCGTCGGCAACACATGGAACCACGCCAAGGTACGTTGCTTCTGACACTGGCACTACTCACCAGCTCTATGTTTAGTGTAGTCTACCAGATACCGGTGCAAATCTCCGGCTATGTGTGCATTCTACAGTGAAACAAACCTGCTGCGTTTCCCCCTAAATCAACAGTAGGTGAAGGTCTAAGATCAACTGTTATAGACGCCTACAAGTATTGCTCTACTCATTTCGTTGATCCAATGTTCTTTACACTATGAAATTGGTAGCGGCTCCTCCCTTTTTACCCCCTCTAGCTTCTTTCATTTGGATAAAAATATCAGCAGAGTAACCGTCCACTTAGGACTATTGCATAGCCCATTTAAGTATTTTGGTGAATCAGGCTTACCAGTGATCCACGTAACCCATTTTGCCACATCATCTTGCGATTTTCCGTGCTTTGATTCACGGTCTTTAGCTTATTCAGTCTGGTTAAAGTGGATTTTTTTTTATGTGCAATATGTGTGCGTGCCTGAGTGTTTGTCATACACTCATTTACAGAGACTGTTACTAGGATATCTACCAGTATATCCTTGTGATAAGTCTAGGTTTCTT]

[+] EMBL CB677692             [AGTTCCTCCGAGGAGGCGGCGGCGGTAGCGGTGGCGGCGGAGCTGGAGGGATGGCGTGGGAGGTGCTGAAGAGGCACTTCTCGCGGAAGCGGGCGGTGGACGTGCGGCGGATCAACCCCAAGGTGCCCAAGGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCCTCACCGTCGGCAACACATGGAACCACGCCAAGGTACGTTGCTTCTGACACTGGCACTACTCACCAGCTCTATGTTTAGTGTAGTCTACCAGATACCGGTGCAAATCTCCGGCTATGTGTGCATTCTACAGTGAAACAAACCTGCTGCGTTTCCCCCTAAATCAACAGTAGGTGAAGGTCTAAGATCAACTGTTATAGACGCCTACAAGTATTGCTCTACTCATTTCGTTGATCCAATGTTCTTTACACTATGAAATTGGTAGCGGCTCCTCCCTTTTTACCCCCTCTAGCTTCTTTCATTTGGATAAAAATATCAGCAGAGTAACCGTCCACTTAGGACTATTGCATAGCCCATTTAAGTATTTTGGTGAATCAGGCTTACCAGTGATCCACGTAACCCATTTTGCCACATCATCTTGCGATTTTCCGTGCTTTGATTCACGGTCTTTAGCTTATTCAGTCTGGTTAAAGTGGATTTTTTTTTATGTGCAATATGTGTGCGTGCCTGAGTGTTTGTCATACACTCATTTACAGAGACTGTTACTAGGATATCTACCAGTATATCCTTGTGATAAGTCTAGGTTTCTT]




>consensus_8187#1
AGTTCCTCCGAGGAGGCGGCGGCGGTAGCGGTGGCGGCGGAGCTGGAGGGATGGCGTGGG
AGGTGCTGAAGAGGCACTTCTCGCGGAAGCGGGCGGTGGACGTGCGGCGGATCAACCCCA
AGGTGCCCAAGGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACC
ATGGCCCCCTCACCGTCGGCAACACATGGAACCACGCCAAGGTACGTTGCTTCTGACACT
GGCACTACTCACCAGCTCTATGTTTAGTGTAGTCTACCAGATACCGGTGCAAATCTCCGG
CTATGTGTGCATTCTACAGTGAAACAAACCTGCTGCGTTTCCCCCTAAATCAACAGTAGG
TGAAGGTCTAAGATCAACTGTTATAGACGCCTACAAGTATTGCTCTACTCATTTCGTTGA
TCCAATGTTCTTTACACTATGAAATTGGTAGCGGCTCCTCCCTTTTTACCCCCTCTAGCT
TCTTTCATTTGGATAAAAATATCAGCAGAGTAACCGTCCACTTAGGACTATTGCATAGCC
CATTTAAGTATTTTGGTGAATCAGGCTTACCAGTGATCCACGTAACCCATTTTGCCACAT
CATCTTGCGATTTTCCGTGCTTTGATTCACGGTCTTTAGCTTATTCAGTCTGGTTAAAGT
GGATTTTTTTTTATGTGCAATATGTGTGCGTGCCTGAGTGTTTGTCATACACTCATTTAC
AGAGACTGTTACTAGGATATCTACCAGTATATCCTTGTGATAAGTCTAGGTTTCTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8187#0      CTGAACCCCAGCCAGCGAACCAAGGCGGCGGCGGCGGCGGCGGCGACATGCAGTTCCTCC 60
consensus_8187#1      ---------------------------------------------------AGTTCCTCC 9
                                                                         *********

consensus_8187#0      GAGGAGGCGGCGGCGGTAGCGGTGGCGGCGGAN-TGGAGGGATGGCGTGGGAGGTGCTGA 119
consensus_8187#1      GAGGAGGCGGCGGCGGTAGCGGTGGCGGCGGAGCTGGAGGGATGGCGTGGGAGGTGCTGA 69
                      ********************************  **************************

consensus_8187#0      AGAGGCACTTCTCGCGGAAGCGGGCGGTGGACGTGCGGCGGATCAACCCCAAGGTGCCCA 179
consensus_8187#1      AGAGGCACTTCTCGCGGAAGCGGGCGGTGGACGTGCGGCGGATCAACCCCAAGGTGCCCA 129
                      ************************************************************

consensus_8187#0      AGGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCC 239
consensus_8187#1      AGGAGGAGGCCGTCGCCATCTCCGGTCGCCTCCTCCAGATCTTCACCGACCATGGCCCCC 189
                      ************************************************************

consensus_8187#0      TCACCGTCGGCAACACATGGAACCACGCCAAGGA----TGCTGGTATCAGTGGCCTGAAT 295
consensus_8187#1      TCACCGTCGGCAACACATGGAACCACGCCAAGGTACGTTGCTTCTGACACTGGCACTACT 249
                      *********************************     ****  *  ** ****   * *

consensus_8187#0      AGCAAGACTCACATGAAGATCCTGCTGAAATGGATGACGGGGAGAAGGATCGTGAAGCTG 355
consensus_8187#1      CACCAGCTCTATGTTTAG--TGTAGTCTACCAGATACCGGTGCAAATCTCCGGCTATGTG 307
                        * **    *  *  **    *  *  *   ***  *** *  **    **   *  **

consensus_8187#0      AACTGCGTTGGCACGGGCAACTCAAAGAAGTTCCTGTATTCCCCGTATTCTGCAGATGCA 415
consensus_8187#1      ---TGCATT--CTACAGTGAAACAAACCTGCTGC-GTTTCCCCCTAAATCAACAGTAGGT 361
                         *** **  *    *  *  ****   * * * ** * ****  * **  ***  *  

consensus_8187#0      GATAAATCCGAAGAAGCAGCAGCAGAAGAGC-TGAGTAAGGCT--GCTGCTTCACAAGGG 472
consensus_8187#1      GAAGGTCTAAGATCAACTGTTATAGACGCCTACAAGTATTGCTCTACTCATTTCGTTGAT 421
                      **         *  * * *    *** *      ****  ***   **  **     *  

consensus_8187#0      GGAAAAGCTACAAAAGGGCAACAGAAGAAACGTGCCACAGCCCTACACTGATTGTCGCTC 532
consensus_8187#1      CCAATGTTCTTTACACTATGAAATTGGTAGCGGCTCCTCCCTTTTTACCCCCTCTAGCTT 481
                        **        * *     * *   * * **   *    *  *  **    * * *** 

consensus_8187#0      ATCACAATCTTATTGTTACGCTTCTGGGATTATTTTTGTTTTTAATCTTAGTGGTTAGGC 592
consensus_8187#1      CTTTCATTTGGATAAAAATATCAGCAGAGTAACCGTC-CACTTAGGACTATTGCATAGCC 540
                       *  ** *   **    *        *  * *   *     ***    ** **  *** *

consensus_8187#0      AGGGCGAA-ATTCTGTTAAGATGATTCCATCCAAAACTGTGATGAACCTTTCTCATTGAT 651
consensus_8187#1      CATTTAAGTATTTTGGTGAATCAGGCTTACCAGTGATCCACGTAACCCATTTTGCCACAT 600
                            *  *** ** * *         * *    *      * * ** ** *     **

consensus_8187#0      GATGCAGTTATGCTGGCAGGCCAGCATTTTGTTGTAGTAGCACTGTCTGTATGTTCGCTA 711
consensus_8187#1      CATCTTGCGAT-TTTCCGTGCTTTGATTCACGGTCTTTAGCTTATTCAGTCTGGTTAAAG 659
                       **   *  **  *  *  **    ***         ****    ** ** ** *     

consensus_8187#0      AGGAGCAGCAATAATTTGATGATGCTTCTATA-GTTTGAGCTACGGCTAATAAGCCCTAG 770
consensus_8187#1      TGGATTTTTTTTTATGTG-CAATATGTGTGCGTGCCTGAG-TGTTTGTCATACACTCATT 717
                       ***       * ** **   **   * *    *  **** *     * ***  * *   

consensus_8187#0      AAGATATGAAGCAACTAAGTTATATTTATGTGTAAAACTTT------------------- 811
consensus_8187#1      TACAGAGACTGTTACTAGG--ATATCTACCAGTATATCCTTGTGATAAGTCTAGGTTTCT 775
                       * * *    *  **** *  **** **   *** * * **                   

consensus_8187#0      -
consensus_8187#1      T 776