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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8198#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1043 fasta sequence
[GGAAGCTTTCACTCTCTAGTAGTAGGTGTGTCCTTTACATTTGCTAGTCTCCACTTTCCGAGCTCGATCGATCGAGCATGGAAGCCACAACCTCCAGCTTGCTCGTGCGCCCCGTCGACACGCGGCTCTCCGCCGCCTCCCTCCCCATCGTCGTCCGCGCCCGCCGGCGCGTGGCCGTCGTCACGGCGGCGGCGCCGGAGCGGAAGCCGGCCGCGGCGGCGAGCAGCAGCAACTACGTGGTGGTGCCGCTGGTCGCGGCGCCGTCGGGGATCACGCGGCCGCTGGTGGAAATCCTGCGCGACCTCAACAAGCGCGTCCCCGACACCGTCGTCCGTTCCTCCCGCCGCCGCGCGTCGCCCTCCGATCCGGTCATCCCCTGGTATCATGCCAACAGGATGCTAAGCTTTTATGCTCCAGGCTGGTGTGGAGAGGTCCGTGATGTTATTTACACTGACAATGGGAAAGTGACAGTGATATATCGTGTCACAGTACGAGGAACAGATGGAGAGGTTCATAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGATTTGATGATCCCGTGGCTGCTGC-AGAAGAGGCCGCATTC-TGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTA-CCACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCCACTTCATAAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTTTGATGTTTTGAACAACAACACGTGTTTAGACGTGAGGCATGGTAATAGTTTAAGACTAATCTATACATTGTGTTCTAATATCTTTAAACTATATAGTTATTAATAGTTAAAGTTT]
[+] EMBL AK071441 [GGAAGCTTTCACTCTCTAGTAGTAGGTGTGTCCTTTACATTTGCTAGTCTCCACTTTCCGAGCTCGATCGATCGAGCATGGAAGCCACAACCTCCAGCTTGCTCGTGCGCCCCGTCGACACGCGGCTCTCCGCCGCCTCCCTCCCCATCGTCGTCCGCGCCCGCCGGCGCGTGGCCGTCGTCACGGCGGCGGCGCCGGAGCGGAAGCCGGCCGCGGCGGCGAGCAGCAGCAACTACGTGGTGGTGCCGCTGGTCGCGGCGCCGTCGGGGATCACGCGGCCGCTGGTGGAAATCCTGCGCGACCTCAACAAGCGCGTCCCCGACACCGTCGTCCGTTCCTCCCGCCGCCGCGCGTCGCCCTCCGATCCGGTCATCCCCTGGTATCATGCCAACAGGATGCTAAGCTTTTATGCTCCAGGCTGGTGTGGAGAGGTCCGTGATGTTATTTACACTGACAATGGGAAAGTGACAGTGATATATCGTGTCACAGTACGAGGAACAGATGGAGAGGTTCATAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGATTTGATGATCCCGTGGCTGCTGC AGAAGAGGCCGCATTC TGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTA CCACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCCACTTCATAAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTT ]
[+] EMBL AK070236 [ AGCTCGATCGATCGAGCATGGAAGCCACAACCTCCAGCTTGCTCGTGCGCCCCGTCGACACGCGGCTCTCCGCCGCCTCCCTCCCCATCGTCGTCCGCGCCCGCCGGCGCGTGGCCGTCGTCACGGCGGCGGCGCCGGAGCGGAAGCCGGCCGCGGCGGCGAGCAGCAGCAACTACGTGGTGGTGCCGCTGGACGCGGCGCCGTCGGGGATCACGCGGCCGCTGGTGGAAATCCTGCGCGACCTCAACAAGCGCGTCCCCGACACCGTCGTCCGTTCCTCCCGCCGCCGCGCGTCGCCCTCCGATCCGGTCATCCCCTGGTATCATGCCAACAGGATGCTAAGCTTTTATGCTCCAGGCTGGTGTGGAGAGGTCCGTGATGTTATTTACACTGACAATGGGAAAGTGACAGTGGTATATCGTGTCACAGTACGAGGAACAGATGGAGAGGTTCATAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGATTTGATGATCCCGTGGCTGCTGC AGAAGAGGCCGCATTC TGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTA CCACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCCACTTCATAAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTTTGATGTTTTGAACAACAACACGTGTTTAGACGTGAGGCATGGTAATAGTTTAAGACTAATCTATACATTGTGTTCTAATATCTTTAAACTATATAGTTATTAATAGTTAAAGTTT]
[-] EMBL CB627307 [ TAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGGTTTGATGATCCCGTGGCTGCTGC AGAAGAGGCCGCATTC TGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTA CCACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCCACTTCATCAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTTTGATGTTTTGAACAACAACACGTGTTTAGACGTGAGGCATGGTAATAGTTTAAGACTAATCTATACATTG ]
[+] EMBL AU029474 [ TGATCCCGTTGCTGCTGCAAGAAGAGGCCGCATTCTTGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTACCCACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCCACTTCATAAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTAaaaaaaaa ]
consensusID : consensus_8198#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 763 fasta sequence
[AGGGGGCAGAAAGAAAGGTAGAAGGGGGTAATGTGTGGTAGAGATTTATTTCGCGAACGCTTTTTTTTTTCGCGAACGCGGTAGAGATTTAACTGTGGTTTAACAGAATGCTATATGAGAACTGTGATAACTTTCAGTGCTATATCAAAGTGAACCATAATCTTCGGGTGCTATAAAACTAAAATGATGGCACCGAACCAAGTTTGCCTTTGTTTGTTTGTTTTATGTGAATTGTTTCTATGGATGCAGGTTCATAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGGTTTGATGATCCCGTGGCTGCTGCAGAAGAGGCCGCATTCTGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTACCACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCCACTTCATCAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTTTGATGTTTTGAACAACAACACGTGTTTAGACGTGAGGCATGGTAATAGTAAGGGACTAATCTATACATTGTGTTCTAATAAAAAAAATTTATGGA]
[-] EMBL CB629552 [AGGGGGCAGAAAGAAAGGTAGAAGGGGGTAATGTGTGGTAGAGATTTATTTCGCGAACGCTTTTTTTTTTCGCGAACGCGGTAGAGATTTAACTGTGGTTTAACAGAATGCTATATGAGAACTGTGATAACTTTCAGTGCTATATCAAAGTGAACCATAATCTTCGGGTGCTATAAAACTAAAATGATGGCACCGAACCAAGTTTGCCTTTGTTTGTTTGTTTTATGTGAATTGTTTCTATGGATGCAGGTTCATAGGGAGGCAGCTGGAACAACATCACTGAATGATGCACGGTTTGATGATCCCGTGGCTGCTGCAGAAGAGGCCGCATTCTGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTACCACGAAGACGAGACTCCGTAGGGAAGTGGCGCAGCATCCACTTCATCAGTTCTGCGTTGGTTCTCGCCTGATTTGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCAGGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAGATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGCAAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTTTGATGTTTTGAACAACAACACGTGTTTAGACGTGAGGCATGGTAATAGTAAGGGACTAATCTATACATTGTGTTCTAATAAAAAAAATTTATGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8198#0 GGAAGCTTTCACTCTCTAGTAGTAGGTGTGTCCTTTACATTTGCTAGTCTCCACTTTCCG 60
consensus_8198#1 ------------------------------------------------------------
consensus_8198#0 AGCTCGATCGATCGAGCATGGAAGCCACAACCTCCAGCTTGCTCGTGCGCCCCGTCGACA 120
consensus_8198#1 ------------------------------------------------------------
consensus_8198#0 CGCGGCTCTCCGCCGCCTCCCTCCCCATCGTCGTCCGCGCCCGCCGGCGCGTGGCCGTCG 180
consensus_8198#1 ------------------------------------------------------------
consensus_8198#0 TCACGGCGGCGGCGCCGGAGCGGAAGCCGGCCGCGGCGGCGAGCAGCAGCAACTACGTGG 240
consensus_8198#1 ------------------------------------------------------------
consensus_8198#0 TGGTGCCGCTGGTCGCGGCGCCGTCGGGGATCACGCGGCCGCTGGTGGAAATCCTGCGCG 300
consensus_8198#1 -------------------------AGGGGGCAGAAAG--AAAGGTAGAAGG---GGGTA 30
*** ** * *** *** * *
consensus_8198#0 ACCTCAACAAGCGCGTCCCCGACACCGTCGTCCGTTCCTCCCGCCGCCGCGCGTCGCCCT 360
consensus_8198#1 ATGTGTGGTAGAG-ATTTATTTCGCGAACGCTTTTTTTTTTCGCGAACGCG-GTAGAGAT 88
* * ** * * * * ** ** * *** **** ** * *
consensus_8198#0 CCGATCCGGTCATCCCCTGGTATCATGCCAACAGGATGCTAAGCTTTTATGCTCCAGGCT 420
consensus_8198#1 TTAACTGTGGTTTAACAGAATGCTATATGAGAACTGTGATAACTTTCAGTGCTATATCAA 148
* * * * * ** * * ** *** ** **** *
consensus_8198#0 GGTGTGGAGAGGTCCGTGA-TGTTAT----TTACACTGACAATGGGAAAGTGACAGTGAT 475
consensus_8198#1 AGTGAACCATAATCTTCGGGTGCTATAAAACTAAAATGATGGCACCGAACCAAGTTTGCC 208
*** ** * ** *** ** * *** ** * **
consensus_8198#0 ATATCGTGTC-ACAGTACGAGGAACAG----ATGGAG--AGGTTCATAGGGAGGCAGCTG 528
consensus_8198#1 TTTGTTTGTTTGTTTTATGTGAATTGTTTCTATGGATGCAGGTTCATAGGGAGGCAGCTG 268
* *** ** * * * ***** *********************
consensus_8198#0 GAACAACATCACTGAATGATGCACGATTTGATGATCCCGTGGCTGCTGCAGAAGAGGCCG 588
consensus_8198#1 GAACAACATCACTGAATGATGCACGGTTTGATGATCCCGTGGCTGCTGCAGAAGAGGCCG 328
************************* **********************************
consensus_8198#0 CATTCTGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTACCACGAAGACGAGA 648
consensus_8198#1 CATTCTGCAAGGCCTGCGCAAGGTTTGGCTTTGGTCTGTATCTTTACCACGAAGACGAGA 388
************************************************************
consensus_8198#0 CTCCGTAGGGAAGTGGCGCAGCATCCACTTCATAAGTTCTGCGTTGGTTCTCGCCTGATT 708
consensus_8198#1 CTCCGTAGGGAAGTGGCGCAGCATCCACTTCATCAGTTCTGCGTTGGTTCTCGCCTGATT 448
********************************* **************************
consensus_8198#0 TGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCA 768
consensus_8198#1 TGGTTCAAAAGGCTGTGGTTGATCCATCTCTCTGTTTATCAAGGTTTTCAGTCTGTATCA 508
************************************************************
consensus_8198#0 GGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAG 828
consensus_8198#1 GGAGTTGAAGTATCATTCATACTGGAATTCTCTTTATCTTCTGAACCTCTTTTCTTGTAG 568
************************************************************
consensus_8198#0 ATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGC 888
consensus_8198#1 ATACGAGTCAATGAGGCCCCGTCTGCCACTTCTTTCCTTTTTGGCACTGTTATAAAGAGC 628
************************************************************
consensus_8198#0 AAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTTTGATGTTTTGAACAACAACA 948
consensus_8198#1 AAATACACGAGTACTCCTACGGTTCTGGTTCCATAATTTTTGATGTTTTGAACAACAACA 688
************************************************************
consensus_8198#0 CGTGTTTAGACGTGAGGCATGGTAATAGTTTAAGACTAATCTATACATTGTGTTCTAATA 1008
consensus_8198#1 CGTGTTTAGACGTGAGGCATGGTAATAGTAAGGGACTAATCTATACATTGTGTTCTAATA 748
***************************** ***************************
consensus_8198#0 TCTTTAAACTATATAGTTATTAATAGTTAAAGTTT 1043
consensus_8198#1 AAAAAAATTTATGGA-------------------- 763
** *** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||