cluster # 8204

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Oryza sativa
cluster # 8204 cluster # 8204 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8204#0 length = 676 sequences # 4

consensus_8204#1 length = 184 sequences # 1

consensusID : consensus_8204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 676
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTCATGAAATTTATTATGATATATGATTTTGATTTGGAATCTTCCAGCAGAAAAGCATCGGAATTGAGCACGATAATTGCACAAAACTAAGATTAACAGGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCCAAAATCCCACCTAGCCAAAACACTGGTCCGATGGCAATGGACCCGGGAGCGACCCAACCTCGAAGAACTGGAACCCGAAGACGACAGCAATGGCAGCGGCAGCTAGATACGACACGCCCTCTGCGGCGCCGAGGAGTCCGAACGGCCCGGCCGGGAGGCCCGACCCTGTGCGCACCTTCGTCGTCAGCGACCACCCAATCAGCGCCGCCACCACAAGGTAGCTAACACCCTCCGCTGCGCCGAGAGCGCCACCGGGGCCCGGTGGGAGGCCGCAGCCCGTTGTCTTGAGCGTGTAGAGGGACCAGGCAACGACCGAGCTAGACGCCAGCCCGGCCGCACCGGCGGCGAGCTCGAGGGTGCTGTTGCCACCGCTAGGCTCGGCCTTGCACGTGGTCGTGAGCCGTCTGGTGCCGCGTCGGAGAATATCGCGGCTAGGAGTTGATGTCGTGGAGACGCCTGGTGCAGTTGCTGGGAAGAGGGGGTGGAGGGTTAAGGA]

[-] EMBL CA754448             [TTTTTTTTTTTTTTTTTTTTTTTTTTTCATGAAATTTATTATGATATATGATTTTGATTTGGAATCTTCCAGCAGAAAAGCATCGGAATTGAGCACGATAATTGCACAAAACTAAGATTAACAGGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCCAAAATCCCACCTAGCCAAAACACTGGTCCGATGGCAATGGACCCGGGAGCGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL AK063872             [                                 ATTTATTATGATATATGATTTTGATTTGGAATCTTCCAGCAGAAAAGCATCGGAATTGAGCACGATAATTGCACAAAACTAAGATTAACAGGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCCAAAATCCCACCTAGCCAAAACACTGGTCCGATGGCAATGGACCCGGGAGCGACCCAACCTCGAAGAACTGGAACCCGAAGACGACAGCAATGGCAGCGGCAGCTAGATACGACACGCCCTCTGCGGCGCCGAGGAGTCCGAACGGCCCGGCCGGGAGGCCCGACCCTGTGCGCACCTTCGTCGTCAGCGACCACCCAATCAGCGCCGCCACCACAAGGTAGCTAACAC                                                                                                                                                                                                                                                                            ]
[+] EMBL CB683007             [                                              TATGATTTTGATTTGGAATCTTCCAGCAGAAAAGCATCGGAATTGAGCACGATAATTGCACAAAACTAAGATTAACAGGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCCAAAATCCCACCTAGCCAAAACACTGGTCCGATGGCAATGGACCCGGGAGCGACCCAACCTCGAAGAACTGGAACCCGAAGACGACAGCAATGGCAGCGGCAGCTAGATACGACACGCCCTCTGCGGCGCCGAGGAGTCCGAACGGCCCGGCCGGGAGGCCCGACCCTGTGCGCACCTTCGTCGTCAGCGACCACCCAATCAGCGCCGCCACCACAAGGTAGCTAACACCCTCCGCTGCGCCGAGAGCGCCACCGGGGCCCGGTGGGAGGCCGCAGCCCGTTGTCTTGAGCGTGTAGAGGGACCAGGCAACGACCGAGCTAGACGCCAGCCCGGCCGCACCGGCGGCGAGCTCGAGGGTGCTGTTGCCACCGCTAGGCTCGGCCTTGCACGTGGTCGTGAGCCGTCTGGTGCCGCGTCGGAGAATATCGCGGCTAGGAGTTGATGTCGTGGAGACGCCTGGTGCAGTTGCTGGGAAGAGGGGGTGGAGGGTTAAGGA]
[-] EMBL CB683006             [                                               ATGATTTTGATTTGGAATCTTCCAGCAGAAAAGCATCGGAATTGAGCACGATAATTGCACAAAACTAAGATTAACAGGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCCAAAATCCCACCTAGCCAAAACACTGGTCCGATGGCAATGGACCCGGGAGCGACCCAACCTCGAAGAACTGGAACCCGAAGACGACAGCAATGGCAGCGGCAGCTAGATACGACACGCCCTCTGCGGCGCCGAGGAGTCCGAACGGCCCGGCCGGGAGGCCCGACCCTGTGCGCACCTTCGTCGTCAGCGACCACCCAATCAGCGCCGCCACCACAAGGTAGCTAACAC                                                                                                                                                                                                                                                                            ]




>consensus_8204#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTCATGAAATTTATTATGATATATGATTTTGATTT
GGAATCTTCCAGCAGAAAAGCATCGGAATTGAGCACGATAATTGCACAAAACTAAGATTA
ACAGGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCC
AAAATCCCACCTAGCCAAAACACTGGTCCGATGGCAATGGACCCGGGAGCGACCCAACCT
CGAAGAACTGGAACCCGAAGACGACAGCAATGGCAGCGGCAGCTAGATACGACACGCCCT
CTGCGGCGCCGAGGAGTCCGAACGGCCCGGCCGGGAGGCCCGACCCTGTGCGCACCTTCG
TCGTCAGCGACCACCCAATCAGCGCCGCCACCACAAGGTAGCTAACACCCTCCGCTGCGC
CGAGAGCGCCACCGGGGCCCGGTGGGAGGCCGCAGCCCGTTGTCTTGAGCGTGTAGAGGG
ACCAGGCAACGACCGAGCTAGACGCCAGCCCGGCCGCACCGGCGGCGAGCTCGAGGGTGC
TGTTGCCACCGCTAGGCTCGGCCTTGCACGTGGTCGTGAGCCGTCTGGTGCCGCGTCGGA
GAATATCGCGGCTAGGAGTTGATGTCGTGGAGACGCCTGGTGCAGTTGCTGGGAAGAGGG
GGTGGAGGGTTAAGGA

consensusID : consensus_8204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 184
fasta sequence

                              [TTTTTTTTGCAAAACTAAGATTAACAGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCCAAAATCCCACCTAGCCAAAACACTGGTCCTGATGGCAATGGACCTGGGAGCTGACTGGACGCTGTGGGTCTGACCCTGGTGAATTCCTGGACCTGTGTACCT]

[-] EMBL BI797407             [TTTTTTTTGCAAAACTAAGATTAACAGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCCAAAATCCCACCTAGCCAAAACACTGGTCCTGATGGCAATGGACCTGGGAGCTGACTGGACGCTGTGGGTCTGACCCTGGTGAATTCCTGGACCTGTGTACCT]




>consensus_8204#1
TTTTTTTTGCAAAACTAAGATTAACAGGTAGTATGTTCAGTTACTAATAACATATTCAAC
TCACGAAAACATGTGAGTTCCCAAAATCCCACCTAGCCAAAACACTGGTCCTGATGGCAA
TGGACCTGGGAGCTGACTGGACGCTGTGGGTCTGACCCTGGTGAATTCCTGGACCTGTGT
ACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8204#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTCATGAAATTTATTATGATATATGATTTTGATTT 60
consensus_8204#1      ------------------------------------------------------------
                                                                                  

consensus_8204#0      GGAATCTTCCAGCAGAAAAGCATCGGAATTGAGCACGATAATTGCACAAAACTAAGATTA 120
consensus_8204#1      -------------------------------------TTTTTTTTGCAAAACTAAGATTA 23
                                                            *  **   **************

consensus_8204#0      ACAGGGTAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCC 180
consensus_8204#1      ACAGG-TAGTATGTTCAGTTACTAATAACATATTCAACTCACGAAAACATGTGAGTTCCC 82
                      ***** ******************************************************

consensus_8204#0      AAAATCCCACCTAGCCAAAACACTGGTCC-GATGGCAATGGACCCGGGAGC-GACCCAAC 238
consensus_8204#1      AAAATCCCACCTAGCCAAAACACTGGTCCTGATGGCAATGGACCTGGGAGCTGACTGGAC 142
                      ***************************** ************** ****** ***   **

consensus_8204#0      CTCGAAGAACTGGAACCCGAAGACGACAGCAATGGCAGCGGCAGCTAGATACGACACGCC 298
consensus_8204#1      GCTGTGGGTCTGACCCTGGTGAATTCCTGGACCTGT----GTACCT-------------- 184
                         *  *  ***   *  *   *   * * *   *     * * **              

consensus_8204#0      CTCTGCGGCGCCGAGGAGTCCGAACGGCCCGGCCGGGAGGCCCGACCCTGTGCGCACCTT 358
consensus_8204#1      ------------------------------------------------------------
                                                                                  

consensus_8204#0      CGTCGTCAGCGACCACCCAATCAGCGCCGCCACCACAAGGTAGCTAACACCCTCCGCTGC 418
consensus_8204#1      ------------------------------------------------------------
                                                                                  

consensus_8204#0      GCCGAGAGCGCCACCGGGGCCCGGTGGGAGGCCGCAGCCCGTTGTCTTGAGCGTGTAGAG 478
consensus_8204#1      ------------------------------------------------------------
                                                                                  

consensus_8204#0      GGACCAGGCAACGACCGAGCTAGACGCCAGCCCGGCCGCACCGGCGGCGAGCTCGAGGGT 538
consensus_8204#1      ------------------------------------------------------------
                                                                                  

consensus_8204#0      GCTGTTGCCACCGCTAGGCTCGGCCTTGCACGTGGTCGTGAGCCGTCTGGTGCCGCGTCG 598
consensus_8204#1      ------------------------------------------------------------
                                                                                  

consensus_8204#0      GAGAATATCGCGGCTAGGAGTTGATGTCGTGGAGACGCCTGGTGCAGTTGCTGGGAAGAG 658
consensus_8204#1      ------------------------------------------------------------
                                                                                  

consensus_8204#0      GGGGTGGAGGGTTAAGGA 676
consensus_8204#1      ------------------