cluster # 8216

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Oryza sativa
cluster # 8216 cluster # 8216 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8216#0 length = 445 sequences # 2

consensus_8216#1 length = 422 sequences # 2
consensus_8216#2 length = 329 sequences # 1

consensusID : consensus_8216#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 445
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGAAACCATCCATTTTTTTTATTGGCGACAAATTTATCAAATATGCCCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAAACCGGCCGGAAAGGGGGGGAAAAAATTTTTACATTTGTGTTAAAAACAAAGGCCATTGAAATGGGACATAACCAAACTGGAAAATAAAAATATTTAGCATATTATATATTGGTATATCATCAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCACCAGCGCGAAGCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAAAAAAACTAATCAACTGCCCCTGCCTGACG]

[+] EMBL CF312994             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGAAACCATCCATTTTTTTTATTGGCGACAAATTTATCAAATATGCCCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAAACCGGCCGGAAAGGGGGGGAAAAAATTTTTACATTTGTGTTAAAAACAAAGGCCATTGAAATGGGACATAACCAAACTGGAAAATAAAAATATTTAGCATATTATATATTGGTATATCATCAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCACCAGCGCGAAGCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAAAAAAACTAATCAACTGC            ]
[+] EMBL CF300109             [     TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGAAACCATCCATTTTTTTTATTGGCGACAAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAAACCGGCCGGAGAGGGGGGGGGGAAATTTTTACATTTGTGTTAAAAACAAAGGCCGTTGAAATGGTCCATAACCAAACTGGAAAATAAAAATATTTAGCATTTTATATTTTGATATATCATCAACATACCCCAAAACAAAGCTGCATACTTTTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAACTTAATTGCCACCAAACTCCTCCCAACCTGGGGGCTTGTAGGCAAAAAAACTAATCAACTGCCCCTGCCTGACG]




>consensus_8216#0
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGAAACCATCCATT
TTTTTTATTGGCGACAAATTTATCAAATATGCCCTAAATACATATCTTGGGGGTATATAG
CCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAAA
CCGGCCGGAAAGGGGGGGAAAAAATTTTTACATTTGTGTTAAAAACAAAGGCCATTGAAA
TGGGACATAACCAAACTGGAAAATAAAAATATTTAGCATATTATATATTGGTATATCATC
AACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCACCAGCGCGAAG
CTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAAAAAA
ACTAATCAACTGCCCCTGCCTGACG

consensusID : consensus_8216#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 422
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT--TTTTTTTTTTATCAAATATGCTCTAAATACATATCTTGGGGGTATAATACCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTTTTACATTTGTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATTTAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCCCCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCCCCTGCCTGACGTTGTCAAACCCGATGAT]

[+] EMBL CF337963             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTT  TTTTTTTTTTATCAAATATGCTCTAAATACATATCTTGGGGGTATAATACCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTTTTACATTTGTGTTAAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATTTAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCCCCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAACTAATCAACTGCCCCTGCCTGACGTTGTCAAACCCGATGAT]
[+] EMBL CF311065             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCGACGAATTTATCAAATATGCTCTAAATACATATCTTGGGGGTAT ATAACCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTCTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAACAAAGGCCATTGAAATGGGACATAACCAAACTGGAAAATAAAAATATATAGCATATTATATATTGGTATATCATCAACATAGCCCAAAACAAAGCTGGATACTATTATTATAGGCAGCAATCCACCAGCGCGAAGCTTGATCTTAACTTAATTGCCACCAAACTCCTTGCAAC                                                                ]




>consensus_8216#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCAAATATGCTCTAAATAC
ATATCTTGGGGGTATAATACCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATT
GGAGTACTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTTTTACATTTGTGTT
AAAAACAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAATATTTAGCATA
TTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGC
AGCAATCCCCCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCT
GGGGGCTTGTAGGCGATGAAACTAATCAACTGCCCCTGCCTGACGTTGTCAAACCCGATG
AT

consensusID : consensus_8216#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 329
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAACATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGC]

[+] EMBL CF333592             [TTTTTTTTTTTTTTTTTTTTTTTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATAAAAACATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGC]




>consensus_8216#2
TTTTTTTTTTTTTTTTTTTTTTTTTTACAATAAAACCGGCCGGAAAGGGAGGGAAAAAAT
TATTACATATGTGTTAAAAGCAAAGGCCATTGAAATGGTACATAACCAAACTGTAAAATA
AAAACATATAGCATATTATATATTGATATATCATCAACATAGCCCAAAACAAAGCTGCAT
ACTATTATTATAGGCAGCAATCCACCAGCGCGATGCTTGATCTTAGCTTAATTGCCACCA
AACTCCTCGCAACCTGGGGGCTTGTAGGCGATGAAGCTAATCAACTGCACCTGCCTGACG
TTGTCGAAGCCGATGATACGGACAAAGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8216#0      TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGGAAACCATCCATT 60
consensus_8216#1      -----------------TTTTTTTTTTTTTTTTTTTTTTTTTT---------------TT 28
consensus_8216#2      ------------------------------------------------------------
                                                                                  

consensus_8216#0      TTTTTTATTGGCGACAAATTTATCAAATATGCCCTAAATACATATCTTGGGGGTATA-TA 119
consensus_8216#1      TTTTTTTTT---------TTTATCAAATATGCTCTAAATACATATCTTGGGGGTATAATA 79
consensus_8216#2      ------------------------------------------------------------
                                                                                  

consensus_8216#0      GCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAA 179
consensus_8216#1      CCCGGAGCTTTGTTTTCACATATCCTCACCCAACGATAATTGGAGTACTTTTACAATAAA 139
consensus_8216#2      ----------------------TTTTTTTTTTTTTTTTTTT----TTTTTTTACAATAAA 34
                                            *  *          *  **    *  ************

consensus_8216#0      ACCGGCCGGAAAGGGGGGGAAAAAATTTTTACATTTGTGTTAAAAACAAAGGCCATTGAA 239
consensus_8216#1      ACCGGCCGGAAAGGGAGGGAAAAAATTTTTACATTTGTGTTAAAAACAAAGGCCATTGAA 199
consensus_8216#2      ACCGGCCGGAAAGGGAGGGAAAAAATTATTACATATGTGTTAAAAGCAAAGGCCATTGAA 94
                      *************** *********** ****** ********** **************

consensus_8216#0      ATGGGACATAACCAAACTGGAAAATAAAAATATTTAGCATATTATATATTGGTATATCAT 299
consensus_8216#1      ATGGTACATAACCAAACTGTAAAATAAAAATATTTAGCATATTATATATTGATATATCAT 259
consensus_8216#2      ATGGTACATAACCAAACTGTAAAATAAAAACATATAGCATATTATATATTGATATATCAT 154
                      **** ************** ********** ** ***************** ********

consensus_8216#0      CAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCACCAGCGCGAA 359
consensus_8216#1      CAACATAGCCCAAAACAAAGCTGCTTACTTTTATTATAGGCAGCAATCCCCCAGCGCGAT 319
consensus_8216#2      CAACATAGCCCAAAACAAAGCTGCATACTATTATTATAGGCAGCAATCCACCAGCGCGAT 214
                      ************************ **** ******************* ********* 

consensus_8216#0      GCTTGATCTTAACTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCAAAAA 419
consensus_8216#1      GCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGA 379
consensus_8216#2      GCTTGATCTTAGCTTAATTGCCACCAAACTCCTCGCAACCTGGGGGCTTGTAGGCGATGA 274
                      *********** ******************************************* *  *

consensus_8216#0      AACTAATCAACTGCCCCTGCCTGACG----------------------------- 445
consensus_8216#1      AACTAATCAACTGCCCCTGCCTGACGTTGTCAAACCCGATGAT------------ 422
consensus_8216#2      AGCTAATCAACTGCACCTGCCTGACGTTGTCGAAGCCGATGATACGGACAAAGGC 329
                      * ************ ***********