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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1353 fasta sequence
[GACTGTATCTGTACCTACTGAAAAGGGAAAGCCTTCAAAGCAATCACATCAAGAGAAAGAAATACTACCGGCTCCACCAATTGGTCCGTCTTTTGGAGATTTTGTTCCCTGGAAGAGTGATCAGGCAAGTGCAGTACCTGCTCCAGCATGGTCTAGTGAGTCAGCAAAGGTGCAAAGGCCTCTGTCTTTGAGAGATATCCAAAGAGAGCAAGAAAGAAGATCTGCTGTTGCCCAGCAGCAACCACCCTCGCCAACCCCAGCAAAGGTATCTATCAACCAAAGGAATCATGCAAATGTTCCTTCCTGGCAAGCTTCTGGCTGATCTCCATCAAAGGCTGTTGCTCCTGTCCAGATGAGCTCTAATGCTTCCAGTCGTTCCAAATCCAATGCTGAAGATGATTTGTTTTGGGGCCCTTCTGAGCATGCTAAACAAGATAAGAAACAGTCAGAATTCCCAACTCTTTCAAGTCAGACTAGAAGCTCCAGTATTAAAGACCAGTCCCCAATGAACCGTCAAAAATCCCAGGCCAGCAGACTGCCCCTTTCTACTGCTCCTACTGCCAACCACGCTGGTAAAGGGAAAGCAGAGGCAGCAAACAGGCAAACAGAGGCAATGGACTTCAGGGATTGGTGCGAGAGTGAGTGGGCCAGACTCACTGGAACAAATGATACAAGCTTCCTCGAGTTTTGCATCAAGCAACCAACTGTTGAGGCAGAAATGCTCCTCCGGGAGAACCTTGGCTCTTTTGACCGCAATGGCGAGTTCATCGATAAGTTCCTCAACTACAAGGCCTTCCTGTCAACTGATGTGATCGAGATGGCCTTCCAGCTACCTGCCCGTGCTGTCCGTGGGGACGGTGCAGGGCGTGCAAACCATGCCTCTGCAGCCAAAGGAGCCTCCAGCACCGAGACGGAGCTGGACGGAGGAAAGAAGAAAGGGAAGAAGGGGAAGAAGGTGAGTGCAGCAGTTTTAGGATTCAATGTAGTCAGCAACCGTATAATGATGGGTGAGATCCAGAACGTGGAAGATTAGGAACAGCGTATGACGGCACCGTTGTACATACTTTTGTTGCTCACAAAGAGCTGTCGTCTTAGATTTGTTGCAATGGCAACCGAGCTTAATTATGCCGCTCATGAGTAGTTTTTGGTTCATCCC-TTTTTTTTGACGATGCGCTCATGAGGTGATTTTGGTTCCTGTAACTTACAGTAGATTTTCTTCTCATAGAAATTT-CAGTAGGGGTTGATCTGATCAATTTTCGTTTGTTGTTTATGTGAATTATG-CCATGATACATGATGCTAATATAGAATTT-CCTGCTGCAAAAAAAAAAAAAAAAAGAGTTCATCAAAAAAAAA]
[+] EMBL AK072448 [GACTGTATCTGTACCTACTGAAAAGGGAAAGCCTTCAAAGCAATCACATCAAGAGAAAGAAATACTACCGGCTCCACCAATTGGTCCGTCTTTTGGAGATTTTGTTCCCTGGAAGAGTGATCAGGCAAGTGCAGTACCTGCTCCAGCATGGTCTAGTGAGTCAGCAAAGGTGCAAAGGCCTCTGTCTTTGAGAGATATCCAAAGAGAGCAAGAAAGAAGATCTGCTGTTGCCCAGCAGCAACCACCCTCGCCAACCCCAGCAAAGGTATCTATCAACCAAAGGAATCATGCAAATGTTCCTTCCTGGCAAGCTTCTGGCTGATCTCCATCAAAGGCTGTTGCTCCTGTCCAGATGAGCTCTAATGCTTCCAGTCGTTCCAAATCCAATGCTGAAGATGATTTGTTTTGGGGCCCTTCTGAGCATGCTAAACAAGATAAGAAACAGTCAGAATTCCCAACTCTTTCAAGTCAGACTAGAAGCTCCAGTATTAAAGACCAGTCCCCAATGAACCGTCAAAAATCCCAGGCCAGCAGACTGCCCCTTTCTACTGCTCCTACTGCCAACCACGCTGGTAAAGGGAAAGCAGAGGCAGCAAACAGGCAAACAGAGGCAATGGACTTCAGGGATTGGTGCGAGAGTGAGTGGGCCAGACTCACTGGAACAAATGATACAAGCTTCCTCGAGTTTTGCATCAAGCAACCAACTGTTGAGGCAGAAATGCTCCTCCGGGAGAACCTTGGCTCTTTTGACCGCAATGGCGAGTTCATCGATAAGTTCCTCAACTACAAGGCCTTCCTGTCAACTGATGTGATCGAGATGGCCTTCCAGCTACCTGCCCGTGCTGTCCGTGGGGACGGTGCAGGGCGTGCAAACCATGCCTCTGCAGCCAAAGGAGCCTCCAGCACCGAGACGGAGCTGGACGGAGGAAAGAAGAAAGGGAAGAAGGGGAAGAAGGTGAGTGCAGCAGTTTTAGGATTCAATGTAGTCAGCAACCGTATAATGATGGGTGAGATCCAGAACGTGGAAGATTAGGAACAGCGTATGACGGCACCGTTGTACATACTTTTGTTGCTCACAAAGAGCTGTCGTCTTAGATTTGTTGCAATGGCAACCGAGCTTAATTATGCCGCTCATGAGTAGTTTTTGGTTCATCCC TTTTTTTTGACGATGCGCTCATGAGGTGATTTTGGTTCCTGTAACTTACAGTAGATTTTCTTCTCATAGAAATTT CAGTAGGGGTTGATCTGATCAATTTTCGTTTGTTGTTTATGTGAATTATG CCATGATACATGATGCTAATATAGAATTT CCTG ]
[+] EMBL C27968 [ CTGTTGAGGCAGAAATGCTCCTCCGGGAGAACCTTGGCTCTTTTGACCGCAATGGCGAGTTCATCGATAAGTTCCTCAACTACAAGGCCTTCCTGTCAACTGATGTGATCGAGATGGCCTTCCAGCTACCTGCCCGTGCTGTCCGTGGGGACGGTGCAGGGCGTGCAAACCATGCCTCTGCAGCCAAAGGAGCCTCCAGCACCGAGACGGAGCTGGACGGAGGAAAGAAGAAAGGGAAGAAGGGGAAGAAGGTGAGTGCAGCAGTTTTAGGATTCAATGTAGTCAGCAACCGTATAATGATGGGTGAGATCCAGAACGTNGAAGATTAGGAACAGCGTATGACGGCACCGTTGTACATACTTTTGTTGCTCACAAAGAGCTNTCGTCTTAGATTTGTTGCAATNGC ACCGAGCTTAA ]
[+] EMBL AU166934 [ AGCNCCCAGACGGAGCTGGACGGAGGAAANAAGAAAGGGAAGAAGGGGAAGAAGGTGAGTGCAGCAGTTTTAGGATTCAATGTAGTCAGCNNCCGTATAATGATGGGTGAGATCCAGAACGTGGAAGATTAGGAACAGCGTATGACGGCNCCGTTGTACATACTTTTGTTGCTCCCAAAGAGCTGTCGTCTTAGATTTGTTGCAATGGCAACCGAGCTTAATTATGCCGCTCATGAGTAGTTTTTGGTTCATCCC TTTTTTTTGACGATGCGCTCATGAGGTGATTTTGGTTCCTGTAACTTACAGTAGATTTTCTTCTCATAGAAATTTCCAGTAGGGGTTGATCTGATCAATTTTCGTTTGTTGTTTATGTGAATTATGCCCATGATACATGATGCTAATATAGAATTTCCCTGCTGCAAAAAAAAAAAAAAAAA ]
[+] EMBL AU083528 [ GGAAGATTAGGAACAGCGTATGACGGCACCGTTGTACANACTTTTGTTGCTCACAAAGAGCTGTCGTCTTAGATTTGTTGCAATGGCAACCGAGCTTAATTATGCCGCTCATGAGTAGTTTTTGGNTCATCCCTTTTTTTTTGACGATGCGCTCATGAGGTGATTTTGGTNCCTGTAACTTACAGTAGATTTTCTTCTCATAGAAATTT CAGTAGGGGTTGATCTGANCAATTTTCGTTTGTTGTTTATGTGAATTATG CCATGATACATGATGCTAATATAGAATTT CCTGCTGCAAGATCAAAAAGAATTTGAGTTCATCAAAAAAAAA]
consensusID : consensus_8217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence
[CGAGACAGGAGCTGGACGGAGGAAAAAGAAAGAAAAGGGAAAGAAGGGGAAGAAGGTGAGTCGCACACAGTTTTAGGATTCAAATGTAGTCACGCACACCGTATAATGATGGGTGAGATCACAGAACGTGGAAGATTTAGGAACAGGCGTATGACGGCACCGTTGTACAATACTTTTGTTGCTCAACAAAGACCTGTCGTCTTAGATTTGTNCCAATGGCAACCGAGCTTAATTATCCCGCTCATGATATTTTGTTCATCCCTTTTTTTGACAGATGCGCTCATGAGTGATTTTGGTTCCTGTAACTTACAGTAGATTTTCTTCTCATAGAAATTTCAAGTAGGGGTTAAAAAAAAAAA]
[+] EMBL BI807755 [CGAGACAGGAGCTGGACGGAGGAAAAAGAAAGAAAAGGGAAAGAAGGGGAAGAAGGTGAGTCGCACACAGTTTTAGGATTCAAATGTAGTCACGCACACCGTATAATGATGGGTGAGATCACAGAACGTGGAAGATTTAGGAACAGGCGTATGACGGCACCGTTGTACAATACTTTTGTTGCTCAACAAAGACCTGTCGTCTTAGATTTGTNCCAATGGCAACCGAGCTTAATTATCCCGCTCATGATATTTTGTTCATCCCTTTTTTTGACAGATGCGCTCATGAGTGATTTTGGTTCCTGTAACTTACAGTAGATTTTCTTCTCATAGAAATTTCAAGTAGGGGTTAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8217#0 GACTGTATCTGTACCTACTGAAAAGGGAAAGCCTTCAAAGCAATCACATCAAGAGAAAGA 60
consensus_8217#1 ------------------------------------------------------------
consensus_8217#0 AATACTACCGGCTCCACCAATTGGTCCGTCTTTTGGAGATTTTGTTCCCTGGAAGAGTGA 120
consensus_8217#1 ------------------------------------------------------------
consensus_8217#0 TCAGGCAAGTGCAGTACCTGCTCCAGCATGGTCTAGTGAGTCAGCAAAGGTGCAAAGGCC 180
consensus_8217#1 ------------------------------------------------------------
consensus_8217#0 TCTGTCTTTGAGAGATATCCAAAGAGAGCAAGAAAGAAGATCTGCTGTTGCCCAGCAGCA 240
consensus_8217#1 ------------------------------------------------------------
consensus_8217#0 ACCACCCTCGCCAACCCCAGCAAAGGTATCTATCAACCAAAGGAATCATGCAAATGTTCC 300
consensus_8217#1 ------------------------------------------------------------
consensus_8217#0 TTCCTGGCAAGCTTCTGGCTGATCTCCATCAAAGGCTGTTGCTCCTGTCCAGATGAGCTC 360
consensus_8217#1 ------------------------------------------------------------
consensus_8217#0 TAATGCTTCCAGTCGTTCCAAATCCAATGCTGAAGATGATTTGTTTTGGGGCCCTTCTGA 420
consensus_8217#1 ------------------------------------------------------------
consensus_8217#0 GCATGCTAAACAAGATAAGAAACAGTCAGAATTCCCAACTCTTTCAAGTCAGACTAGAAG 480
consensus_8217#1 ------------------------------------------------------------
consensus_8217#0 CTCCAGTATTAAAGACCAGTCCCCAATGAACCGTCAAAAATCCCAGGCCAGCAGACTGCC 540
consensus_8217#1 ------------------------------------------------------------
consensus_8217#0 CCTTTCTACTGCTCCTACTGCCAACCACGCTGGTAAAGGGAAAGCAGAGGCAGCAAACAG 600
consensus_8217#1 ------------------------------------------------------------
consensus_8217#0 GCAAACAGAGGCAATGGACTTCAGGGATTGGTGCGAGAGTGAGTGGGCCAGACTCACTGG 660
consensus_8217#1 ------------------------------------------------------------
consensus_8217#0 AACAAATGATACAAGCTTCCTCGAGTTTTGCATCAAGCAACCAACTGTTGAGGCAGAAAT 720
consensus_8217#1 ------------------------------------------------------------
consensus_8217#0 GCTCCTCCGGGAGAACCTTGGCTCTTTTGACCGCAATGGCGAGTTCATCGATAAGTTCCT 780
consensus_8217#1 ------------------------------------------------------------
consensus_8217#0 CAACTACAAGGCCTTCCTGTCAACTGATGTGATCGAGATGGCCTTCCAGCTACCTGCCCG 840
consensus_8217#1 ------------------------------------------------------------
consensus_8217#0 TGCTGTCCGTGGGGACGGTGCAGGGCGTGCAAACCATGCCTCTGCAGCCAAAGGAGCCTC 900
consensus_8217#1 ------------------------------------------------------------
consensus_8217#0 CAGCACCGAGAC-GGAGCTGGACGGAGGAAAGA-----AGAAAGGGAAGAAGGGGAAGAA 954
consensus_8217#1 ------CGAGACAGGAGCTGGACGGAGGAAAAAGAAAGAAAAGGGAAAGAAGGGGAAGAA 54
****** ****************** * * ** ** **************
consensus_8217#0 GGTGAGT-GCA-GCAGTTTTAGGATTCAA-TGTAGTCA-GCA-ACCGTATAATGATGGGT 1009
consensus_8217#1 GGTGAGTCGCACACAGTTTTAGGATTCAAATGTAGTCACGCACACCGTATAATGATGGGT 114
******* *** **************** ******** *** *****************
consensus_8217#0 GAGATC-CAGAACGTGGAAGATT-AGGAACAG-CGTATGACGGCACCGTTGTACA-TACT 1065
consensus_8217#1 GAGATCACAGAACGTGGAAGATTTAGGAACAGGCGTATGACGGCACCGTTGTACAATACT 174
****** **************** ******** ********************** ****
consensus_8217#0 TTTGTTGCTCA-CAAAGAGCTGTCGTCTTAGATTTGTTGCAATGGCAACCGAGCTTAATT 1124
consensus_8217#1 TTTGTTGCTCAACAAAGACCTGTCGTCTTAGATTTGTNCCAATGGCAACCGAGCTTAATT 234
*********** ****** ****************** *********************
consensus_8217#0 ATGCCGCTCATGAGTAGTTTTTGGTTCATCCCTTTTTTTTGACGATGCGCTCATGAGGTG 1184
consensus_8217#1 ATCCCGCTCATGA----TATTTTGTTCATCCCTTTTTTTGACAGATGCGCTCATGAG-TG 289
** ********** * *** **************** ************** **
consensus_8217#0 ATTTTGGTTCCTGTAACTTACAGTAGATTTTCTTCTCATAGAAATTTCA-GTAGGGGTTG 1243
consensus_8217#1 ATTTTGGTTCCTGTAACTTACAGTAGATTTTCTTCTCATAGAAATTTCAAGTAGGGGTTA 349
************************************************* *********
consensus_8217#0 ATCTGATCAATTTTCGTTTGTTGTTTATGTGAATTATGCCATGATACATGATGCTAATAT 1303
consensus_8217#1 AAAAAAAAAA-------------------------------------------------- 359
* * **
consensus_8217#0 AGAATTTCCTGCTGCAAAAAAAAAAAAAAAAAGAGTTCATCAAAAAAAAA 1353
consensus_8217#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||