cluster # 8221

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Oryza sativa
cluster # 8221 cluster # 8221 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8221#0 length = 623 sequences # 4

consensus_8221#1 length = 612 sequences # 1

consensusID : consensus_8221#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 623
fasta sequence

                              [AGGTCAAGCTCCTCAGCCCAAGGACACGGTCCTCCTCGGCCAGTCTCCGCCTCATCACCTCCCCAAGAGTGACGAGCGCTCGGCGAGGAAGAACGAGAAGATCGCGTCGAGCCATCAGCACAGCACGAGCAGCTCCGCGAGCGACCCGCTCCCGGCGTACCGAGGAGGAGGAGGAGGAGGAGAGCGCCTCCGACGATCAGGACGGGAAGAGGGACCGGCACCGGAGCTCCGGCCCGGCGCGCCGCCGGCCCACGGCGGCAGAGGCCAGGCACTGGCGGCCGTCGCTGCAGAGCATCTCCGAGGCCGCGAGCCAGAGCGGCGGCGGCGGCGGCGGCAGCAGCATCTCTGAATCCGCCGCACAGATGATTCCCCTGTTTGGTGCTGTATTGTCTGGTTTTCTTTTC-TTTTTTTTCTTTCTTCTTCTTTTCTTTTTTTTCTTTTCTCTCTTAGTATAAAGTGCTTGGAAGTTGGAACTACCTCCAAAAGAAAGCAGAAAAAATTGTAAATCAGAGTAATCAGAGCAGGATCAATAGGAAGGAAAGCTTGTTTCATCTCTCATGTAATTTGCATGGTGAAAAACTGAAACTTCAGTGTGCAAAAAAAAAAAAAAAAAAAAAANAAAN]

[+] EMBL BI813757             [AGGTCAAGCTCCTCAGCCCAAGGACACGGTCCTCCTCGGCCAGTCTCCGCCTCATCACCTCCCCAAGAGTGACGAGCGCTCGGCGAGGAAGAACGAGAAGATCGCGTCGAGCCATCAGCACAGCACGAGCAGCTCCGCGAGCGACCCGCTCCCGGCGTACCGAGGAGGAGGAGGAGGAGGAGAGCGCCTCCGACGATCAGGACGGGAAGAGGGACCGGCACCGGAGCTCCGGCCCGGCGCGCCGCCGGCCCACGGCGGCAGAGGCCAGGCACTGGCGGCCGTCGCTGCAGAGCATCTCCGAGGCCGCGAGCCAGAGCGGCGGCGGCGGCGGCGGCAGCAGCATCTCTGAATCCGCCGCACAGATGATTCCCCTGTTTGGTGCTGTATTGTCTGGTTTTCTTTTC TTTTTTTT                                                                                                                                                                                                                   ]
[+] EMBL AU091422             [                                                                                                                                                                                                                                                                       GCC GGCACTGGCGGCCNTCGCTGCAGAGCATCTCCGAGGCCGCGAGCCAGAGCGGCGGCGGCGGCGGCNGCAGCAGCATCTCTGAATCCGCCGCA AGATGATTCCCCTGTTTGGTGCTGTATTGTCTGGTTTTCTTTTC TTTTTTTTCTTTCTTCTTCTTTTCTTTTTTTTCTTTTCTCTCTTAGTATAAAGTGCTTGGAAGTTGGAACTACCTCCAAAAGAAAGCAGAAAAAATTGTAAATCAGAGTAATCAGAGCAGGATCAATAGGAAGGAAAGCTTGTTTCATCTCTCATGTAATTTGCATGGTGAAAAACTGAAACTTCAGTGTGCAAAAAAAAAAAAAAAAAAAAAANAAAN]
[+] EMBL AU083543             [                                                                                                                                                                                                                                                                                                                                                                         GATGATTCCCCTGTTTGGTGCTGTATTGTCTGGTTTTCTTTTCTTTTTTTTTCTTTCTTCTTCTTTTCTTTTTTTTCTTTTCTCTCTTAGTATAAAGTGCTTGGAAGTTGGAACTNCCTCCAAAAGAAAGCAGAAAAAATTGTAAATCAGAGTAATCAGAGCAGGATCAATAGGAAGGAANGCTTGTTTCAaaaaaaaa                                                                ]
[+] EMBL AK107716             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGTGCTTGGAAGTTGGAACTACCTCCAAAAGAAAGCAGAAAAAATTGTAAATCAGAGTAATCAGAGCAGGATCAATAGGAAGGAAAGCTTGT                                                                            ]




>consensus_8221#0
AGGTCAAGCTCCTCAGCCCAAGGACACGGTCCTCCTCGGCCAGTCTCCGCCTCATCACCT
CCCCAAGAGTGACGAGCGCTCGGCGAGGAAGAACGAGAAGATCGCGTCGAGCCATCAGCA
CAGCACGAGCAGCTCCGCGAGCGACCCGCTCCCGGCGTACCGAGGAGGAGGAGGAGGAGG
AGAGCGCCTCCGACGATCAGGACGGGAAGAGGGACCGGCACCGGAGCTCCGGCCCGGCGC
GCCGCCGGCCCACGGCGGCAGAGGCCAGGCACTGGCGGCCGTCGCTGCAGAGCATCTCCG
AGGCCGCGAGCCAGAGCGGCGGCGGCGGCGGCGGCAGCAGCATCTCTGAATCCGCCGCAC
AGATGATTCCCCTGTTTGGTGCTGTATTGTCTGGTTTTCTTTTCTTTTTTTTCTTTCTTC
TTCTTTTCTTTTTTTTCTTTTCTCTCTTAGTATAAAGTGCTTGGAAGTTGGAACTACCTC
CAAAAGAAAGCAGAAAAAATTGTAAATCAGAGTAATCAGAGCAGGATCAATAGGAAGGAA
AGCTTGTTTCATCTCTCATGTAATTTGCATGGTGAAAAACTGAAACTTCAGTGTGCAAAA
AAAAAAAAAAAAAAAAAANAAAN

consensusID : consensus_8221#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence

                              [CTGGGCCAGGTTTCCCGCCTCTTCCCCTCCCAAAAGGGGACGAAGGCCCTCCGGCCGAGGAAGAACGAGAAGATCTGGCGGTGCGAGGTCCTCAGGCAGCAGCCCGAGCAGTTCCGGCGAGGCGACCCGCTTCCCGGGGTAACCCAGGAGGAGGAGGAGGAGGAAAGCGCCTCCGACGATCAGGACGGGAAGAGGGACCGGCCCCGGAGCTTCGGGGCCGGCGCGCCCCCGGCCGCCGGCGGCAGAGGCCGGCACTGGCGGCCGTCGCTGCAGAGCATTTCCGAGGCCCCGAACCAAAACGGCGGCGGCGGCGGCGGCAACAACATTTTTGAATCCCCCGCAAGATGATTCCCCTGTTTGGTGCTGTATTGTCTGGGTTTCCTTTCCTTTTTTTTTCCTTCTTCTTCTTTTCCTTTTTTTTTCTTTTCTCTCTTAGTATAAAGTGCTTGGAAGTTGGAACTACCTCCAAAAGAAAGCAGAAAAAATTGTTAATCAGAGTAATCAGAGCAGGATCAATAGGAAGGAAAGCTTGTTTCATCTCTCATGTAATTTGCATGGTGAAAAACTGAAACTTCAGTGTGCAATTGGGGTTCAGTGAAAAAAAAAAAAAAA]

[-] EMBL CA757100             [CTGGGCCAGGTTTCCCGCCTCTTCCCCTCCCAAAAGGGGACGAAGGCCCTCCGGCCGAGGAAGAACGAGAAGATCTGGCGGTGCGAGGTCCTCAGGCAGCAGCCCGAGCAGTTCCGGCGAGGCGACCCGCTTCCCGGGGTAACCCAGGAGGAGGAGGAGGAGGAAAGCGCCTCCGACGATCAGGACGGGAAGAGGGACCGGCCCCGGAGCTTCGGGGCCGGCGCGCCCCCGGCCGCCGGCGGCAGAGGCCGGCACTGGCGGCCGTCGCTGCAGAGCATTTCCGAGGCCCCGAACCAAAACGGCGGCGGCGGCGGCGGCAACAACATTTTTGAATCCCCCGCAAGATGATTCCCCTGTTTGGTGCTGTATTGTCTGGGTTTCCTTTCCTTTTTTTTTCCTTCTTCTTCTTTTCCTTTTTTTTTCTTTTCTCTCTTAGTATAAAGTGCTTGGAAGTTGGAACTACCTCCAAAAGAAAGCAGAAAAAATTGTTAATCAGAGTAATCAGAGCAGGATCAATAGGAAGGAAAGCTTGTTTCATCTCTCATGTAATTTGCATGGTGAAAAACTGAAACTTCAGTGTGCAATTGGGGTTCAGTGAAAAAAAAAAAAAAA]




>consensus_8221#1
CTGGGCCAGGTTTCCCGCCTCTTCCCCTCCCAAAAGGGGACGAAGGCCCTCCGGCCGAGG
AAGAACGAGAAGATCTGGCGGTGCGAGGTCCTCAGGCAGCAGCCCGAGCAGTTCCGGCGA
GGCGACCCGCTTCCCGGGGTAACCCAGGAGGAGGAGGAGGAGGAAAGCGCCTCCGACGAT
CAGGACGGGAAGAGGGACCGGCCCCGGAGCTTCGGGGCCGGCGCGCCCCCGGCCGCCGGC
GGCAGAGGCCGGCACTGGCGGCCGTCGCTGCAGAGCATTTCCGAGGCCCCGAACCAAAAC
GGCGGCGGCGGCGGCGGCAACAACATTTTTGAATCCCCCGCAAGATGATTCCCCTGTTTG
GTGCTGTATTGTCTGGGTTTCCTTTCCTTTTTTTTTCCTTCTTCTTCTTTTCCTTTTTTT
TTCTTTTCTCTCTTAGTATAAAGTGCTTGGAAGTTGGAACTACCTCCAAAAGAAAGCAGA
AAAAATTGTTAATCAGAGTAATCAGAGCAGGATCAATAGGAAGGAAAGCTTGTTTCATCT
CTCATGTAATTTGCATGGTGAAAAACTGAAACTTCAGTGTGCAATTGGGGTTCAGTGAAA
AAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8221#0      AGGTCAAGCTCCTCAGCCCAAGGACACGGTCCTCCTCGGCCAG--TCTCCGCCTCATCAC 58
consensus_8221#1      ----------------------------------CTGGGCCAGGTTTCCCGCCTCTTCCC 26
                                                        ** ******  *  ******* ** *

consensus_8221#0      CTCCCCAAGAGTGACGAGCGCTC----GGCGAGGAAGAACGAGAAGATC-----GCGTCG 109
consensus_8221#1      CTCCCAAAAGGGGACGAAGGCCCTCCGGCCGAGGAAGAACGAGAAGATCTGGCGGTGCGA 86
                      ***** **  * *****  ** *    * ********************     * *   

consensus_8221#0      AGCCATCAGC--ACAGCACGAGCAGCTCCG-CGAG-CGACCCGCT-CCCGGCGTA-CCGA 163
consensus_8221#1      GGTCCTCAGGCAGCAGCCCGAGCAGTTCCGGCGAGGCGACCCGCTTCCCGGGGTAACCCA 146
                       * * ****    **** ******* **** **** ********* ***** *** ** *

consensus_8221#0      GGAGGAGGAGGAGGAGGAGAGCGCCTCCGACGATCAGGACGGGAAGAGGGACCGGCACCG 223
consensus_8221#1      GGAGGAGGAGGAGGAGGAAAGCGCCTCCGACGATCAGGACGGGAAGAGGGACCGGCCCCG 206
                      ****************** ************************************* ***

consensus_8221#0      GAGCTCCGGC-CCGGCGCGCCGCCGGCCCACGGCGGCAGAGGCCAGGCACTGGCGGCCGT 282
consensus_8221#1      GAGCTTCGGGGCCGGCGCGCCCCCGGCCGCCGGCGGCAGAGGCC-GGCACTGGCGGCCGT 265
                      ***** ***  ********** ******  ************** ***************

consensus_8221#0      CGCTGCAGAGCATCTCCGAGGCCGCGAGCCAGAGCGGCGGCGGCGGCGGCGGCAGCAGCA 342
consensus_8221#1      CGCTGCAGAGCATTTCCGAGGCCCCGAACCAAAACGGCGGCGGCGGCGGCGGCAACAACA 325
                      ************* ********* *** *** * ******************** ** **

consensus_8221#0      TCTCTGAATCCGCCGCACAGATGATTCCCCTGTTTGGTGCTGTATTGTCTGGTTTTCTTT 402
consensus_8221#1      TTTTTGAATCCCCCGCA-AGATGATTCCCCTGTTTGGTGCTGTATTGTCTGGGTTTCCTT 384
                      * * ******* ***** ********************************** **** **

consensus_8221#0      TC--TTTTTTTTCTTTCTTCTTCTTTTC--TTTTTTTTCTTTTCTCTCTTAGTATAAAGT 458
consensus_8221#1      TCCTTTTTTTTTCCTTCTTCTTCTTTTCCTTTTTTTTTCTTTTCTCTCTTAGTATAAAGT 444
                      **  ********* **************  ******************************

consensus_8221#0      GCTTGGAAGTTGGAACTACCTCCAAAAGAAAGCAGAAAAAATTGTAAATCAGAGTAATCA 518
consensus_8221#1      GCTTGGAAGTTGGAACTACCTCCAAAAGAAAGCAGAAAAAATTGTTAATCAGAGTAATCA 504
                      ********************************************* **************

consensus_8221#0      GAGCAGGATCAATAGGAAGGAAAGCTTGTTTCATCTCTCATGTAATTTGCATGGTGAAAA 578
consensus_8221#1      GAGCAGGATCAATAGGAAGGAAAGCTTGTTTCATCTCTCATGTAATTTGCATGGTGAAAA 564
                      ************************************************************

consensus_8221#0      ACTGAAACTTCAGTGTGCAAAAAAAA---AAAAAAAAAAAAAANAAAN 623
consensus_8221#1      ACTGAAACTTCAGTGTGCAATTGGGGTTCAGTGAAAAAAAAAAAAAAA 612
                      ********************         *   ********** ***