cluster # 8222

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Oryza sativa
cluster # 8222 cluster # 8222 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8222#0 length = 593 sequences # 4

consensus_8222#1 length = 288 sequences # 1

consensusID : consensus_8222#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 593
fasta sequence

                              [GTCGACGAGCGAAGAGAACAGAAGCGAGCGAGCAAGGAAGGCGATCCAAGGAAGAAGATGGCGGCGGCGGCGGCCATGGCGATGAAAGATCCGAGCCTGTGGCACAAGGTGGCCGCCATATCCGGGGTTGCTGCCCTTGGACTTGGCACCTATGGCGCGCACATGTTCCGCCCCAAGAACCCCGCGTACAAGGAGGTTTGGCACACTGCGTCCCTCTACCATCTCGTCCACACCGCGGCGTTGCTCGGGGCTCCCATCACCAAGCGCCCCGATGTTTTTGGAGGGCTTCTTACTGCTGGGATTGTTCTCTTCTCTGGAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGATTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCCCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAATGAAATAAAATCAAAAGTACCTTGATGGTTGCACTTTAAAAAAAAAAAAAAAAA]

[+] EMBL CF278931             [GTCGACGAGCGAAGAGAACAGAAGCGAGCGAGCAAGGAAGGCGATCCAAGGAAGAAGATGGCGGCGGCGGCGGCCATGGCGATGAAAGATCCGAGCCTGTGGCACAAGGTGGCCGCCATATCCGGGGTTGCTGCCCTTGGACTTGGCGCCTATGGCGCGCACATGTTCCGCCCCAAGAACCCCGCGTACAAGGAGGTTTGGCACACTGCGTCCCTCTACCATCTCGTCCACACCGCGGCGTTGCTCGGGGCTCCCATCACCAGGCGCCCCGATGTTTTTGGAGGGCTTCTTACTGCTGGGATTGTTCTCTTCTCTGGAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGATTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCCCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAATGAAATA                                               ]
[+] EMBL CB681310             [    ACGAGCGAAGAGAACAGAAGCGAGCGAGCAAGGAAGGCGATCCAAGGAAGAAGATGGCGGCGGCGGCGGCCATGGCGATGAAAGATCCGAGCCTGTGGCACAAGGTGGCCGCCATATCCGGGGTTGCTGCCCTTGGACTTGGCACCTATGGCGCGCACATGTTCCGCCCCAAGAACCCCGCGTACGAGGAGGTTTGGCACACTGCGTCCCTCTACCATCTCGTCCACACCGCGGCGTTGCTCGGGGCTCCCATCACCAAGCGCCCCGATGTTTTTGGAGGGCTTCTTACTGCTGGGATTGTTCTCTTCTCTGGAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGATTATATCGTGTTTTATCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCCCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAATGAAATAAAATCAAAAGTACCTT                               ]
[+] EMBL AK062777             [      GAGCGAAGAGAACAGAAGCGAGCGAGCAAGGAAGGCGATCCAAGGAAGAAGATGGCGGCGGCGGCGGCCATGGCGATGAAAGATCCGAGCCTGTGGCACAAGGTGGCCGCCATATCCGGGGTTGCTGCCCTTGGACTTGGCACCTATGGCGCGCACATGTTCCGCCCCAAGAACCCCGCGTACAAGGAGGTTTGGCACACTGCGTCCCTCTACCATCTCGTCCACACCGCGGCGTTGCTCGGGGCTCCCATCACCAAGCGCCCCGATGTTTTTGGAGGGCTTCTTACTGCTGGGATTGTTCTCTTCTCTGGAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGATTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCCCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAATGAAATAAAATCAAAAGTACCT                                ]
[+] EMBL CA755094             [                                 AAGGAAGGCGATCCAAGGAAGAAGATGGCGGCGGCGGCGGCCATGGCGATGAAAGATCCGAGCCTGTGGCACAAGGTGGCCGCCATATCCGGGGTTGCTGCCCTTGGACTTGGCACCTATGGCGCGCACATGTTCCGCCCCAAGAACCCCGCGTACAAGGAGGTTTGGCACACTGCGTCCCTCTACCATCTCGTCCACACCGCGGCGTTGCTCGGGGCTCCCATCACCAAGCGCCCCGATGTTTTTGGAGGGCTTCTTACTGCTGGGATTGTTCTCTTCTCTGGAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGATTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCCCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAANAGAAATGAAATAAAATCAAAAGTACCTTGATGGTTGCACTTTAAAAAAAAAAAAAAAAA]




>consensus_8222#0
GTCGACGAGCGAAGAGAACAGAAGCGAGCGAGCAAGGAAGGCGATCCAAGGAAGAAGATG
GCGGCGGCGGCGGCCATGGCGATGAAAGATCCGAGCCTGTGGCACAAGGTGGCCGCCATA
TCCGGGGTTGCTGCCCTTGGACTTGGCACCTATGGCGCGCACATGTTCCGCCCCAAGAAC
CCCGCGTACAAGGAGGTTTGGCACACTGCGTCCCTCTACCATCTCGTCCACACCGCGGCG
TTGCTCGGGGCTCCCATCACCAAGCGCCCCGATGTTTTTGGAGGGCTTCTTACTGCTGGG
ATTGTTCTCTTCTCTGGAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCT
TCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGA
TTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGC
CCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAAT
GAAATAAAATCAAAAGTACCTTGATGGTTGCACTTTAAAAAAAAAAAAAAAAA

consensusID : consensus_8222#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [GCCGCTAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGATTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCCCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAATGAAATAAAATCAAAAGTACCTTGATGGTTGAGCGGCCGCGAATTCGCGGCCGCTAGCGG]

[+] EMBL AU225576             [GCCGCTAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGATTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCCCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAATGAAATAAAATCAAAAGTACCTTGATGGTTGAGCGGCCGCGAATTCGCGGCCGCTAGCGG]




>consensus_8222#1
GCCGCTAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCTTCCACGGCACC
GTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGATTATATCGTGT
TTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGCCCTATCAGTTC
ATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAATGAAATAAAATC
AAAAGTACCTTGATGGTTGAGCGGCCGCGAATTCGCGGCCGCTAGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8222#0      GTCGACGAGCGAAGAGAACAGAAGCGAGCGAGCAAGGAAGGCGATCCAAGGAAGAAGATG 60
consensus_8222#1      ------------------------------------------------------------
                                                                                  

consensus_8222#0      GCGGCGGCGGCGGCCATGGCGATGAAAGATCCGAGCCTGTGGCACAAGGTGGCCGCCATA 120
consensus_8222#1      ------------------------------------------------------------
                                                                                  

consensus_8222#0      TCCGGGGTTGCTGCCCTTGGACTTGGCACCTATGGCGCGCACATGTTCCGCCCCAAGAAC 180
consensus_8222#1      ------------------------------------------------------------
                                                                                  

consensus_8222#0      CCCGCGTACAAGGAGGTTTGGCACACTGCGTCCCTCTACCATCTCGTCCACACCGCGGCG 240
consensus_8222#1      ------------------------------------------------------------
                                                                                  

consensus_8222#0      TTGCTCGGGGCTCCCATCACCAAGCGCCCCGATGTTTTTGGAGGGCTTCTTACTGCTGGG 300
consensus_8222#1      ------------------------------------------------------------
                                                                                  

consensus_8222#0      ATTGTTCTCTTCTCTGGAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCT 360
consensus_8222#1      -----------GCCGCTAACGTGCTACACTGTGGCTTATCTTGAAGACAGGAAGTATTCT 49
                                   *   *******************************************

consensus_8222#0      TCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGA 420
consensus_8222#1      TCCACGGCACCGTTGGGTGGCTTTGCGTTCATCGCTGCTTGGGCCAGTCTGCTCTTCTGA 109
                      ************************************************************

consensus_8222#0      TTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGC 480
consensus_8222#1      TTATATCGTGTTTTAGCATGTGAAAACGTATTACATTACTGAATGCTTTGTATTTGGTGC 169
                      ************************************************************

consensus_8222#0      CCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAAT 540
consensus_8222#1      CCTATCAGTTCATGCAATTGACTCGTATGCATCTCTATCATGACCTTCTAGAAAAGAAAT 229
                      ************************************************************

consensus_8222#0      GAAATAAAATCAAAAGTACCTTGATGGTTGCACTTTAAAAAAAAAAAAAAAAA------ 593
consensus_8222#1      GAAATAAAATCAAAAGTACCTTGATGGTTGAGCGGCCGCGAATTCGCGGCCGCTAGCGG 288
                      ******************************  *       **