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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8226#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1568 fasta sequence
[TCACACACCTAGCTAGCAAGTAGGCTCTCTCACTCCACACCCACACTACTCCTCCCAGGCTGCCTGCCTAAAAGGCTAGACCTATCCATCTCTTCCCCCCACTCCTCCAGCATCGCCATCATCCACTGTTCATCCACTCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATCGATCCCTGCAGGTTCTTGCTGCTGCTGCTGCTGCCTTGCTTGCTGTCAAGCATGGCTTGACCACCTGAGAGCGAGGAGAGCATAGCGTAGTACTTGGCTAGCTGCTGTTCAATTCCTCATGGATGATTGGAGGATCGCTAGCTAGGTCGCCCGGATCCACGGACACCTCTCCTCGTCTCGTGCTCGTGCATGCCAAGATCGATCGATCCCAGCTGCTGCTGCGAGTGGAGCAGTGGAGGAGGAGATCGGCTGCTACCTGACCTAGATCGGGAAGCAGATTCATCCGGTTGCATTACGGCGGCGAGGCGAGGGCGAGGATGGATCGTCACCATCACCACCACCACCACCACCACCATCACATGATGTCGGGCGGCGGGCAAGACCCGGCGGCGGGGGACGGCGGCGCCGGCGGCGCCACGCAGGACAGCTTCTTCCTCGGCCCGGCCGCGGCCGCCATGTTCTCCGGCGCCGGGTCGTCGTCGTCGGGCGCGGGGACGTCGGCGGGAGGCGGCGGCGGCGGGCCATCGCCGTCCAGCTCGTCGCCGTCGCTGAGCCGGTACGAGTCGCAGAAGCGGCGGGACTGGAACACGTTCGGGCAGTACCTGCGGAACCACCGGCCGCCGCTGTCCCTGTCGCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTCAAGTACATGGACCAGTTCGGGAAGACGAAGGTGCACACGCCGGTGTGCCCCTTCTACGGCCACCCCAACCCGCCGGCGCCATGCCCGTGCCCGCTCCGCCAAGCCTGGGGCTCCCTCGACGCGCTCATCGGCCGCCTCCGCGCCGCCTACGAGGAGAACGGCGGCACGCCGGAGATGAACCCCTTCGGCGCCCGCGCCGTCCGCCTCTACCTGCGCGAGGTGCGCGAGACGCAGGCCAGGGCGAGGGGGATCAGCTACGAGAAGAAGAAGCGCAAGAAGCCCTCGTCCGCCGGCGCCGGAGCCGGGCCCTCGTCCGAGGGGAGCCCGCCGCCACCCGGCGGCTCGGCCAGCGGCGGCGGCGACACGTCGGCGTCGCCGCAGTTCATCATCCCGTGAGTTCTTCTCGATCCCCATCGCCATCTCCGCATCTCCATTGATCGATCGAGCCTCGCAGCAAGAAATTCCAATCTCCTTGGCAGAAATGCCATCTTGCTTTGCCAGTACAAGGCATCATATCTCTTCTTTCCTCCTGAATTGGTTTCGATCTCTCCCATTTTGCAAAAAAAAGATTTCTCCTCTTTTTAATTTCATCTCTGTCTCGCTTTCTAAGCTAGGACGAAGGTCATGCATGAGTGATTTCAATTGGTAGCTTAATTAAGACAGAAACAACATGTGTTATGTGTACTTGTCCTGGGAACAGATTCCATATATATGCCAAATGCTTT]
[+] EMBL AK111446 [TCACACACCTAGCTAGCAAGTAGGCTCTCTCACTCCACACCCACACTACTCCTCCCAGGCTGCCTGCCTAAAAGGCTAGACCTATCCATCTCTTCCCCCCACTCCTCCAGCATCGCCATCATCCACTGTTCATCCACTCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATCGATCCCTGCAGGTTCTTGCTGCTGCTGCTGCTGCCTTGCTTGCTGTCAAGCATGGCTTGACCACCTGAGAGCGAGGAGAGCATAGCGTAGTACTTGGCTAGCTGCTGTTCAATTCCTCATGGATGATTGGAGGATCGCTAGCTAGGTCGCCCGGATCCACGGACACCTCTCCTCGTCTCGTGCTCGTGCATGCCAAGATCGATCGATCCCAGCTGCTGCTGCGAGTGGAGCAGTGGAGGAGGAGATCGGCTGCTACCTGACCTAGATCGGGAAGCAGATTCATCCGGTTGCATTACGGCGGCGAGGCGAGGGCGAGGATGGATCGTCACCATCACCACCACCACCACCACCACCATCACATGATGTCGGGCGGCGGGCAAGACCCGGCGGCGGGGGACGGCGGCGCCGGCGGCGCCACGCAGGACAGCTTCTTCCTCGGCCCGGCCGCGGCCGCCATGTTCTCCGGCGCCGGGTCGTCGTCGTCGGGCGCGGGGACGTCGGCGGGAGGCGGCGGCGGCGGGCCATCGCCGTCCAGCTCGTCGCCGTCGCTGAGCCGGTACGAGTCGCAGAAGCGGCGGGACTGGAACACGTTCGGGCAGTACCTGCGGAACCACCGGCCGCCGCTGTCCCTGTCGCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTCAAGTACATGGACCAGTTCGGGAAGACGAAGGTGCACACGCCGGTGTGCCCCTTCTACGGCCACCCCAACCCGCCGGCGCCATGCCCGTGCCCGCTCCGCCAAGCCTGGGGCTCCCTCGACGCGCTCATCGGCCGCCTCCGCGCCGCCTACGAGGAGAACGGCGGCACGCCGGAGATGAACCCCTTCGGCGCCCGCGCCGTCCGCCTCTACCTGCGCGAGGTGCGCGAGACGCAGGCCAGGGCGAGGGGGATCAGCTACGAGAAGAAGAAGCGCAAGAAGCCCTCGTCCGCCGGCGCCGGAGCCGGGCCCTCGTCCGAGGGGAGCCCGCCGCCACCCGGCGGCTCGGCCAGCGGCGGCGGCGACACGTCGGCGTCGCCGCAGTTCATCATCCCGTGAGTTCTTCTCGATCCCCATCGCCATCTCCGCATCTCCATTGATCGATCGAGCCTCGCAGCAAGAAATTCCAATCTCCTTGGCAGAAATGCCATCTTGCTTTGCCAGTACAAGGCATCATATCTCTTCTTTCCTCCTGAATTGGTTTCGATCTCTCCCATTTTGCAAAAAAAAGATTTCTCCTCTTTTTAATTTCATCTCTGTCTCGCTTTCTAAGCTAGGACGAAGGTCATGCATGAGTGATTTCAATTGGTAGCTTAATTAAGACAGAAACAACATGTGTTATGTGTACTTGTCCTGGGAACAGATTCCATATATATGCCAAATGCTTT]
consensusID : consensus_8226#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1434 fasta sequence
[GTTTCTTGTGTTGATCTGAGTTTGATTTGATTTTCAGTTTTGCACCATGCGATCGATCGAGAGTGTGTTGTTGTTCTTGTTTTGGTTCTTTTCTAGTAGTATCAGTTGCACTGATTAATTAATTAATATAGCTTGTGTTTTGATTCGGTAGACACGGCTATCTGCAGCGTATCAAAGCTTTTCCTGTTGCACACCACACCTACCATGAGTTCCTTTCAATCAATGCCTCTCTCTCTCTCTCTCGATCTGCAGATCAAATATACAATTCGCCTTCTCGATCGAGTAGTTGATGAACAGTGTTCCCCTTGATTGATTGATCACCATTATTATAACATCCTCTTTCTTTCTTCTCACTGTACCACACACTTCGATCTCTGCAGCCTGAACCAAGCAAGAATTATAGTATTAGAACAACTCCAGATATCTCTAAAGCTGATGATCTAGCTCTACTTTCTGCATCGATCGATCTCGTTAATTAGGGTTAGATCACCGGCCGGCACAGTGCATCTTCAAATAAGCATCATTTGCTCTTTGAGTGATACAGTACTATGCTTCCCCTTCTGCTGATCTGCTCTCTCTGTCCCTGCATGTATTACAGTTAATTTGTGTCAGTTCTTGCTTGGCTGAGCTAAGTTCACGCCAGATCTTCAAAACCCCAATCTTGCTACTGTGTTTTGTTTTTCTTGGACCACCCAGTTATCTGCCTTTTTTTATTTTTTTCCAAATCTCACAAAGCTTTGCACGTCAAACATATTAGAAGAAGCATTGAGATAACTTCCAGATTAGCTGAAACCCTAGTTCTTTCTCATTCTGAATCATCCACAGTATGTCAAATTCTCAATAGCATTAGCTGCTTGGTTTGACCATTGGTCATGGGGTTGACGAACTGACACGCAGCAATTAATGGTTCATGTTTGGCAGGTGAGAGATTGAGGAGATGGACATGATCGGCATGGCGTCGCCGGCGGAAAGCCCCGGCGGCGGCGGCACGGCCAGGCCGAGCAGGTACGAGTCGCAGAAGCGGCGGGACTGGCAGACGTTCGGGCAGTATCTGCGCAACCACCGGCCGCCGCTGGAGCTCTCCCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTCCGGTACCTGGACCAGTTCGGGAAGACGAAGGTGCACGCCCATGGCTGCCCCTTCTTCGGCCACCCCTCGCCGCCGGCGCCGTGCCCCTGCCCGCTCCGCCAGGCGTGGGGCAGCCTCGACGCCCTCGTCGGCCGCCTCCGCGCCGCCTTCGAGGAGCACGGCGGCCGCCCTGAGTCCAACCCCTTCGGCGCCCGCGCCGTCCGCCTCTACCTCCGCGACATCCGCGACACGCAGTCCAAGGCCCGCGGCATCGCCTACGAGAAGAAGCGCCGCAAGCGCGCCGCCGCCTCCCACACCAAGCAGAAGCAGCAGCAGCA]
[+] EMBL AK106854 [GTTTCTTGTGTTGATCTGAGTTTGATTTGATTTTCAGTTTTGCACCATGCGATCGATCGAGAGTGTGTTGTTGTTCTTGTTTTGGTTCTTTTCTAGTAGTATCAGTTGCACTGATTAATTAATTAATATAGCTTGTGTTTTGATTCGGTAGACACGGCTATCTGCAGCGTATCAAAGCTTTTCCTGTTGCACACCACACCTACCATGAGTTCCTTTCAATCAATGCCTCTCTCTCTCTCTCTCGATCTGCAGATCAAATATACAATTCGCCTTCTCGATCGAGTAGTTGATGAACAGTGTTCCCCTTGATTGATTGATCACCATTATTATAACATCCTCTTTCTTTCTTCTCACTGTACCACACACTTCGATCTCTGCAGCCTGAACCAAGCAAGAATTATAGTATTAGAACAACTCCAGATATCTCTAAAGCTGATGATCTAGCTCTACTTTCTGCATCGATCGATCTCGTTAATTAGGGTTAGATCACCGGCCGGCACAGTGCATCTTCAAATAAGCATCATTTGCTCTTTGAGTGATACAGTACTATGCTTCCCCTTCTGCTGATCTGCTCTCTCTGTCCCTGCATGTATTACAGTTAATTTGTGTCAGTTCTTGCTTGGCTGAGCTAAGTTCACGCCAGATCTTCAAAACCCCAATCTTGCTACTGTGTTTTGTTTTTCTTGGACCACCCAGTTATCTGCCTTTTTTTATTTTTTTCCAAATCTCACAAAGCTTTGCACGTCAAACATATTAGAAGAAGCATTGAGATAACTTCCAGATTAGCTGAAACCCTAGTTCTTTCTCATTCTGAATCATCCACAGTATGTCAAATTCTCAATAGCATTAGCTGCTTGGTTTGACCATTGGTCATGGGGTTGACGAACTGACACGCAGCAATTAATGGTTCATGTTTGGCAGGTGAGAGATTGAGGAGATGGACATGATCGGCATGGCGTCGCCGGCGGAAAGCCCCGGCGGCGGCGGCACGGCCAGGCCGAGCAGGTACGAGTCGCAGAAGCGGCGGGACTGGCAGACGTTCGGGCAGTATCTGCGCAACCACCGGCCGCCGCTGGAGCTCTCCCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTCCGGTACCTGGACCAGTTCGGGAAGACGAAGGTGCACGCCCATGGCTGCCCCTTCTTCGGCCACCCCTCGCCGCCGGCGCCGTGCCCCTGCCCGCTCCGCCAGGCGTGGGGCAGCCTCGACGCCCTCGTCGGCCGCCTCCGCGCCGCCTTCGAGGAGCACGGCGGCCGCCCTGAGTCCAACCCCTTCGGCGCCCGCGCCGTCCGCCTCTACCTCCGCGACATCCGCGACACGCAGTCCAAGGCCCGCGGCATCGCCTACGAGAAGAAGCGCCGCAAGCGCGCCGCCGCCTCCCACACCAAGCAGAAGCAGCAGCAGCA]
consensusID : consensus_8226#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1217 fasta sequence
[CACACACTCCGTCCCAACAAGCTACTCTTCTTCTTCTTCTACCTCCTCACCCCTACCCATTCTCTCTCTCTCTCTCTCTCTAGCTAGCTAGAGCAGCAACCAACCATGGAGCCTTCCCCCGACGCGCCACGCGCCGGGGCAGCGGAAGAGCAGCCTGGTCCGTCCTCCTCGGCGTCGGCGCCGGCGCCCGCGGCGTCGTCGAACGAAGAAGAAGGGAGACATCAGTCGCAGGCGCAGCAGCAGGTGCAAGAAGCGCAGCCGCAGCCGCTGGCGCAGCAGGCGCCGGCGGCGGCGGGGCTGAGCAGGTACGAGTCGCAGAAGCGGCGGGACTGGAACACGTTCCTGCAGTACCTGCGGAACCACAAGCCGCCGCTGACGCTGCCGCGGTGCAGCGGCGCGCACGTCATCGAGTTCCTCAAGTACCTGGACCAGTTCGGGAAGACCAAGGTGCACGCCGACGGGTGCGCCTACTTCGGCGAGCCCAACCCGCCGGCGCCGTGCGCCTGCCCGCTCCGCCAGGCGTGGGGCAGCCTCGACGCGCTCATCGGCCGCCTCCGCGCCGCCTACGAGGAGTCCGGCGGCCGCCCGGAGTCCAACCCCTTCGCCGCCCGCGCCGTCCGCATCTACCTCCGCGAGGTCCGCGAGGCGCAGGCCAAGGCGCGTGGGATCCCCTACGAGAAGAAGCGCAAGCGTGGCGCCGCCGCCGCCGCCGCCGCCCCTCCCGTCGTCGTCGCGCCGCCCCCCGTCGTCACCGCGCCCGACGACGCCACCGGGACGTCGGGAGGCGCCGGCGAGGACGACGACGACGACGAGGCCACCCACTCCGGCGAGCAGCAGGACACCACGCCGGCGGCCTCTCCTACTACTCCTCCGGCAACAAGTGTCGGTACTACCACCGCGGCGGCGACTGCGGCGGCGGCGAAGGGAAGTGCGGCGAAAGGATCGGCGACGAGTTCGTGATAAGTGTAGAGAAATCATTTGCCTCCCTTTCAATCCCCTCATCACCCTCCAAATTCTAATCCCCTGCAGCATCATCATCATCATCTTAATTTTTAGTGGTTGATTAATTATTATGATTATTACTGTTATTATTTGTTGGTATGAGAGTGGAGAGGCCTAATTAAGGGGGTTTGTAGGATAATGTTAGGATCGAGTACATAAAAGGCTGCTAAATTAACATGCAGAAAATTTCAATTTGAAGAAATAAGAGGAAGACA]
[+] EMBL AK106384 [CACACACTCCGTCCCAACAAGCTACTCTTCTTCTTCTTCTACCTCCTCACCCCTACCCATTCTCTCTCTCTCTCTCTCTCTAGCTAGCTAGAGCAGCAACCAACCATGGAGCCTTCCCCCGACGCGCCACGCGCCGGGGCAGCGGAAGAGCAGCCTGGTCCGTCCTCCTCGGCGTCGGCGCCGGCGCCCGCGGCGTCGTCGAACGAAGAAGAAGGGAGACATCAGTCGCAGGCGCAGCAGCAGGTGCAAGAAGCGCAGCCGCAGCCGCTGGCGCAGCAGGCGCCGGCGGCGGCGGGGCTGAGCAGGTACGAGTCGCAGAAGCGGCGGGACTGGAACACGTTCCTGCAGTACCTGCGGAACCACAAGCCGCCGCTGACGCTGCCGCGGTGCAGCGGCGCGCACGTCATCGAGTTCCTCAAGTACCTGGACCAGTTCGGGAAGACCAAGGTGCACGCCGACGGGTGCGCCTACTTCGGCGAGCCCAACCCGCCGGCGCCGTGCGCCTGCCCGCTCCGCCAGGCGTGGGGCAGCCTCGACGCGCTCATCGGCCGCCTCCGCGCCGCCTACGAGGAGTCCGGCGGCCGCCCGGAGTCCAACCCCTTCGCCGCCCGCGCCGTCCGCATCTACCTCCGCGAGGTCCGCGAGGCGCAGGCCAAGGCGCGTGGGATCCCCTACGAGAAGAAGCGCAAGCGTGGCGCCGCCGCCGCCGCCGCCGCCCCTCCCGTCGTCGTCGCGCCGCCCCCCGTCGTCACCGCGCCCGACGACGCCACCGGGACGTCGGGAGGCGCCGGCGAGGACGACGACGACGACGAGGCCACCCACTCCGGCGAGCAGCAGGACACCACGCCGGCGGCCTCTCCTACTACTCCTCCGGCAACAAGTGTCGGTACTACCACCGCGGCGGCGACTGCGGCGGCGGCGAAGGGAAGTGCGGCGAAAGGATCGGCGACGAGTTCGTGATAAGTGTAGAGAAATCATTTGCCTCCCTTTCAATCCCCTCATCACCCTCCAAATTCTAATCCCCTGCAGCATCATCATCATCATCTTAATTTTTAGTGGTTGATTAATTATTATGATTATTACTGTTATTATTTGTTGGTATGAGAGTGGAGAGGCCTAATTAAGGGGGTTTGTAGGATAATGTTAGGATCGAGTACATAAAAGGCTGCTAAATTAACATGCAGAAAATTTCAATTTGAAGAAATAAGAGGAAGACA]
consensusID : consensus_8226#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1206 fasta sequence
[TAGTACCTCCGAGCTAAGCCACTCCACCGCCGATTGATCGCGTCACGGCGGCGCAGCCCGGCCGCCAGCGTCGTCCGTCCGATCGGCAGATCTGAGGAGGGAGAAAGGTTTGCTGCTGCTTGTGCTAGGACGTCATGCAGGGAGGCGGCGGCGGGGATAGCTCCGGCGGCGGCGGCGGCGAGGCGCCGCGGCCGAGCAGGTACGAGTCGCAGAAGCGGCGGGACTGGCACACGTTCGGGCAGTACCTGCGCAACCACCGGCCGCCGCTGGAGCTGTCGCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTCCGGTACCTGGACCAGTTCGGGAAGACGAAGGTGCACGCCGCGGGGTGCCCCTTCTTCGGCCACCCCTCGCCGCCGGCGCCGTGCCCGTGCCCGCTCCGCCAGGCGTGGGGCAGCCTCGACGCGCTCGTCGGCCGCCTCCGCGCCGCCTTCGAGGAGCACGGCGGCCGCCCCGAGGCCAACCCCTTCGGCGCCCGCGCCGTCCGCCTCTACCTCCGCGAGGTCCGCGACAGCCAGGCCAAGGCCCGCGGCATCGCCTACGAGAAGAAGCGCCGCAAGCGCCCGCCCACCTCCTCGTCTTCGTCTCAGGCCGCCGCCGCCGCCGCCGCCGCCACCTCCCCGGCGAGCCCAGCCGCTAGCCCGACGCCGCCACCGCCACCGCCGACGGAGAGATCAGCCGACGTGCGGCCGATGCCACCGGAGGGCCACTTCTTCATCCCGCACCCACACTTCATGCACGGACACTTCCTCGTACCGGGCGGCGACGCCGACCACCACCACCAGGTCTCCAACGCCGGCAATGGCGGCAACACCAACACCAACACCAACACCAACACCGGCGGCGGCGGCGGCAACGGCGACGAGATGGCGGTGGCGATGGCGGCGGTGGCGGAGGCGCACGCGGCGGGGTGCATGCTGCCGCTGTCCGTGTTTAACTAGCAGTAATATTCAGAGATCAGCAGCATATAGCAAAAATCAAGGTAGGGCTTAATCAAATCCGGGGGAGGGTTTTAATTAATGGATTACTCCAACCTTAGTTCGTTAAAACCGATCGATCGATCGATGGATCGATGCGTCTCATCATGATGGAATGATGGATTCGATTGGATTCGATTCGATCGAGCTATCAACGTAGCGCTACTGTGTATGTACTGTTTGTGTTCTTATCAAACTCTAC]
[+] EMBL AK068794 [TAGTACCTCCGAGCTAAGCCACTCCACCGCCGATTGATCGCGTCACGGCGGCGCAGCCCGGCCGCCAGCGTCGTCCGTCCGATCGGCAGATCTGAGGAGGGAGAAAGGTTTGCTGCTGCTTGTGCTAGGACGTCATGCAGGGAGGCGGCGGCGGGGATAGCTCCGGCGGCGGCGGCGGCGAGGCGCCGCGGCCGAGCAGGTACGAGTCGCAGAAGCGGCGGGACTGGCACACGTTCGGGCAGTACCTGCGCAACCACCGGCCGCCGCTGGAGCTGTCGCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTCCGGTACCTGGACCAGTTCGGGAAGACGAAGGTGCACGCCGCGGGGTGCCCCTTCTTCGGCCACCCCTCGCCGCCGGCGCCGTGCCCGTGCCCGCTCCGCCAGGCGTGGGGCAGCCTCGACGCGCTCGTCGGCCGCCTCCGCGCCGCCTTCGAGGAGCACGGCGGCCGCCCCGAGGCCAACCCCTTCGGCGCCCGCGCCGTCCGCCTCTACCTCCGCGAGGTCCGCGACAGCCAGGCCAAGGCCCGCGGCATCGCCTACGAGAAGAAGCGCCGCAAGCGCCCGCCCACCTCCTCGTCTTCGTCTCAGGCCGCCGCCGCCGCCGCCGCCGCCACCTCCCCGGCGAGCCCAGCCGCTAGCCCGACGCCGCCACCGCCACCGCCGACGGAGAGATCAGCCGACGTGCGGCCGATGCCACCGGAGGGCCACTTCTTCATCCCGCACCCACACTTCATGCACGGACACTTCCTCGTACCGGGCGGCGACGCCGACCACCACCACCAGGTCTCCAACGCCGGCAATGGCGGCAACACCAACACCAACACCAACACCAACACCGGCGGCGGCGGCGGCAACGGCGACGAGATGGCGGTGGCGATGGCGGCGGTGGCGGAGGCGCACGCGGCGGGGTGCATGCTGCCGCTGTCCGTGTTTAACTAGCAGTAATATTCAGAGATCAGCAGCATATAGCAAAAATCAAGGTAGGGCTTAATCAAATCCGGGGGAGGGTTTTAATTAATGGATTACTCCAACCTTAGTTCGTTAAAACCGATCGATCGATCGATGGATCGATGCGTCTCATCATGATGGAATGATGGATTCGATTGGATTCGATTCGATCGAGCTATCAACGTAGCGCTACTGTGTATGTACTGTTTGTGTTCTTATCAAACTCTAC]
consensusID : consensus_8226#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence
[GCCGCTTAGAAACACAGGCGATCGATATAATGCAGTACGAACGAAGCACCTTCTACTGGTACTTCCGACGACAGAGTTCGTGAACAATTAGCAGCACAAATAATTAAAACCCATTACCATGCACATGCATGCATACGCGAACTTATAGTGCACATAAAATATATGTGCTCGATCTGGCATACCGACCAAATAGGAGAGCGTAGCGTAGGTAGATCGGCCGGCCGGCTCGGTCGCCCGCTCTCAGCAGGCGGCGCCGGCAGGCGGTGGAGGCGGCGGGTGATGCTGGTGGCCGTGAAGGCCACTGCTGTCGCCGCCCTGCAGCTGCTGCTGCTGCGGCTTCTTGCGCTTCTTCTTCTCGTAGCTGACGCCGCGGGCGCGCGCCTGGTGCTCGCGGACCTCGCGGAGGTAGAGGCGGACGGCGCGCGCGGCGAAGGGGTTGGACTCGGGCGGGCGCCGTACTCCTCGAA]
[+] EMBL AU225572 [GCCGCTTAGAAACACAGGCGATCGATATAATGCAGTACGAACGAAGCACCTTCTACTGGTACTTCCGACGACAGAGTTCGTGAACAATTAGCAGCACAAATAATTAAAACCCATTACCATGCACATGCATGCATACGCGAACTTATAGTGCACATAAAATATATGTGCTCGATCTGGCATACCGACCAAATAGGAGAGCGTAGCGTAGGTAGATCGGCCGGCCGGCTCGGTCGCCCGCTCTCAGCAGGCGGCGCCGGCAGGCGGTGGAGGCGGCGGGTGATGCTGGTGGCCGTGAAGGCCACTGCTGTCGCCGCCCTGCAGCTGCTGCTGCTGCGGCTTCTTGCGCTTCTTCTTCTCGTAGCTGACGCCGCGGGCGCGCGCCTGGTGCTCGCGGACCTCGCGGAGGTAGAGGCGGACGGCGCGCGCGGCGAAGGGGTTGGACTCGGGCGGGCGCCGTACTCCTCGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8226#2 ------------------------------------------------------------
consensus_8226#3 ------------------------------------------------------------
consensus_8226#1 ------------------------------------------------------------
consensus_8226#0 TCACACACCTAGCTAGCAAGTAGGCTCTCTCACTCCACACCCACACTACTCCTCCCAGGC 60
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 ------------------------------------------------------------
consensus_8226#3 ------------------------------------------------------------
consensus_8226#1 ------------------------------------------------------------
consensus_8226#0 TGCCTGCCTAAAAGGCTAGACCTATCCATCTCTTCCCCCCACTCCTCCAGCATCGCCATC 120
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 ------------------------------------------------------------
consensus_8226#3 ------------------------------------------------------------
consensus_8226#1 ------------------------------------------------------------
consensus_8226#0 ATCCACTGTTCATCCACTCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATCGATCC 180
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 ------------------------------------------------------------
consensus_8226#3 ------------------------------------------------------------
consensus_8226#1 ------------------------------------------------------------
consensus_8226#0 CTGCAGGTTCTTGCTGCTGCTGCTGCTGCCTTGCTTGCTGTCAAGCATGGCTTGACCACC 240
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 ------------------------------------------------------------
consensus_8226#3 ------------------------------------------------------------
consensus_8226#1 ------------------------------------------------------------
consensus_8226#0 TGAGAGCGAGGAGAGCATAGCGTAGTACTTGGCTAGCTGCTGTTCAATTCCTCATGGATG 300
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 ------------------------------------------------------------
consensus_8226#3 ------------------------------------------------------------
consensus_8226#1 --------------------------------------------------------GTTT 4
consensus_8226#0 ATTGGAGGATCGCTAGCTAGGTCGCCCGGATCCACGGACACCTCTCCTCGTCTCGTGCTC 360
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 ---------------------------------------CACACACTCCGTCCCAACAAG 21
consensus_8226#3 ------------------------------------------------------------
consensus_8226#1 CTTGTGTTGATCTGAGTTTGATTTGATTTTCAGTTTTGCACCATGCGATCGATCGAGAGT 64
consensus_8226#0 GTGCATGCCAAGATCGATCGATCCCAGCTGCTGCTGCGAGTGGAGCAGTGGAGGAGGAGA 420
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 CTACTCTTCTTCTTCTTCTACCTCCTCACCCCTACCCATTCTCTCTCTCTCTCTCTCTCT 81
consensus_8226#3 ------------------------------------------------------------
consensus_8226#1 GTGTTGTTGTTCTTGTTTTGGTTCTTTTCTAGTAGTATCAGTTGCACTGATTAATTAATT 124
consensus_8226#0 TCGGCTGCTACCTGACCTAGATCGGGAAGCAGATTCATCCGGTTGCATTACGGCGGCGAG 480
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 AGC-TAGCTAGAGCAGCAACCAACCATGGA-GCCTTC-CCCCGACG--CGCCACGCGCCG 136
consensus_8226#3 -------------TAGTACCTCCGAGCTAA-GCCACT-CCAC------CGCCGATTGATC 39
consensus_8226#1 AATATAGCTTGTGTTTTGATTCGGTAGACACGGCTAT-CTGCAGCG--TATCAAA-GCTT 180
consensus_8226#0 GCGAGGGCGAGGATGGATCGTCACCATCACCACCACCACCACCACCACCATCACATGATG 540
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 GGGCAGCGGAAGAGCAGCCTGGTCCG---------TCCTCCTCGGCGTCGGCGC------ 181
consensus_8226#3 GCGTCACGGCGGCGCAGCCCGGCC-------------------GCCAGCGTCGT------ 74
consensus_8226#1 TTCCTGTTGCACACCACACCTACCATGAGT-----TCCTTTCAATCAATGCCTC------ 229
consensus_8226#0 TCG-GGCGGCGGGCAAGACCCGGCGGCGGGGGACGGCGGCGCCGGCGGCGCCACGCAGGA 599
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 CGGCGCCCGCGGCGTCGTCGAACGAAGAAGAAGGGAGACATCAGTCGCAGGCGCAGCAGC 241
consensus_8226#3 CCGTCCGATCGGCAGATCTGAGGAGGGAGAAAGGTTTGCTGCTGCTTGTGCTAGGACGTC 134
consensus_8226#1 TCTCTCTCTCTCTCGATCTGCAGATCAAATATACAATTCGCCTTCTCGATCGAGTAGTTG 289
consensus_8226#0 CAGCTTCTTCCTCGGCCCGGCCGCGGCCGCCATGTTCTCCGGCGCCGGGTCGTCGTCGTC 659
consensus_8226#4 -----------------------------------------------------GCCGCTT 7
consensus_8226#2 AGGTGCAAGAAGCGC--------AGCCGCAGCCGCTGGCGCAGCAGGCGCCGGCG---GC 290
consensus_8226#3 ATGCAGGGAGGCGGC--------GGCGGGGATAGCTCCGGCGGC-GGCGGCGGCGAG-GC 184
consensus_8226#1 ATGAACAGTGTTCCCCTTGATTGATTGATCACCATTATTATAACATCCTCTTTCTTTCTT 349
consensus_8226#0 GGGCGCGGGGACGTCGGCGGG-AGGCGGCGGCGGCGGGC-CATCGCCGTCCAGCTCG-TC 716
consensus_8226#4 AGAAACACAGGCGATCGATATAATGCAGT-ACGAACGAAGCACCTTCTACTGGTACTTCC 66
*
consensus_8226#2 GGCGGGGCTGAGCAGGTACGAGTCGCAGAAGC---GGCGGGA--CTGGAAC-ACGTTCCT 344
consensus_8226#3 GCCGCGGCCGAGCAGGTACGAGTCGCAGAAGC---GGCGGGA--CTGGCAC-ACGTTCGG 238
consensus_8226#1 CTCACTGTACCACACACTTCGATCTCTGCAGCCTGAACCAAG--CAAGAATTATAGTATT 407
consensus_8226#0 GCCGTCGCTGAGCCGGTACGAGTCGCAGAAGC---GGCGGGA--CTGGAAC-ACGTTCGG 770
consensus_8226#4 GACGACAGAGTTCGTGAACAATTAGCAGCACAAATAATTAAAACCCATTACCATGCACAT 126
* * * * * * * * *
consensus_8226#2 GCAGTACCTGCGGA-ACCAC--AAGCCGCCGCTGACGCTGC-CGCGGTGCAGCGG--CGC 398
consensus_8226#3 GCAGTACCTGCGCA-ACCAC--CGGCCGCCGCTGGAGCTGT-CGCGGTGCAGCGG--CGC 292
consensus_8226#1 AGAACAACTCCAGATATCTCTAAAGCTGATGATCTAGCTCTACTTTCTGCATCGAT-CGA 466
consensus_8226#0 GCAGTACCTGCGGA-ACCAC--CGGCCGCCGCTGTCCCTGT-CGCGGTGCAGCGG--CGC 824
consensus_8226#4 GCA-TGCATACGCGAACTTATAGTGCACATAAAATATATGTGCTCGATCTGGCATACCGA 185
* * * * ** * * * * **
consensus_8226#2 GCACGTCA--TCGAGTTCCTCAAGTACCTGGACCAGTTCG-------GGAAGACCAAGGT 449
consensus_8226#3 GCACGTGC--TGGAGTTCCTCCGGTACCTGGACCAGTTCG-------GGAAGACGAAGGT 343
consensus_8226#1 TCTCGTTAATTAGGGTTAGATCACCGGCCGGCACAGTGCATCTTCAAATAAGCATCATTT 526
consensus_8226#0 GCACGTGC--TGGAGTTCCTCAAGTACATGGACCAGTTCG-------GGAAGACGAAGGT 875
consensus_8226#4 CCAAATAGGAGAGCGTAGCGTAGGTAGATCGGCCGGCCGG-------CTCGGTCGCCCGC 238
* * * ** * * * *
consensus_8226#2 GCACGCCGACGGGTGC----GCCTACTTCGGCGAGC-CCAACC-CGCCGGCG-CCGTGCG 502
consensus_8226#3 GCACGCCGCGGGGTGC----CCCTTCTTCGGCCACC-CCTCGC-CGCCGGCG-CCGTGCC 396
consensus_8226#1 GCTCTTTGAGTGATACAGTACTATGCTTCCCCTTCTGCTGATC-TGCTCTCT-CTGTCCC 584
consensus_8226#0 GCACACGCCGGTGTGC----CCCTTCTACGGCCACC-CCAACC-CGCCGGCG-CCATGCC 928
consensus_8226#4 TCTCAGCAGGCGGCGCCG--GCAGGCGGTGGAGGCGGCGGGTGATGCTGGTGGCCGTGAA 296
* * * * * ** * *
consensus_8226#2 CCTGCCCGCTCCGCCAGGCGTGGGGCAGCCTCGACGCGCTCATCGGCCGCCTCCGCGCC- 561
consensus_8226#3 CGTGCCCGCTCCGCCAGGCGTGGGGCAGCCTCGACGCGCTCGTCGGCCGCCTCCGCGCC- 455
consensus_8226#1 TGCATGTATTACAGTTAATTTGTGTCAGTTCTTGCTTGGCTG--AGCTAAGTTCACGCCA 642
consensus_8226#0 CGTGCCCGCTCCGCCAAGCCTGGGGCTCCCTCGACGCGCTCATCGGCCGCCTCCGCGCC- 987
consensus_8226#4 GGCCACTGCTGTCGCCGCCCTGCAGCTGCTGCTGC-TGC-----GGCTTCTTGCGCTTC- 349
* ** * * * ** * * * *
consensus_8226#2 GCCTACGAGGAGTCCGGCG--GCCGCCCGGAGTCCAACCCCTTCGCCGCCCGCGCCGTCC 619
consensus_8226#3 GCCTTCGAGGAGCACGGCG--GCCGCCCCGAGGCCAACCCCTTCGGCGCCCGCGCCGTCC 513
consensus_8226#1 GATCTTCAAAACCCCAATCTTGCTACTGTGTTTTGTTTTTCTTGGACCACCCAGTTATCT 702
consensus_8226#0 GCCTACGAGGAGAACGGCG--GCACGCCGGAGATGAACCCCTTCGGCGCCCGCGCCGTCC 1045
consensus_8226#4 TTCTTCTCGTAGC-TGACGCCGCGGGCGCGCGCCTGGTGCTCGCGGACCTCGCGGAGGTA 408
* ** * * * *
consensus_8226#2 GCATCTACCTCCGCGAGGTCCGCGAGGCGCAGGCCAAGGCGCGTGGGATCCCCTACGAGA 679
consensus_8226#3 GCCTCTACCTCCGCGAGGTCCGCGACAGCCAGGCCAAGGCCCGCGGCATCGCCTACGAGA 573
consensus_8226#1 GCCTTTTTTTATTTTTT-TCCAAATCTCACAAAGCTTTGCACGTCAAACATATTAGAAGA 761
consensus_8226#0 GCCTCTACCTGCGCGAGGTGCGCGAGACGCAGGCCAGGGCGAGGGGGATCAGCTACGAGA 1105
consensus_8226#4 GAGGCGGACGGCGCGCGCGGCGAAGGGGTTGGACTCGGGCGGGCGCCGTACTCCTCGAA- 467
* * ** * *
consensus_8226#2 AGAAGCGC---AAGCGTGGCGCCGCCGC--CGCCGCCGCC----GCCCCTCCCGTCGTCG 730
consensus_8226#3 AGAAGCGCCGCAAGCGCCCGCCCACCTCCTCGTCTTCGTCTCAGGCCGCCGCCGCCGCCG 633
consensus_8226#1 AGCATTGAGATAACTTCCAGATTAGCTGAAACCCTAGTTCTTTCTCATTCTGAATCATCC 821
consensus_8226#0 AGAAG------AAGCGCAAGA---------AGCCCTCGTC------CGCCGGCGCCGGAG 1144
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 TCGC---GCCGCC-CCCCGTCG----TCACCGC---GCCCGACGAC--GCCACCGGGAC- 776
consensus_8226#3 CCGCC--GCCACCTCCCCGGCGAGCCCAGCCGCT-AGCCCGACGCC--GCCACCGCCACC 688
consensus_8226#1 ACAGTATGTCAAATTCTCAATAGCATTAGCTGCTTGGTTTGACCATTGGTCATGGGGTTG 881
consensus_8226#0 CCGG---GCCCTCGTCCGAGGGGAGCCCGCCGCC--ACCCGGCGGCTCGGC-CAGCGGCG 1198
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 GTCG--GGAGGCGC--CGGCGAGGACGACGACGACGAC----GAG-GCCACCCACTCCGG 827
consensus_8226#3 GCCGACGGAGAGAT--CAGCCGACGTGCGGCCGATGCCACCGGAG-GGCCACTTCTTCAT 745
consensus_8226#1 ACGAACTGACACGCAGCAATTAATGGTTCATGTTTGGCAGGTGAGAGATTGAGGAGATGG 941
consensus_8226#0 GCGG--CGACACGT--CGGCGTCGCCGCAGTTCATCAT-CCCGTGAGTTCTTCTCGATCC 1253
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 CGAGCAGCAGGACACCA-CGCCGGCGGCCTCTCCTACTACTCCTCCGGCAACAAGTGTCG 886
consensus_8226#3 CCCGCACCCACACTTCA-TGC--ACGGACACTTCCTCGTACCGGGCGGCGACGCCGACCA 802
consensus_8226#1 ACATGATCGGCATGGCGTCGCCGGCGGAAAGCCCCGGCGGCGGCGGCACGGCCAGGCCGA 1001
consensus_8226#0 CCATCGCCATCTCCGCATCTCCATTGATCGATCGAGCCTCGCAGCAAGAAATTCCAATCT 1313
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 GTACTACCA------CCGCG-GCGGCGACTGCGGCGGCGGCGAAGGGAAGT-GCGGCGAA 938
consensus_8226#3 CCACCACCAGGTCTCCAACG-CCGGCAATGGCGGCAACACCAACACCAACA-CCAACACC 860
consensus_8226#1 GCAGGTACGAGTCG-CAGAA-GCGGCGGGACTGGCAGACGTTCGGGCAGTA-TCTGCGCA 1058
consensus_8226#0 CCTTGGCAGAAATGCCATCTTGCTTTGCCAGTACAAGGCATCATATCTCTTCTTTCCTCC 1373
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 AGGATCGGCGACGAGTT---CGTGATAAGTGTAGAGAAA-TCATTTGCCT---CCCTTTC 991
consensus_8226#3 AACACCGGCGGCGGCGG---CGGCAACGGCGACGAGATG-GCGGTGGCGA---TGGCGGC 913
consensus_8226#1 ACCACCGGCCGCCGCTGGAGCTCTCCCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTCC 1118
consensus_8226#0 TGAATTGGTTTCGATCTCT-CCCATTTTGCAAAAAAAAG-ATTTCTCCTCTTTTTAATTT 1431
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 AATCCCCTCATCACCCTC-----CAAATTCTAATCCCCTGCAGCATCATCATCATCATCT 1046
consensus_8226#3 GGTGGCGGAGGCGCACGCGG---CGGGGTGCATGCTGCCGCTGTCCGTGTTTAACTAGCA 970
consensus_8226#1 GGTACCTGGACCAGTTCGGG---AAGACGAAGGTGCACGCCCATGGCTGCCCCTTCTTCG 1175
consensus_8226#0 CATCTCTGTCTCGCTTTCTAAGCTAGGACGAAGGTCATGCATGAGTGATTTCAATTGGTA 1491
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 -TAATTTTTAGTGGTTGATTAATTATTATGATTATTACTGTTATTATTTGTTGGTATGAG 1105
consensus_8226#3 GTAATATTCAGAGATCAGCAGCATATAGCAAAAATCAAGGT-AGGGCTTAATCAAATCCG 1029
consensus_8226#1 GCCACCCCTCGCCGCCGGCGCCGTGCCCCTGCCCGCTCCGCCAGGCGTGGGGCAGCCTCG 1235
consensus_8226#0 GCTTAATTAAGACAGAAACAACATGTGTTATGTGTACTTGT---CCTGGGAACAGATTCC 1548
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 AGT---GGAGAGGCCTAATTAAGGGGGT--TTGTAGGATAAT--G------TTAGGATCG 1152
consensus_8226#3 GG----GGAGGGTTTTAATTAATGGATTACTCCAACCTTAGTTCG------TTAAAACCG 1079
consensus_8226#1 ACGCCCTCGTCGGCCGCCTCCGCGCCGCCTTCGAGGAGCACGGCGGCCGCCCTGAGTCCA 1295
consensus_8226#0 ATATATATGCCAAATGCTTT---------------------------------------- 1568
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 AGTACATAAAAGGCTGCTAAAT-------TAACATGCAGAAAATTTCAATTTGAAGAAAT 1205
consensus_8226#3 ATCGATCGATCGATGGATCGATGCGTCT-CATCATGATGGAATGATGGATTCGATTGGAT 1138
consensus_8226#1 ACCCCTTCGGCGCCCGCGCCGTCCGCCTCTACCTCCGCGACATCCGCGACACGCAGTCCA 1355
consensus_8226#0 ------------------------------------------------------------
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 AAGAGGAAGACA------------------------------------------------ 1217
consensus_8226#3 TCGATTCGATCGAGCTATCAACGTAGCGCTACTGTGTATGTACTGTTTGTGTTCTTATCA 1198
consensus_8226#1 AGGCCCGCGGCATCGCCTACGAGAAGAAGCGCCGCAAGCGCGCCGCCGCCTCCCACACCA 1415
consensus_8226#0 ------------------------------------------------------------
consensus_8226#4 ------------------------------------------------------------
consensus_8226#2 -------------------
consensus_8226#3 AACTCTAC----------- 1206
consensus_8226#1 AGCAGAAGCAGCAGCAGCA 1434
consensus_8226#0 -------------------
consensus_8226#4 -------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||