These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8229#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1091 fasta sequence [ACATAGATTCCTCATGCTCTTCTCACTCCCATCCATGTAGGCTTAGCTCCGCTAAAACCCTAGCAGGTTACATTCCCAGCCAGCGGCAGCACGCACGCGCCATGGAGGCTAGGCGTTGCCGGCGCCGCACCGCCAGCGCAGCAGCGGCGGCGGCGAGGAGGCGGCTGTGCAGCCTCCTCGCCCTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGCCGGTTCCTCGGCAGGGTGGCCAGGAGGTCCCTCGCCGCCCTGCTCCTGTCATCCGGCGGCGGCGGCAAGCCATGCCTCGCCACGGCGCCGTGGCCGCCGTGCGCGCTGGCGGAGCGCGAGTTCTCGTGCAGCAACAGCCCCAGCCCGGCGTTCCTCGCGGCGAGGAGGCTGCGGTCACGGCTG-AAGCGCCGCGCGGGCGCCGCCTCCTGCTTCGGCGCGCTCCGGTCCCCCTGCGGCTGCGGGCCGTCGGCGACAGAGGCGGCGGACCAGGAGGAGGAGGAAGAAGACGAGGAGGTTGATCAGTACGGCGCGTGGGAGTGCGGCGGCGGGGAGCTGATCGACGTGGACTACAGGGCGGAGGAGTTCATCAACATGTTCTACGAGCAACTCAGGGCGCAGAGCTTCCACCCGCCCACTGTTCTCCAGTGCCGCTCGCCATGACCGGCCGGTGCCATGGACGTGCACGTGTTGACCAGAGCGAGCTAGCTCTATCCTCCTCTCTACTGCGTACGCGTGGGCGTCGTGTATTGTGTGGTTCCAACCTTCGAGGAGTCTTCACTTTTGAGCGTTGCGCTGTACCGGTGGTATCTAAGGTTAAGGTAAAGGTGTAGGTGGCTAACCCGCGAATCCATTTATAAATTAAATGTTTATTTATTTAATTTATAAGTAGGTTCCTGGATTAGCCACTTACACCCTCATTAATCTACGGTACTTACTTTCGTCTTCTTCTCATTCCTCTATGGCTCTCAGTAATATCCCTCCTCCTCGGTGTTGTAATTTGTAAGCTATTATTTACATGTGTAGAGTGTACGTCACCTGCGTCAGTATATATGAATAAAAGAGTAGCAATGGAGTTTGGGACAAAAA] [+] EMBL AK102148 [ACATAGATTCCTCATGCTCTTCTCACTCCCATCCATGTAGGCTTAGCTCCGCTAAAACCCTAGCAGGTTACATTCCCAGCCAGCGGCAGCACGCACGCGCCATGGAGGCTAGGCGTTGCCGGCGCCGCACCGCCAGCGCAGCAGCGGCGGCGGCGAGGAGGCGGCTGTGCAGCCTCCTCGCCCTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGCCGGTTCCTCGGCAGGGTGGCCAGGAGGTCCCTCGCCGCCCTGCTCCTGTCATCCGGCGGCGGCGGCAAGCCATGCCTCGCCACGGCGCCGTGGCCGCCGTGCGCGCTGGCGGAGCGCGAGTTCTCGTGCAGCAACAGCCCCAGCCCGGCGTTCCTCGCGGCGAGGAGGCTGCGGTCACGGCTG AAGCGCCGCGCGGGCGCCGCCTCCTGCTTCGGCGCGCTCCGGTCCCCCTGCGGCTGCGGGCCGTCGGCGACAGAGGCGGCGGACCAGGAGGAGGAGGAAGAAGACGAGGAGGTTGATCAGTACGGCGCGTGGGAGTGCGGCGGCGGGGAGCTGATCGACGTGGACTACAGGGCGGAGGAGTTCATCAACATGTTCTACGAGCAACTCAGGGCGCAGAGCTTCCACCCGCCCACTGTTCTCCAGTGCCGCTCGCCATGACCGGCCGGTGCCATGGACGTGCACGTGTTGACCAGAGCGAGCTAGCTCTATCCTCCTCTCTACTGCGTACGCGTGGGCGTCGTGTATTGTGTGGTTCCAACCTTCGAGGAGTCTTCACTTTTGAGCGTTGCGCTGTACCGGTGGTATCTAAGGTTAAGGTAAAGGTGTAGGTGGCTAACCCGCGAATCCATTTATAAATTAAATGTTTATTTATTTAATTTATAAGTAGGTTCCTGGATTAGCCACTTACACCCTCATTAATCTACGGTACTTACTTTCGTCTTCTTCTCATTCCTCTATGGCTCTCAGTAATATCCCTCCTCCTCGGTGTTGTAATTTGTAAGCTATTATTTACATGTGTAGAGTGTACGTCACCTGCGTCAGTATATATGAATAAAAGAGTAGCAAT ] [+] EMBL AK107859 [ ATGCTCTTCTCACTCCCATCCATGTAGGCTTAGCTCCGCTAAAACCCTAGCAGGTTACATTCCCAGCCAGCGGCAGCACGCACGCGCCATGGAGGCTAGGCGTTGCCGGCGCCGCACCGCCAGCGCAGCAGCGGCGGCGGCGAGGAGGCGGCTGTGCAGCCTCCTCGCCCTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGCCGGTTCCTCGGCAGGGTGGCCAGGAGGTCCCTCGCCGCCCTGCTCCTGTCATCCGGCGGCGGCGGCAAGCCATGCCTCGCCACGGCGCCGTGGCCGCCGTGCGCGCTGGCGGAGCGCGAGTTCTCGTGCAGCAACAGCCCCAGCCCGGCGTTCCTCGCGGCGAGGAGGCTGCGGTCACGGCTG AAGCGCCGCGCGGGCGCCGCCTCCTGCTTCGGCGCGCTCCGGTCCCCCTGCGGCTGCGGGCCGTCGGCGACAGAGGCGGCGGACCAGGAGGAGGAGGAAGAAGACGAGGAGGTTGATCAGTACGGCGCGTGGGAGTGCGGCGGCGGGGAGCTGATCGACGTGGACTACAGGGCGGAGGAGTTCATCAACATGTTCTACGAGCAACTCAGGGCGCAGAGCTTCCACCCGCCCACTGTTCTCCAGTGCCGCTCGCCATGACCGGCCGGTGCCATGGACGTGCACGTGTTGACCAGAGCGAGCTAGCTCTATCCTCCTCTCTACTGCGTACGCGTGGGCGTCGTGTATTGTGTGGTTCCAACCTTCGAGGAGTCTTCACTTTTGAGCGTTGCGCTGTACCGGTGGTATCTAAGGTTAAGGTAAAGGTGTAGGTGGCTAACCCGCGAATCCATTTATAGATTAAATGTTTATTTATTTAATTTATAAGTAGGTTCCTGGATTAGCCACTTACACCCTCATTAATCTACGGTACTTACTTTCGTCTTCTTCTCATTCCTCTATGGCTCTCAGTAATATCCCTCCTCCTCGGTGTTGTAATTTGTAAGCTATTATTTACATGTGTAGAGTGTACGTCACCTGCGTCAGTATATATGAATAAAAGAGTAGCAATGG ] [+] EMBL C27720 [ CCCATCCATGTAGGCTTAGCTCCGCTAAAACCCTAGCAGGTTACATTCCCAGCCAGCGGCAGCACGCACGCGCCATGGAGGCTAGGCGTTGCCGGCGCCGCACCGCCAGCGCA NAGCGGCGGCGGCGAGGAGGCGGCTGTGCAGCCTCCTCG CCTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGCCGGTTCCTCGGCAGGGTGGCCAGGAGGTCCCTCGCCGCCCTGCTCCTGTNATCCGGCGGCGGCGGCAAG CATGCCTNGCCACGGCGCCGTGGCCGACGTTCGCGCTG ] [+] EMBL AU092638 [ TCACGGCTGAAAGCGCCGCGCGGGCGCCG CTCCTGCTTCGGCGCGCTCCGGTCCCCCTGCGGCTGCGGGCCGTCGGCGACAGAGGCGGCGGACCAGGAGGAGGAGGAAGAAGACGAGGAGGTTGATCAGTACGGCGCGTGGGAGTGCGGCGGCGGGGAGCTGATCGACGTGGACTACAGGGCGGAGGAGTTCATCAACATGTTCTACGAGCAACTCAGGGCGCAGAGCTTCCACCCGCCCACTGTTCTCCAGTGCCGCTCGCCATGACCGGCCGGTGCCATGGACGTGCACGTGTTGACCAGAGCGAGCTAGCTCTATCCTCCTCTCTA TGCGTACGCGTGGGCGTCGTGTATTGTGTGGTTCCAACCTTCGAGGAGTCTTCACTTTTGAGCGTTGCGCTGTACCGGTGGTATCTAAGGTTAAGGTAAAGGTGTAGGTGGCTAACCCGCGAATCCATTTATAAATTAAATGTTTATTTATTTAATTTATAAGTAGGTTCCTGGATTAGCCACTTACACCCTCATTAATCTACGGTACTTACTTTCGTCTTCTTCTCATTCCTCTATGGCTCTCAGTAATATCCCTCCTCCTCGGTGTTGTAATTTGTAAGCTATTATTTACATGTGTAGAGTGTACGTCACCTGCGTCAGTATATATGAATAAAAGAGTAGCAATGGAGTTTGGGACAAAAA] consensusID : consensus_8229#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [CCGCTAAAACCCTAGCAGGTTACATTCCCAGCCAGCGGCAGCACGNACGCGCCATGGAGGCTAGGCGTTGNCGNCGNCGNACCGNCAGCGNAGAGCGGCGGCGNCGAGGAGGCGGCTGTGCAGNCTCCTCGCCTTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGNCGNTTCCTCGGCAGTGTGGCCAGGAGGTCCCTCGTCGNCCTGTTC] [+] EMBL OS11322A [CCGCTAAAACCCTAGCAGGTTACATTCCCAGCCAGCGGCAGCACGNACGCGCCATGGAGGCTAGGCGTTGNCGNCGNCGNACCGNCAGCGNAGAGCGGCGGCGNCGAGGAGGCGGCTGTGCAGNCTCCTCGCCTTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGNCGNTTCCTCGGCAGTGTGGCCAGGAGGTCCCTCGTCGNCCTGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8229#0 ACATAGATTCCTCATGCTCTTCTCACTCCCATCCATGTAGGCTTAGCTCCGCTAAAACCC 60 consensus_8229#1 ------------------------------------------------CCGCTAAAACCC 12 ************ consensus_8229#0 TAGCAGGTTACATTCCCAGCCAGCGGCAGCACGCACGCGCCATGGAGGCTAGGCGTTGCC 120 consensus_8229#1 TAGCAGGTTACATTCCCAGCCAGCGGCAGCACGNACGCGCCATGGAGGCTAGGCGTTGNC 72 ********************************* ************************ * consensus_8229#0 GGCGCCGCACCGCCAGCGCAGCAGCGGCGGCGGCGAGGAGGCGGCTGTGCAGCCTCCTCG 180 consensus_8229#1 GNCGNCGNACCGNCAGCGNAG-AGCGGCGGCGNCGAGGAGGCGGCTGTGCAGNCTCCTCG 131 * ** ** **** ***** ** ********** ******************* ******* consensus_8229#0 CCCTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGCCGGTTCCTCGGCAGGG 240 consensus_8229#1 CCTTCGCCGGCGACTACCTCAAGTACCTCCTCACGAAGCGGGGNCGNTTCCTCGGCAGTG 191 ** **************************************** ** *********** * consensus_8229#0 TGGCCAGGAGGTCCCTCGCCGCCCTGCTCCTGTCATCCGGCGGCGGCGGCAAGCCATGCC 300 consensus_8229#1 TGGCCAGGAGGTCCCTCGTCGNCCTGTTC------------------------------- 220 ****************** ** **** ** consensus_8229#0 TCGCCACGGCGCCGTGGCCGCCGTGCGCGCTGGCGGAGCGCGAGTTCTCGTGCAGCAACA 360 consensus_8229#1 ------------------------------------------------------------ consensus_8229#0 GCCCCAGCCCGGCGTTCCTCGCGGCGAGGAGGCTGCGGTCACGGCTGAAGCGCCGCGCGG 420 consensus_8229#1 ------------------------------------------------------------ consensus_8229#0 GCGCCGCCTCCTGCTTCGGCGCGCTCCGGTCCCCCTGCGGCTGCGGGCCGTCGGCGACAG 480 consensus_8229#1 ------------------------------------------------------------ consensus_8229#0 AGGCGGCGGACCAGGAGGAGGAGGAAGAAGACGAGGAGGTTGATCAGTACGGCGCGTGGG 540 consensus_8229#1 ------------------------------------------------------------ consensus_8229#0 AGTGCGGCGGCGGGGAGCTGATCGACGTGGACTACAGGGCGGAGGAGTTCATCAACATGT 600 consensus_8229#1 ------------------------------------------------------------ consensus_8229#0 TCTACGAGCAACTCAGGGCGCAGAGCTTCCACCCGCCCACTGTTCTCCAGTGCCGCTCGC 660 consensus_8229#1 ------------------------------------------------------------ consensus_8229#0 CATGACCGGCCGGTGCCATGGACGTGCACGTGTTGACCAGAGCGAGCTAGCTCTATCCTC 720 consensus_8229#1 ------------------------------------------------------------ consensus_8229#0 CTCTCTACTGCGTACGCGTGGGCGTCGTGTATTGTGTGGTTCCAACCTTCGAGGAGTCTT 780 consensus_8229#1 ------------------------------------------------------------ consensus_8229#0 CACTTTTGAGCGTTGCGCTGTACCGGTGGTATCTAAGGTTAAGGTAAAGGTGTAGGTGGC 840 consensus_8229#1 ------------------------------------------------------------ consensus_8229#0 TAACCCGCGAATCCATTTATAAATTAAATGTTTATTTATTTAATTTATAAGTAGGTTCCT 900 consensus_8229#1 ------------------------------------------------------------ consensus_8229#0 GGATTAGCCACTTACACCCTCATTAATCTACGGTACTTACTTTCGTCTTCTTCTCATTCC 960 consensus_8229#1 ------------------------------------------------------------ consensus_8229#0 TCTATGGCTCTCAGTAATATCCCTCCTCCTCGGTGTTGTAATTTGTAAGCTATTATTTAC 1020 consensus_8229#1 ------------------------------------------------------------ consensus_8229#0 ATGTGTAGAGTGTACGTCACCTGCGTCAGTATATATGAATAAAAGAGTAGCAATGGAGTT 1080 consensus_8229#1 ------------------------------------------------------------ consensus_8229#0 TGGGACAAAAA 1091 consensus_8229#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||