These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1529 fasta sequence [CTGTTAAGCCAATATAAGACCTTAGAATATCCGGAATATGGTGAACTCCGTATGAAGGATAAAGGCCTTTTCTCTAGAACTCTGTATGAAAGACGCAAGATGTCATGCCACCCTCTATCAAGGAAAAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAGGAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACTTAAACAGATGATGCACACGATGCTACGAGAGATCCCTAGTATTCCCTGAGATATGCATCTTTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTCTCCCGGTGTTGGCTTGGTGCAGCAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCAACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATCAATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCTGTATACTTTGCAATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATAAATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCACCATCCGAGCATTCTGGAGCAATATAACCAATGGTTCCCTTTATTACAAGGGAGGAGGTTGAGTTCAAATAACTTAGAGATGATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAAGTCTCCAACATGAGCAACCATGTTATCATCTAGAAGGATGTTGCTAGGCTTCAGGTCACAGTGAACAATTGTTCCTTGGTTGCTATGGTGCAGGTACTCCAGTGCATCTGATACATCCACCATAATGTTTATTCTCTGAGCCAATGTAATGTGGTTTTGATGTGGAGCATCTCCATCACCTCCGTTTGAGTATAGTAATTTATGTAAATCCCCACCTGGCATAAACTTATACACTAAAGCTTTGAAGTCATTGCCTTTAGAATCAATACTGGAGCATGCAGTTAGGATAGGAACTAGATTACGGTGTCTCACATTTCTTAAAGCATTACATTCTGCAATAAAGCTTTTTTGTGCGCCCCTTGTCTCTAGGCTGAATACCTTCACAGCAACCACATCATTGCATTGAAATAGTTTTCCTTGATATACACAACTGAACCTCCCCTAGCCAATCTGGAAGAACACCTGAAAAACGATTTCCAGACAATTCTATCACAACCAGATTGTGAAGGTTTGTTAGGCCAGAAGGAAATTGCCCTGATAGCTGATTTTGTCCCATGTGCACATATTGCAACTGAAAAGAATGGTTTCCAAATGAATTTGGCAGACGGCCTTCTAGACGATTCCAAGATATCGAGAACATTTGCAGCTCAGTGCAATTGGCAATGCTGTTCAGAAACTCCTGGTCTTCATTGTTACGTCCATGGAGTTTATTTTCCTCAAGATTTAACCAAGACAGTTTAGTAAGTTTGC] [+] EMBL CB668374 [CTGTTAAGCCAATATAAGACCTTAGAATATCCGGAATATGGTGAACTCCGTATGAAGGATAAAGGCCTTTTCTCTAGAACTCTGTATGAAAGACGCAAGATGTCATGCCACCCTCTATCAAGGAAAAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAGGAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACTTAAACAGATGATGCACACGATGCTACGAGAGATCCCTAGTATTCCCTGAGATATGCATCTTTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTCTCCCGGTGTTGGCTTGGTGCAGCAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCAACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATCAATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCTGTATACTTTGCAATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATAAATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCACCATCCGAGCATTCTGGAGCAATATAACCAATGGTTCCCTTTATTACAAGGGAGGAGGTTGAGTTCAAATAACTTAGAGATGATGTTGTCGAATCA ] [+] EMBL CB670300 [ TATGAAAGATGCAAGATGTCATGCCACCCTCTATCAAGGAAAAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAGGAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACTTAAACAGATGATGCACACGATGCTACGAGAGATTCCTAGTATTCCCTGAGATATGCATCTTTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTCTCCCGGTGTTGGCTTGGTGCAGCAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCAACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATCAATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCTGTATACTTTGCAATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATAAATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCACCATCCGAGCATTCTGGAGCAATATAACCAATGGTTCCCTTTATTACAAGGGAGGAGGTTGAGTTCAAATAACTTAGAGATGATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAAGTCTCCAACATGAGCAACCATGTTATCATCTAGAAGGATGTTGCTAGGCTTCAGGTCACAGTGAACAATTGTTCCTTGGTTGCTATGGTGCAGGTACTCCAGTGCAT ] [+] EMBL CB626858 [ tAAAAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAGGAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACTTAAACAGATGATGCACACGATGCTACGAGAGATCCCTAGTATTCCCTGAGATATGCATCTTTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTTTCCTGGTGTTGGCTTGGTGCAACAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCAACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATCAATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCTGTATACTTTGCTATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATAAATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCACCATCCGAGCATTCTGGAGCAATATAACCAATGGTTCCCTTTATTACAAGGGAGGAGGTTGAGTTCGAATAACTTAGAGATGATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAAGTCTCCAACATGAGCAACCATGTTATCATCTAGAAGGATGTTGCTAGGCTTCAGGTCACAGTGAACAATTGTTCCTTGGTTGCTATGGTGCAGGTACTCCAGTGCATCTGATACATCCACCATAATGTTTATTCTCTGAGCCAATGTAATGTGGTTTTGATGTGGAGCATCTCCATCACCTCCGTTTGAGTATAGTAATTTA ] [-] EMBL CB668373 [ ATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAAGTCTCCAACATGAGCAACCATGTTATCATCTAGAAGGATGTTGCTAGGCTTCAGGTCACAGTGAACAATTGTTCCTTGGTTGCTATGGTGCAGGTACTCCAGTGCATCTGATACATCCACCATAATGTTTATTCTCTGAGCCAATGTAATGTGGTTTTGATGTGGAGCATCTCCATCACCTCCGTTTGAGTATAGTAATTTATGTAAATCCCCACCTGGCATAAACTTATACACTAAAGCTTTGAAGTCATTGCCTTTAGAATCAATACTGGAGCATGCAGTTAGGATAGGAACTAGATTACGGTGTCTCACATTTCTTAAAGCATTACATTCTGCAATAAAGCTTTTTTGTGCGCCCCTTGTCTCTAGGCTGAATACCTTCACAGCAACCACATCATTGCATTGAAATAGTTTTCCTTGATATACACAACTGAACCTCCCCTAGCCAATCTGGAAGAACACCTGAAAAACGATTTCCAGACAATTCTATCACAACCAGATTGTGAAGGTTTGTTAGGCCAGAAGGAAATTGCCCTGATAGCTGATTTTGTCCCATGTGCACATATTGCAACTGAAAAGAATGGTTTCCAAATGAATTTGGCAGACGGCCTTCTAGACGATTCCAAGATATCGAGAACATTTGCAGCTCAGTGCAATTGGCAATGCTGTTCAGAAACTCCTGGTCTTCATTGTTACGTCCATGGAGTTTATTTTCCTCAAGATTTAACCAAGACAGTTTAGTAAGTTTGC] consensusID : consensus_8230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence [AAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAGGAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACTTAAACAGATGATGCACACGATGCTACGAGAGATCCCTAGTATTCCCTGAGATATGCATCTTTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTTTCCTGGTGTTGGCTTGGTGCAACAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCAACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATCAATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCTGTATACTTTGCTATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATAAATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCACCATCCGAGCATTCTAAAATTACATATGACAAGAGTTGAGTTCACAAGTTGGCATATATCAGACAATAAATTAAATATGTAGCAATGCAAAACAAGGTAAAGTTAACAGTTACCTGGAGCAATATAACCAATGGTTCCCTTTATTACAAGGGAGGAGGTTGAGTTCGAATAACTTAGAGATGATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAAGTCTCCAACATGAGCAACCATGTTATCATCTAGAAGGATG] [+] EMBL CB635599 [AAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAGGAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACTTAAACAGATGATGCACACGATGCTACGAGAGATCCCTAGTATTCCCTGAGATATGCATCTTTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTTTCCTGGTGTTGGCTTGGTGCAACAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCAACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATCAATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCTGTATACTTTGCTATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATAAATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCACCATCCGAGCATTCTAAAATTACATATGACAAGAGTTGAGTTCACAAGTTGGCATATATCAGACAATAAATTAAATATGTAGCAATGCAAAACAAGGTAAAGTTAACAGTTACCTGGAGCAATATAACCAATGGTTCCCTTTATTACAAGGGAGGAGGTTGAGTTCGAATAACTTAGAGATGATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAAGTCTCCAACATGAGCAACCATGTTATCATCTAGAAGGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8230#0 CTGTTAAGCCAATATAAGACCTTAGAATATCCGGAATATGGTGAACTCCGTATGAAGGAT 60 consensus_8230#1 ------------------------------------------------------------ consensus_8230#0 AAAGGCCTTTTCTCTAGAACTCTGTATGAAAGACGCAAGATGTCATGCCACCCTCTATCA 120 consensus_8230#1 ------------------------------------------------------------ consensus_8230#0 AGGAAAAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAG 180 consensus_8230#1 -----AAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAG 55 ******************************************************* consensus_8230#0 GAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACT 240 consensus_8230#1 GAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACT 115 ************************************************************ consensus_8230#0 TAAACAGATGATGCACACGATGCTACGAGAGATCCCTAGTATTCCCTGAGATATGCATCT 300 consensus_8230#1 TAAACAGATGATGCACACGATGCTACGAGAGATCCCTAGTATTCCCTGAGATATGCATCT 175 ************************************************************ consensus_8230#0 TTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTCTCCCGGTGTTGGC 360 consensus_8230#1 TTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTTTCCTGGTGTTGGC 235 ********************************************** *** ********* consensus_8230#0 TTGGTGCAGCAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCA 420 consensus_8230#1 TTGGTGCAACAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCA 295 ******** *************************************************** consensus_8230#0 ACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATC 480 consensus_8230#1 ACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATC 355 ************************************************************ consensus_8230#0 AATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCT 540 consensus_8230#1 AATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCT 415 ************************************************************ consensus_8230#0 GTATACTTTGCAATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATA 600 consensus_8230#1 GTATACTTTGCTATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATA 475 *********** ************************************************ consensus_8230#0 AATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCA 660 consensus_8230#1 AATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCA 535 ************************************************************ consensus_8230#0 CCATCCGAGCATTCTGGAGCAATATA-ACCAATGGTTCCCTTTATTACAAGGGAGGAGGT 719 consensus_8230#1 CCATCCGAGCATTCTAAAATTACATATGACAAGAGTTGAGTTCACAAGTTGGCATATATC 595 *************** * * *** *** *** ** * * ** * consensus_8230#0 TGAGTTCAAATAACTTAGAGATGATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAA 779 consensus_8230#1 AGAC----AATAAATTAAATATGTAGCAATGCAAAACAAGGTAAAGTTAACA--GTTACC 649 ** ***** *** * *** * * ** ** * ** * ** * * consensus_8230#0 GTCTCCAACATGAGCAACCATGTTATCATCTAGAAGGATGTTGCTAGGCTTCAGGTCACA 839 consensus_8230#1 TGGAGCAATATAACCAATGGTTCCCTTTATTACAAGGGAGGAGGTTGAGTTCGAATAACT 709 *** ** * *** * * ** **** * * * * *** * ** consensus_8230#0 GTGAACAATTGTTCCTTGGTTG--CTATGGTGCAGGTACTCCAGTGCATCTGATACATCC 897 consensus_8230#1 TAGAGATGATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAAGTCTCCAA--CATGA 767 ** **** * * * * * *** * ** * *** consensus_8230#0 ACCATAATGTTTATTCTCTGAGCCAATGTAATGTGGTTTTGATGTGGAGCATCTCCATCA 957 consensus_8230#1 GCAACCATGTT-ATCATCTAGAAGGATG-------------------------------- 794 * * ***** ** *** *** consensus_8230#0 CCTCCGTTTGAGTATAGTAATTTATGTAAATCCCCACCTGGCATAAACTTATACACTAAA 1017 consensus_8230#1 ------------------------------------------------------------ consensus_8230#0 GCTTTGAAGTCATTGCCTTTAGAATCAATACTGGAGCATGCAGTTAGGATAGGAACTAGA 1077 consensus_8230#1 ------------------------------------------------------------ consensus_8230#0 TTACGGTGTCTCACATTTCTTAAAGCATTACATTCTGCAATAAAGCTTTTTTGTGCGCCC 1137 consensus_8230#1 ------------------------------------------------------------ consensus_8230#0 CTTGTCTCTAGGCTGAATACCTTCACAGCAACCACATCATTGCATTGAAATAGTTTTCCT 1197 consensus_8230#1 ------------------------------------------------------------ consensus_8230#0 TGATATACACAACTGAACCTCCCCTAGCCAATCTGGAAGAACACCTGAAAAACGATTTCC 1257 consensus_8230#1 ------------------------------------------------------------ consensus_8230#0 AGACAATTCTATCACAACCAGATTGTGAAGGTTTGTTAGGCCAGAAGGAAATTGCCCTGA 1317 consensus_8230#1 ------------------------------------------------------------ consensus_8230#0 TAGCTGATTTTGTCCCATGTGCACATATTGCAACTGAAAAGAATGGTTTCCAAATGAATT 1377 consensus_8230#1 ------------------------------------------------------------ consensus_8230#0 TGGCAGACGGCCTTCTAGACGATTCCAAGATATCGAGAACATTTGCAGCTCAGTGCAATT 1437 consensus_8230#1 ------------------------------------------------------------ consensus_8230#0 GGCAATGCTGTTCAGAAACTCCTGGTCTTCATTGTTACGTCCATGGAGTTTATTTTCCTC 1497 consensus_8230#1 ------------------------------------------------------------ consensus_8230#0 AAGATTTAACCAAGACAGTTTAGTAAGTTTGC 1529 consensus_8230#1 -------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||