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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1529 fasta sequence
[CTGTTAAGCCAATATAAGACCTTAGAATATCCGGAATATGGTGAACTCCGTATGAAGGATAAAGGCCTTTTCTCTAGAACTCTGTATGAAAGACGCAAGATGTCATGCCACCCTCTATCAAGGAAAAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAGGAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACTTAAACAGATGATGCACACGATGCTACGAGAGATCCCTAGTATTCCCTGAGATATGCATCTTTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTCTCCCGGTGTTGGCTTGGTGCAGCAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCAACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATCAATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCTGTATACTTTGCAATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATAAATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCACCATCCGAGCATTCTGGAGCAATATAACCAATGGTTCCCTTTATTACAAGGGAGGAGGTTGAGTTCAAATAACTTAGAGATGATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAAGTCTCCAACATGAGCAACCATGTTATCATCTAGAAGGATGTTGCTAGGCTTCAGGTCACAGTGAACAATTGTTCCTTGGTTGCTATGGTGCAGGTACTCCAGTGCATCTGATACATCCACCATAATGTTTATTCTCTGAGCCAATGTAATGTGGTTTTGATGTGGAGCATCTCCATCACCTCCGTTTGAGTATAGTAATTTATGTAAATCCCCACCTGGCATAAACTTATACACTAAAGCTTTGAAGTCATTGCCTTTAGAATCAATACTGGAGCATGCAGTTAGGATAGGAACTAGATTACGGTGTCTCACATTTCTTAAAGCATTACATTCTGCAATAAAGCTTTTTTGTGCGCCCCTTGTCTCTAGGCTGAATACCTTCACAGCAACCACATCATTGCATTGAAATAGTTTTCCTTGATATACACAACTGAACCTCCCCTAGCCAATCTGGAAGAACACCTGAAAAACGATTTCCAGACAATTCTATCACAACCAGATTGTGAAGGTTTGTTAGGCCAGAAGGAAATTGCCCTGATAGCTGATTTTGTCCCATGTGCACATATTGCAACTGAAAAGAATGGTTTCCAAATGAATTTGGCAGACGGCCTTCTAGACGATTCCAAGATATCGAGAACATTTGCAGCTCAGTGCAATTGGCAATGCTGTTCAGAAACTCCTGGTCTTCATTGTTACGTCCATGGAGTTTATTTTCCTCAAGATTTAACCAAGACAGTTTAGTAAGTTTGC]
[+] EMBL CB668374 [CTGTTAAGCCAATATAAGACCTTAGAATATCCGGAATATGGTGAACTCCGTATGAAGGATAAAGGCCTTTTCTCTAGAACTCTGTATGAAAGACGCAAGATGTCATGCCACCCTCTATCAAGGAAAAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAGGAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACTTAAACAGATGATGCACACGATGCTACGAGAGATCCCTAGTATTCCCTGAGATATGCATCTTTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTCTCCCGGTGTTGGCTTGGTGCAGCAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCAACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATCAATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCTGTATACTTTGCAATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATAAATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCACCATCCGAGCATTCTGGAGCAATATAACCAATGGTTCCCTTTATTACAAGGGAGGAGGTTGAGTTCAAATAACTTAGAGATGATGTTGTCGAATCA ]
[+] EMBL CB670300 [ TATGAAAGATGCAAGATGTCATGCCACCCTCTATCAAGGAAAAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAGGAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACTTAAACAGATGATGCACACGATGCTACGAGAGATTCCTAGTATTCCCTGAGATATGCATCTTTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTCTCCCGGTGTTGGCTTGGTGCAGCAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCAACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATCAATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCTGTATACTTTGCAATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATAAATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCACCATCCGAGCATTCTGGAGCAATATAACCAATGGTTCCCTTTATTACAAGGGAGGAGGTTGAGTTCAAATAACTTAGAGATGATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAAGTCTCCAACATGAGCAACCATGTTATCATCTAGAAGGATGTTGCTAGGCTTCAGGTCACAGTGAACAATTGTTCCTTGGTTGCTATGGTGCAGGTACTCCAGTGCAT ]
[+] EMBL CB626858 [ tAAAAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAGGAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACTTAAACAGATGATGCACACGATGCTACGAGAGATCCCTAGTATTCCCTGAGATATGCATCTTTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTTTCCTGGTGTTGGCTTGGTGCAACAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCAACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATCAATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCTGTATACTTTGCTATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATAAATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCACCATCCGAGCATTCTGGAGCAATATAACCAATGGTTCCCTTTATTACAAGGGAGGAGGTTGAGTTCGAATAACTTAGAGATGATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAAGTCTCCAACATGAGCAACCATGTTATCATCTAGAAGGATGTTGCTAGGCTTCAGGTCACAGTGAACAATTGTTCCTTGGTTGCTATGGTGCAGGTACTCCAGTGCATCTGATACATCCACCATAATGTTTATTCTCTGAGCCAATGTAATGTGGTTTTGATGTGGAGCATCTCCATCACCTCCGTTTGAGTATAGTAATTTA ]
[-] EMBL CB668373 [ ATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAAGTCTCCAACATGAGCAACCATGTTATCATCTAGAAGGATGTTGCTAGGCTTCAGGTCACAGTGAACAATTGTTCCTTGGTTGCTATGGTGCAGGTACTCCAGTGCATCTGATACATCCACCATAATGTTTATTCTCTGAGCCAATGTAATGTGGTTTTGATGTGGAGCATCTCCATCACCTCCGTTTGAGTATAGTAATTTATGTAAATCCCCACCTGGCATAAACTTATACACTAAAGCTTTGAAGTCATTGCCTTTAGAATCAATACTGGAGCATGCAGTTAGGATAGGAACTAGATTACGGTGTCTCACATTTCTTAAAGCATTACATTCTGCAATAAAGCTTTTTTGTGCGCCCCTTGTCTCTAGGCTGAATACCTTCACAGCAACCACATCATTGCATTGAAATAGTTTTCCTTGATATACACAACTGAACCTCCCCTAGCCAATCTGGAAGAACACCTGAAAAACGATTTCCAGACAATTCTATCACAACCAGATTGTGAAGGTTTGTTAGGCCAGAAGGAAATTGCCCTGATAGCTGATTTTGTCCCATGTGCACATATTGCAACTGAAAAGAATGGTTTCCAAATGAATTTGGCAGACGGCCTTCTAGACGATTCCAAGATATCGAGAACATTTGCAGCTCAGTGCAATTGGCAATGCTGTTCAGAAACTCCTGGTCTTCATTGTTACGTCCATGGAGTTTATTTTCCTCAAGATTTAACCAAGACAGTTTAGTAAGTTTGC]
consensusID : consensus_8230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 794 fasta sequence
[AAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAGGAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACTTAAACAGATGATGCACACGATGCTACGAGAGATCCCTAGTATTCCCTGAGATATGCATCTTTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTTTCCTGGTGTTGGCTTGGTGCAACAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCAACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATCAATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCTGTATACTTTGCTATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATAAATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCACCATCCGAGCATTCTAAAATTACATATGACAAGAGTTGAGTTCACAAGTTGGCATATATCAGACAATAAATTAAATATGTAGCAATGCAAAACAAGGTAAAGTTAACAGTTACCTGGAGCAATATAACCAATGGTTCCCTTTATTACAAGGGAGGAGGTTGAGTTCGAATAACTTAGAGATGATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAAGTCTCCAACATGAGCAACCATGTTATCATCTAGAAGGATG]
[+] EMBL CB635599 [AAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAGGAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACTTAAACAGATGATGCACACGATGCTACGAGAGATCCCTAGTATTCCCTGAGATATGCATCTTTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTTTCCTGGTGTTGGCTTGGTGCAACAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCAACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATCAATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCTGTATACTTTGCTATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATAAATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCACCATCCGAGCATTCTAAAATTACATATGACAAGAGTTGAGTTCACAAGTTGGCATATATCAGACAATAAATTAAATATGTAGCAATGCAAAACAAGGTAAAGTTAACAGTTACCTGGAGCAATATAACCAATGGTTCCCTTTATTACAAGGGAGGAGGTTGAGTTCGAATAACTTAGAGATGATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAAGTCTCCAACATGAGCAACCATGTTATCATCTAGAAGGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8230#0 CTGTTAAGCCAATATAAGACCTTAGAATATCCGGAATATGGTGAACTCCGTATGAAGGAT 60
consensus_8230#1 ------------------------------------------------------------
consensus_8230#0 AAAGGCCTTTTCTCTAGAACTCTGTATGAAAGACGCAAGATGTCATGCCACCCTCTATCA 120
consensus_8230#1 ------------------------------------------------------------
consensus_8230#0 AGGAAAAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAG 180
consensus_8230#1 -----AAACAAATCAAACAGTATATTAGAGCAGAAACATCTTGCCGCGCGTTGTAACAAG 55
*******************************************************
consensus_8230#0 GAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACT 240
consensus_8230#1 GAACAGCACATTCTAGTAGGACAATGGCCACTTCTTTACCCAATGTTGTACCGAACTACT 115
************************************************************
consensus_8230#0 TAAACAGATGATGCACACGATGCTACGAGAGATCCCTAGTATTCCCTGAGATATGCATCT 300
consensus_8230#1 TAAACAGATGATGCACACGATGCTACGAGAGATCCCTAGTATTCCCTGAGATATGCATCT 175
************************************************************
consensus_8230#0 TTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTCTCCCGGTGTTGGC 360
consensus_8230#1 TTGATTCTGTGCAACTTGGCAGCCACCTCTTGCATGCTGATGCGTTTTCCTGGTGTTGGC 235
********************************************** *** *********
consensus_8230#0 TTGGTGCAGCAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCA 420
consensus_8230#1 TTGGTGCAACAGAGTCCAATGTTTAGCATAGAGCGTAGACAATGTAGGCCTTTCTCCTCA 295
******** ***************************************************
consensus_8230#0 ACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATC 480
consensus_8230#1 ACTGCTATTGGATTTTCCTGGCAGGGGTCCAAATCTTCCTTATCTGTAGAACAGGGGATC 355
************************************************************
consensus_8230#0 AATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCT 540
consensus_8230#1 AATTCTTGTTGCAGCTTGGGATCAACAATCTCAAGTATCCTGTCAGGGAAGTTGATAGCT 415
************************************************************
consensus_8230#0 GTATACTTTGCAATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATA 600
consensus_8230#1 GTATACTTTGCTATGCTCAATCCATCCATAAACATATCGTCTGTTGGCCTTCTCCGAATA 475
*********** ************************************************
consensus_8230#0 AATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCA 660
consensus_8230#1 AATATTTCCAAGAGAACAACTCCAAAGCTGTATACATCTGAGGCAGTTGAAACTTGACCA 535
************************************************************
consensus_8230#0 CCATCCGAGCATTCTGGAGCAATATA-ACCAATGGTTCCCTTTATTACAAGGGAGGAGGT 719
consensus_8230#1 CCATCCGAGCATTCTAAAATTACATATGACAAGAGTTGAGTTCACAAGTTGGCATATATC 595
*************** * * *** *** *** ** * * ** *
consensus_8230#0 TGAGTTCAAATAACTTAGAGATGATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAA 779
consensus_8230#1 AGAC----AATAAATTAAATATGTAGCAATGCAAAACAAGGTAAAGTTAACA--GTTACC 649
** ***** *** * *** * * ** ** * ** * ** * *
consensus_8230#0 GTCTCCAACATGAGCAACCATGTTATCATCTAGAAGGATGTTGCTAGGCTTCAGGTCACA 839
consensus_8230#1 TGGAGCAATATAACCAATGGTTCCCTTTATTACAAGGGAGGAGGTTGAGTTCGAATAACT 709
*** ** * *** * * ** **** * * * * *** * **
consensus_8230#0 GTGAACAATTGTTCCTTGGTTG--CTATGGTGCAGGTACTCCAGTGCATCTGATACATCC 897
consensus_8230#1 TAGAGATGATGTTGTCGAATCAAATTTGAATCTTGCAAGGCCAAAGTCTCCAA--CATGA 767
** **** * * * * * *** * ** * ***
consensus_8230#0 ACCATAATGTTTATTCTCTGAGCCAATGTAATGTGGTTTTGATGTGGAGCATCTCCATCA 957
consensus_8230#1 GCAACCATGTT-ATCATCTAGAAGGATG-------------------------------- 794
* * ***** ** *** ***
consensus_8230#0 CCTCCGTTTGAGTATAGTAATTTATGTAAATCCCCACCTGGCATAAACTTATACACTAAA 1017
consensus_8230#1 ------------------------------------------------------------
consensus_8230#0 GCTTTGAAGTCATTGCCTTTAGAATCAATACTGGAGCATGCAGTTAGGATAGGAACTAGA 1077
consensus_8230#1 ------------------------------------------------------------
consensus_8230#0 TTACGGTGTCTCACATTTCTTAAAGCATTACATTCTGCAATAAAGCTTTTTTGTGCGCCC 1137
consensus_8230#1 ------------------------------------------------------------
consensus_8230#0 CTTGTCTCTAGGCTGAATACCTTCACAGCAACCACATCATTGCATTGAAATAGTTTTCCT 1197
consensus_8230#1 ------------------------------------------------------------
consensus_8230#0 TGATATACACAACTGAACCTCCCCTAGCCAATCTGGAAGAACACCTGAAAAACGATTTCC 1257
consensus_8230#1 ------------------------------------------------------------
consensus_8230#0 AGACAATTCTATCACAACCAGATTGTGAAGGTTTGTTAGGCCAGAAGGAAATTGCCCTGA 1317
consensus_8230#1 ------------------------------------------------------------
consensus_8230#0 TAGCTGATTTTGTCCCATGTGCACATATTGCAACTGAAAAGAATGGTTTCCAAATGAATT 1377
consensus_8230#1 ------------------------------------------------------------
consensus_8230#0 TGGCAGACGGCCTTCTAGACGATTCCAAGATATCGAGAACATTTGCAGCTCAGTGCAATT 1437
consensus_8230#1 ------------------------------------------------------------
consensus_8230#0 GGCAATGCTGTTCAGAAACTCCTGGTCTTCATTGTTACGTCCATGGAGTTTATTTTCCTC 1497
consensus_8230#1 ------------------------------------------------------------
consensus_8230#0 AAGATTTAACCAAGACAGTTTAGTAAGTTTGC 1529
consensus_8230#1 --------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||