cluster # 8234

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Oryza sativa
cluster # 8234 cluster # 8234 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8234#0 length = 346 sequences # 2
consensus_8234#1 length = 284 sequences # 1

consensus_8234#2 length = 282 sequences # 1
consensus_8234#3 length = 247 sequences # 1

consensusID : consensus_8234#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 346
fasta sequence

                              [ACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCGAAAAAAAATTCCCTACAAATTTCCCCTCAAATGATCCAAATCCCCAGGGGCCCCGACAAGCGTTCAATTTTGCATGCAGTGGGGTCATATCACAAAGGTTTTAGGGCCAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCATTTTCAAATCATCCCCTTTTCCAAAAAACGTTGGATCCCCACTTGTACTACTCCTTCAACCCCATGTCAGGGTCCAAGGGCAAATTCCGGGCCGTTAAATT]

[+] EMBL CF336104             [ACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCGAAAAAAAATTCCCTACAAATTTCCCCTCAAATGATCCAAATCCCCAGGGGCCCCGACAAGCGTTCAATTTTGCATGCAGTGGGGTCATATCACAAAGGTTTTAGGGCCAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCATTTTCAAATCATCCCCTTTTCCAAAAAACGTTGGATCCCCACTTGTACTACTCCTTCAACCCCATGTCAGGGTCCAAGGGCAAATTCCGGGCCGTTAAATT]
[+] EMBL CF298030             [                                              TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT      AAAAAAAATTCCCTACAAATCTCCCCTCAAATGATACAAATCCCCAGGGGGCCCCACAAGCGTTCAATTTTGCCTGCCGTTGGGTCATATCACAAAGGTTTTAGGGCCAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCATTATCAAATCATCCCCTTTTCCAAAAAACGTTGGATCCCCACTTGTACTACTCCTTCAATCCat                                     ]




>consensus_8234#0
ACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAACCGAAAAAAAATTCCCTACAAATT
TCCCCTCAAATGATCCAAATCCCCAGGGGCCCCGACAAGCGTTCAATTTTGCATGCAGTG
GGGTCATATCACAAAGGTTTTAGGGCCAGGAATGTTTTCATGGGTGGCCAATCGATCGAT
GATCATTTTCAAATCATCCCCTTTTCCAAAAAACGTTGGATCCCCACTTGTACTACTCCT
TCAACCCCATGTCAGGGTCCAAGGGCAAATTCCGGGCCGTTAAATT

consensusID : consensus_8234#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 284
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAAAGGGGAATCCACCAATCGAAAAAAAATTCCCTCCAAATCTCCCCTCAAATGATACAAATCCCCAGGGGGCCCCACAAGCGTTCAATTTTGCCTGCCGTGGGGTCATATCACAAAGGTTTTAGGGACAGGAATGTTTTCATGGGTGGCCCATCGATCGATGATCATTATCAAATCATCCCCTTTTCCAAAAAACGTTGGATCCCCCCTTGTCCTACTCCTTCAACCCAT]

[+] EMBL CF335078             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAAAGGGGAATCCACCAATCGAAAAAAAATTCCCTCCAAATCTCCCCTCAAATGATACAAATCCCCAGGGGGCCCCACAAGCGTTCAATTTTGCCTGCCGTGGGGTCATATCACAAAGGTTTTAGGGACAGGAATGTTTTCATGGGTGGCCCATCGATCGATGATCATTATCAAATCATCCCCTTTTCCAAAAAACGTTGGATCCCCCCTTGTCCTACTCCTTCAACCCAT]




>consensus_8234#1
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAATCAAAGGG
GAATCCACCAATCGAAAAAAAATTCCCTCCAAATCTCCCCTCAAATGATACAAATCCCCA
GGGGGCCCCACAAGCGTTCAATTTTGCCTGCCGTGGGGTCATATCACAAAGGTTTTAGGG
ACAGGAATGTTTTCATGGGTGGCCCATCGATCGATGATCATTATCAAATCATCCCCTTTT
CCAAAAAACGTTGGATCCCCCCTTGTCCTACTCCTTCAACCCAT

consensusID : consensus_8234#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGGCCTGATTAAAAATCAAAGGGGGATCCCCCAATCGAAAAAAAATTCCCTCCAAATCTCCCCTCAAATGATACAAATCCCCAGGGGGCCCCACAAGCGTTCAATTTTGCCTGCCGTTGGGTCATTTCACAAAGGTTTTAGGTCCAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCTTTATCAAATCTTCCCCCTTTCCAAAAAACGTTGGATCCCCACTTGTC]

[+] EMBL CF334083             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGGCCTGATTAAAAATCAAAGGGGGATCCCCCAATCGAAAAAAAATTCCCTCCAAATCTCCCCTCAAATGATACAAATCCCCAGGGGGCCCCACAAGCGTTCAATTTTGCCTGCCGTTGGGTCATTTCACAAAGGTTTTAGGTCCAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCTTTATCAAATCTTCCCCCTTTCCAAAAAACGTTGGATCCCCACTTGTC]




>consensus_8234#2
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGGCCTGA
TTAAAAATCAAAGGGGGATCCCCCAATCGAAAAAAAATTCCCTCCAAATCTCCCCTCAAA
TGATACAAATCCCCAGGGGGCCCCACAAGCGTTCAATTTTGCCTGCCGTTGGGTCATTTC
ACAAAGGTTTTAGGTCCAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCTTTATC
AAATCTTCCCCCTTTCCAAAAAACGTTGGATCCCCACTTGTC

consensusID : consensus_8234#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 247
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACACAGGGACCCCAACAAGCGTTCAATTATGCATGCAGTTGGGTCATATCAAAAAGGTTTTAGGGACAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCATTTTCAAATCATCCCCTTTTCCAAAAAACGTTGGATCCCCACTTGTACTACTCCTTCAACCCATGTCAGGGCCCAAGGGCAAATTC]

[+] EMBL CF302809             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACACAGGGACCCCAACAAGCGTTCAATTATGCATGCAGTTGGGTCATATCAAAAAGGTTTTAGGGACAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCATTTTCAAATCATCCCCTTTTCCAAAAAACGTTGGATCCCCACTTGTACTACTCCTTCAACCCATGTCAGGGCCCAAGGGCAAATTC]




>consensus_8234#3
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACAC
AGGGACCCCAACAAGCGTTCAATTATGCATGCAGTTGGGTCATATCAAAAAGGTTTTAGG
GACAGGAATGTTTTCATGGGTGGCCAATCGATCGATGATCATTTTCAAATCATCCCCTTT
TCCAAAAAACGTTGGATCCCCACTTGTACTACTCCTTCAACCCATGTCAGGGCCCAAGGG
CAAATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8234#0      ACGTCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTT 60
consensus_8234#3      --------------------------------------TTTTTTTTTTTTTTTTTTTTTT 22
consensus_8234#1      --------------------------------------TTTTTTTTTTTTTTTTTTTTTT 22
consensus_8234#2      --------------------------------------TTTTTTTTTTTTTTTTTTTTTT 22
                                                            *********** **********

consensus_8234#0      TTTTTTTTTTTTTTTTTTTTTTTTTTT-------TTTTTTAAA----------------- 96
consensus_8234#3      TTTTTTTTTTTTTTTTTTTTTTTTTTT-------TTTTTTAA------------------ 57
consensus_8234#1      TTTTTTTTTTTTTTTTTTTTTTTTTAA-------AAATCAAAGGGGAATCCACCAA---- 71
consensus_8234#2      TTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAGGCCTGATTAAAAATCAAAGGGGGATCCC 82
                      *************************               **                  

consensus_8234#0      ----CCGAAAAAAAATTCCCTACAAATTTCCCCTCAAATGATCCAAATCCCCAGGGGCCC 152
consensus_8234#3      -------------------------------------------------CACAGGGACCC 68
consensus_8234#1      ----TCGAAAAAAAATTCCCTCCAAATCTCCCCTCAAATGATACAAATCCCCAGGGGGCC 127
consensus_8234#2      CCAATCGAAAAAAAATTCCCTCCAAATCTCCCCTCAAATGATACAAATCCCCAGGGGGCC 142
                                                                       * *****  **

consensus_8234#0      CGACAAGCGTTCAATTTTGCATGCAGTGGGGTCATATCACAAAGGTTTTAGGGCCAGGAA 212
consensus_8234#3      CAACAAGCGTTCAATTATGCATGCAGTTGGGTCATATCAAAAAGGTTTTAGGGACAGGAA 128
consensus_8234#1      CCACAAGCGTTCAATTTTGCCTGCCGTGGGGTCATATCACAAAGGTTTTAGGGACAGGAA 187
consensus_8234#2      CCACAAGCGTTCAATTTTGCCTGCCGTTGGGTCATTTCACAAAGGTTTTAGGTCCAGGAA 202
                      * ************** *** *** ** ******* *** ************  ******

consensus_8234#0      TGTTTTCATGGGTGGCCAATCGATCGATGATCATTTTCAAATCATCCCCTTTTCCAAAAA 272
consensus_8234#3      TGTTTTCATGGGTGGCCAATCGATCGATGATCATTTTCAAATCATCCCCTTTTCCAAAAA 188
consensus_8234#1      TGTTTTCATGGGTGGCCCATCGATCGATGATCATTATCAAATCATCCCCTTTTCCAAAAA 247
consensus_8234#2      TGTTTTCATGGGTGGCCAATCGATCGATGATCTTTATCAAATCTTCCCCCTTTCCAAAAA 262
                      ***************** ************** ** ******* ***** **********

consensus_8234#0      ACGTTGGATCCCCACTTGTACTACTCCTTCAACCCCATGTCAGGGTCCAAGGGCAAATTC 332
consensus_8234#3      ACGTTGGATCCCCACTTGTACTACTCCTTCAACCC-ATGTCAGGGCCCAAGGGCAAATTC 247
consensus_8234#1      ACGTTGGATCCCCCCTTGTCCTACTCCTTCAACCC-AT---------------------- 284
consensus_8234#2      ACGTTGGATCCCCACTTGTC---------------------------------------- 282
                      ************* *****                                         

consensus_8234#0      CGGGCCGTTAAATT 346
consensus_8234#3      --------------
consensus_8234#1      --------------
consensus_8234#2      --------------