cluster # 8238

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Oryza sativa
cluster # 8238 cluster # 8238 Sequences # 5 consensus # 1
see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_8238#0 length = 2641 sequences # 5
consensusID : consensus_8238#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2641
fasta sequence
                              [CCCTCTTTCCGGCCGCACCACCACCGCCTCCCCTCCGTTTCCCCTCCCTCACTTCCCCTTCCGCGACTGCGAGCTTCT---CCGCCGCCGCCGCCGCCCCCAATCGCCCGCCGCCCCGCGCCGCGATTGCCCCTCCCGGTGCCCCTCCCGCAGGCGCCGCCGATTCCCCCGACCCGGGGAAGCCCCGGTTTGCCGCGAGCTGCGTCGCCGGTGGGGGTTTGATTTGGGGCTGATCCGATCGCCCCCCCCTAGATGGTGACCGACGCCGAGGAGGTCTCCCCGACGGCGTCCTCGTCGGAATTGGAGCAGGAGGACGATGACGATGACTGCTACCTGAGCGATCAGGAGGACGACGCCTTGGAGGAGTCCGTCCTCCAGGTGCTGGAGGACGAACGCGACGAGGATTGCCATTGGTCCTCCACCTCCGTGATCACCAAGGAATCCCTCTTGGCGGCGCAGAGGGAGGATCTTAGGAAGGTGATGGAGTTGCTAGGGTTGAGAGAGCACCACGCGCGGACGCTGCTCATCCACTACAGGTGGGATGTCGAAAGGATTTTCGAGCTGCTTGATCAGAAGGGGAGGGACAGGCTCTTCTCGGAGGCTGGTATCCCTCTCCAACCTGCTAATAATCCCGGCTCGCCCTCCTCAACGGAGGTAACCTGCAATGTTTGCTATGACGATGTGCCCCTCTCGGACGCCTCCAAGATGGACTGCGGCCACAACTACTGCAATGAATGCTGGACAGGATATTTCATTGTGAAGATAAATGAGGGACAAAGCCGCCGTATCAAGTGCATGGCTCTGAAGTGCAATACTATCTGTGACGAAGCAATAGTCCGTAAGCTAGTAAATGCAAAGCGGCCAGATATTGCAGAGCGCTTTGAAAGGTTCTTGTTGGAATCTTATATTGAGGACAATGATACAGTCAAGTGGTGCCCAAGCACACCGCATTGTGGAAATGCTATACGCGTCAAAGGTGATATTCACTGTGAGGTGGAATGTACATGTGGACGCCAGTTTTGTTTTAATTGCTCCTCAGAAGCACATTCACCATGTTCCTGTGTGATGTGGGAGCTCTGGATCAAGAAATGCCGTGACGAGTCAGAGACCGTGAATTGGATAACAGTAAATACTAAGCCCTGTCCCAAGTGCCACAAACCTGTTGAGAAGAACGGTGGCTGCAATCTGGTTGCATGTATATGTGGGCAAGCATTCTGCTGGTTATGCGGTGGTGCTACTGGCAGAGATCACACATGGTCAAGTATTAGTGGCCACAGTTGTGGTCGATTCACTGAAGATCAGTCAAAGAAGACAGAGCAAGCTAGGAGAAACCTTTATCGGTACATGCACTACCACAACAGATACAAAGCTCACACTGATTCTCTTAAGCAGGAAGCAAAGCTTAAGGGCGACATCCAGGGGAAGATTTCCATTTCTGAAAACAAGGATTCCAAGATAAAAGATTACTCTTGGGTGATAAATGGATTAAACAGACTTTTCAGGTCAAGGCGGGTTCTTTCATATTCTTATCCTTTTGCATTCTACATGTTTGGTGATGAGATTTTCAAGGATGAGATGACTTCTGATGAAAGAGAACTAAAGCAAAACCTATTTGAGGACCAACAACAACAATTAGAATTCAACGTTGAAAGACTATCTGGTTTCCTTGAGAGGGATTTTCAAAATTTTAGTGATGATGAGGTTATGGATACAATGAAGCATGTCATCAATCTTTCCAATGTGGTTGATAGACTCTGCAAGCAAATGTATCAGTGCATTGAGAATGATTTGTTGTATCCACTGCGTACGCCTCATAATATTGCTCCATACAAATCCAAGGGCCTTGACAGGGCCTCAGAGCTCAATGTTTGTTGGGATTCTTCTGAACAAGGTTTGCAACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTGGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATGGGCGGCCTCACAAGCGAGAAAGAAATGATGCCCATGGTGGGGCTGCCCTTTTTGACCTCAATGTGCCAGCTGAAGTGGCAGACAAGATATGAAACTTAAATAACTTACAGCACATTCCGTTGCAAGTGTACAGCTGACCCGGGCTTCTTCAGCTACATAAAGGAAAACTCTGCTCTTTTTTGTTGCGTTAGAGTGTCGACATGGCAAGTTTAAACGGGGGGCTATAATACCAACAATAGGGTAGCGTTCACTTATTCTCTTGTAAATCATGACAAGAATTGGTGGCAATGTGCAATGTGCACGTTGCATAGCTCTTATAATGCTAAATCTACCCCTCGGGCAAGACGATGGCATTTTGGAAGATAAAATTTTGAAATGTCCTTTTGCAAACATGCAAGGTAATGTATGAAGCATATTGGAAGTGCCTGCGGATGCGTAGCACCTGGAAATTAATAGAAACAAACTAATTGAGTCGCGACATATTCTTGGCCGAGCTTATGGGCTCATCTTATCCGTCAAACCTATTTTGTGGCCAGAAGGCAGCTGATCTCTAGGTCAGTTTTGGTTGACATATATCCAAGCATTCATTGCTGGGATTCTGGGAATGTCTGAATTCCGATTCCCATCTGCTGAAGTGCAAGATGC]

[+] EMBL AK073139             [CCCTCTTTCCGGCCGCACCACCACCGCCTCCCCTCCGTTTCCCCTCCCTCACTTCCCCTTCCGCGACTGCGAGCTTCT   CCGCCGCCGCCGCCGCCCCCAATCGCCCGCCGCCCCGCGCCGCGATTGCCCCTCCCGGTGCCCCTCCCGCAGGCGCCGCCGATTCCCCCGACCCGGGGAAGCCCCGGTTTGCCGCGAGCTGCGTCGCCGGTGGGGGTTTGATTTGGGGCTGATCCGATCGCCCCCCCCTAGATGGTGACCGACGCCGAGGAGGTCTCCCCGACGGCGTCCTCGTCGGAATTGGAGCAGGAGGACGATGACGATGACTGCTACCTGAGCGATCAGGAGGACGACGCCTTGGAGGAGTCCGTCCTCCAGGTGCTGGAGGACGAACGCGACGAGGATTGCCATTGGTCCTCCACCTCCGTGATCACCAAGGAATCCCTCTTGGCGGCGCAGAGGGAGGATCTTAGGAAGGTGATGGAGTTGCTAGGGTTGAGAGAGCACCACGCGCGGACGCTGCTCATCCACTACAGGTGGGATGTCGAAAGGATTTTCGAGCTGCTTGATCAGAAGGGGAGGGACAGGCTCTTCTCGGAGGCTGGTATCCCTCTCCAACCTGCTAATAATCCCGGCTCGCCCTCCTCAACGGAGGTAACCTGCAATGTTTGCTATGACGATGTGCCCCTCTCGGACGCCTCCAAGATGGACTGCGGCCACAACTACTGCAATGAATGCTGGACAGGATATTTCATTGTGAAGATAAATGAGGGACAAAGCCGCCGTATCAAGTGCATGGCTCTGAAGTGCAATACTATCTGTGACGAAGCAATAGTCCGTAAGCTAGTAAATGCAAAGCGGCCAGATATTGCAGAGCGCTTTGAAAGGTTCTTGTTGGAATCTTATATTGAGGACAATGATACAGTCAAGTGGTGCCCAAGCACACCGCATTGTGGAAATGCTATACGCGTCAAAGGTGATATTCACTGTGAGGTGGAATGTACATGTGGACGCCAGTTTTGTTTTAATTGCTCCTCAGAAGCACATTCACCATGTTCCTGTGTGATGTGGGAGCTCTGGATCAAGAAATGCCGTGACGAGTCAGAGACCGTGAATTGGATAACAGTAAATACTAAGCCCTGTCCCAAGTGCCACAAACCTGTTGAGAAGAACGGTGGCTGCAATCTGGTTGCATGTATATGTGGGCAAGCATTCTGCTGGTTATGCGGTGGTGCTACTGGCAGAGATCACACATGGTCAAGTATTAGTGGCCACAGTTGTGGTCGATTCACTGAAGATCAGTCAAAGAAGACAGAGCAAGCTAGGAGAAACCTTTATCGGTACATGCACTACCACAACAGATACAAAGCTCACACTGATTCTCTTAAGCAGGAAGCAAAGCTTAAGGGCGACATCCAGGGGAAGATTTCCATTTCTGAAAACAAGGATTCCAAGATAAAAGATTACTCTTGGGTGATAAATGGATTAAACAGACTTTTCAGGTCAAGGCGGGTTCTTTCATATTCTTATCCTTTTGCATTCTACATGTTTGGTGATGAGATTTTCAAGGATGAGATGACTTCTGATGAAAGAGAACTAAAGCAAAACCTATTTGAGGACCAACAACAACAATTAGAATTCAACGTTGAAAGACTATCTGGTTTCCTTGAGAGGGATTTTCAAAATTTTAGTGATGATGAGGTTATGGATACAATGAAGCATGTCATCAATCTTTCCAATGTGGTTGATAGACTCTGCAAGCAAATGTATCAGTGCATTGAGAATGATTTGTTGTATCCACTGCGTACGCCTCATAATATTGCTCCATACAAATCCAAGGGCCTTGACAGGGCCTCAGAGCTCAATGTTTGTTGGGATTCTTCTGAACAAGGTTTGCAACCAATTAACTACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTGGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATGGGCGGCCTCACAAGCGAGAAAGAAATGATGCCCATGGTGGGGTTGCCCTTTTTGACCTCAATGTGCCAGCTGAAGTGGCAGACAAGATATGAAACTTAAATAACTTACAGCACATTCCGTTGCAAGTGTACAGCTGACCCGGGCTTCTTCAGCTACATAAAGGAAAACTCTGCTCTTTTTTGTTGCGTTAGAGTGTCGACATGGCAAGTTTAAACGGGGGGCTATAATACCAACAATAGGGTAGCGTTCACTTATTCTCTTGTAAATCATGACAAGAATTGGTGGCAATGTGCAATGTGCACGTTGCATAGCTCTTATAATGCTAAATCTACCCCTCGGGCAAGACGATGGCATTTTGGAAGATAAAATTTTGAAATGTCCTTTTGCAAACATGCAAGGTAATGTATGAAGCATATTGGAAGTGCCTGCGGATGCGTAGCACCTGGAAATTAATAGAAACAAACTAA                                                                                                                                                                                  ]
[+] EMBL CB630754             [                   ACCACCGCCTCCCCTCCGTTTCCCCTCCCTCACTTCCCCTTCCGCGACTGCGAGCTTCTCCGCCGCCGCCGCCGCCGCCCCCAATCGCCCGCCGCCCCGCGCCGCGATTGCCCCTCCCGGTGCCCCTCCCGCAGGCGCCGCCGATTCCCCCGACCCGGGGAAGCCCCGGTTTGCCGCGAGCTGCGTCGCCGGTGGGGGTTTGATTTGGGGCTGATCCGATCGGCCCCCCCTAGATGGTGACCGACGCCGAGGAGGTCTCCCCGACGGCGTCCTCGTCGGAATTGGAGCAGGAGGACGATGACGATGACTGCTACCTGAGCGATCAGGAGGACGACGCCTTGGAGGAGTCCGTCCTCCAGGTGCTGGAGGACGAACGCGACGAGGATTGCCATTGGTCCTCCACCTCCGTGATCACCAAGGAATCCCTCTTGGCGGCGCAGAGGGAGGATCTTAGGAAGGTGATGGAGTTGCTAGGGTTGAGAGAGCACCACGCGCGGACGCTGCTCATCCACTACAGGTGGGATGTCGAAAGGATTTTCGAGCTGCTTGATCAGAAGGGGAGGGACAGGCTCTTCTCGGAGGCTGGTATCCCTCTCCAACCTGCTAATAATGCCGGCTCGCCCTCCTCAACGGAGGTAACCTGCAATGTTTGCTATGACGATGTGCCCCTCTCGGACGCCTCCAAGATGGACTGCGGCCACAACTACTGCAATGAATGCTGGACAGGATATTTCATTGTGAAGATAAATGAGGGACAAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB630755             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CAACGTTGAAAGACTATCTGGTTTCCTTGAGAGGGATTTTCAAAATTTTAGTGATGATGAGGTTATGGATACAATGAAGCATGTCATCAATCTTTCCAATGTGGTTGATAGACTCTGCAAGCAAATGTATCAGTGCATTGAGAATGATTTGTTGTATCCACTGCGTACGCCTCATAATATTGCTCCATACAAATCCAAGGGCCTTGACAGGGCCTCAGAGCTCAATGTTTGTTGGGATTCTTCTGAACAAGGTTTGCAACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTGGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTCTAATAACAATGGGCGGCCTCACAAGCGAGAAAGAAATGATGCCCATGGTGGGGCTGCCCTTTTTGACCTCAATGTGCCAGCTGAAGTGGCAGACAAGATATGAAACTTAAATAACTTACAGCACATTCCGTTGCAAGTGTACAGCTGACCCGGGCTTCTTCAGCTACATAAAGGAAAACTCTGCTCTTTTTTGTTGCGTTAGAGTGTCGACATGGCAAGTTTAAACGGGGGGCTATAATACCAACAATAGGGTAGCGTTCACTTATTCTCTTGTAAATCATGACAAGAATTGGTGGCAATGTGCAATGTGCACGTTGCATAGCTCTTATAATGCTAAATCTACCCCTCGGGCAAGACGATGGCGTTTTGGAAGATAAAATTTTGAAATGTCCTTTaa                                                                                                                                                                                                                                                                   ]
[-] EMBL CB627053             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TCAAAATTTTAGTGATGATGAGGTTATGGATACAATGAAGCATGTCATCAATCTTTCCAATGTGGTTGATAGACTCTGCAAGCAAATGTATCAGTGCATTGAGAATGATTTGTTGTATCCACTGCGTACGCCTCATAATATTGCTCCATACAAATCCAAGGGCCTTGACAGGGCCTCAGAGCTCAATGTTTGTTGGGATTCTTCTGAACAAGGTTTGCAACCAATTAAATACAGTCAAGATGAACACAAGAGTCAGCCTGGTTTATCTGGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCAAGTTTTAATAACAATGGGCGGCCTCACAAGCGAGAAAGAAATGATGCCCATGGTGGGGCTGCCCTTTTTGACCTCAATGTGCCAGCTGAAGTGGCAGACAAGATATGAAACTTAAATAACTTACAGCACATTCCGTTGCAAGTGTACAGCTGACCCGGGCTTTTTCAGCTACATAAAGGAAAACTCTGCTCTTTTTTGTTGCGTTAGAGTGTCGACATGGCAAGTTTAAACGGGGGGCTATAATACCAACAATAGGGTAGCGTTCACTTATTCTCTTGTAAATCATGACAAGAATTGGTGGCAATGTGCAATGTGCACGTTGCATAGCTCTTATAATGCTAAATCTACCCCTCGGGCAAGACGATGGCATTTTGGAAGATAAAATTTTGAAATGTCCTTTTGCAAACATGCAAGGTAATGTATGAAGCATATTGGAAGTGCCTGCGGATGCTTAGCACCTGGAAATTAATAGAAACAAACTAAT                                                                                                                                                                                 ]
[+] EMBL CF306495             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ggGCCCTTTTTGACCTCAATGTGCCAGCTGAAGTGGCAGACAAGATATGAAACTTAAATAACTTACAGCACATTCCGTTGCAAGTGTACAGCTGACCCGGGCTTCTTCAGCTACATAAAGGAAAACTCTGCTCTTTTTTGTTGCGTTAGAGTGTCGACATGGCAAGTTTAAACGGGGGGCTATAATACCAACAATAGGGTAGCGTTCACTTATTCTCTTGTAAATCATGACAAGAATTGGTGGCAATGTGCAATGTGCACGTTGCATAGCTCTTATAATGCTAAATCTACCCCTCGGGCAAGACGATGGCATTTTGGAAGATAAAATTTTGAAATGTCCTTTTGCAAACATGCAAGGTAATGTATGAAGCATATTGGAAGTGCCTGCGGATGCGTAGCACCTGGAAATTAATAGAAACAAACTAATTGAGTCGCGACATATTCTTGGCCGAGCTTATGGGCTCATCTTATCCGTCAAACCTATTTTGTGGCCAGAAGGCAGCTGATCTCTAGGTCAGTTTTGGTTGACATATATCCAAGCATTCATTGCTGGGATTCTGGGAATGTCTGAATTCCGATTCCCATCTGCTGAAGTGCAAGATGC]




>consensus_8238#0
CCCTCTTTCCGGCCGCACCACCACCGCCTCCCCTCCGTTTCCCCTCCCTCACTTCCCCTT
CCGCGACTGCGAGCTTCTCCGCCGCCGCCGCCGCCCCCAATCGCCCGCCGCCCCGCGCCG
CGATTGCCCCTCCCGGTGCCCCTCCCGCAGGCGCCGCCGATTCCCCCGACCCGGGGAAGC
CCCGGTTTGCCGCGAGCTGCGTCGCCGGTGGGGGTTTGATTTGGGGCTGATCCGATCGCC
CCCCCCTAGATGGTGACCGACGCCGAGGAGGTCTCCCCGACGGCGTCCTCGTCGGAATTG
GAGCAGGAGGACGATGACGATGACTGCTACCTGAGCGATCAGGAGGACGACGCCTTGGAG
GAGTCCGTCCTCCAGGTGCTGGAGGACGAACGCGACGAGGATTGCCATTGGTCCTCCACC
TCCGTGATCACCAAGGAATCCCTCTTGGCGGCGCAGAGGGAGGATCTTAGGAAGGTGATG
GAGTTGCTAGGGTTGAGAGAGCACCACGCGCGGACGCTGCTCATCCACTACAGGTGGGAT
GTCGAAAGGATTTTCGAGCTGCTTGATCAGAAGGGGAGGGACAGGCTCTTCTCGGAGGCT
GGTATCCCTCTCCAACCTGCTAATAATCCCGGCTCGCCCTCCTCAACGGAGGTAACCTGC
AATGTTTGCTATGACGATGTGCCCCTCTCGGACGCCTCCAAGATGGACTGCGGCCACAAC
TACTGCAATGAATGCTGGACAGGATATTTCATTGTGAAGATAAATGAGGGACAAAGCCGC
CGTATCAAGTGCATGGCTCTGAAGTGCAATACTATCTGTGACGAAGCAATAGTCCGTAAG
CTAGTAAATGCAAAGCGGCCAGATATTGCAGAGCGCTTTGAAAGGTTCTTGTTGGAATCT
TATATTGAGGACAATGATACAGTCAAGTGGTGCCCAAGCACACCGCATTGTGGAAATGCT
ATACGCGTCAAAGGTGATATTCACTGTGAGGTGGAATGTACATGTGGACGCCAGTTTTGT
TTTAATTGCTCCTCAGAAGCACATTCACCATGTTCCTGTGTGATGTGGGAGCTCTGGATC
AAGAAATGCCGTGACGAGTCAGAGACCGTGAATTGGATAACAGTAAATACTAAGCCCTGT
CCCAAGTGCCACAAACCTGTTGAGAAGAACGGTGGCTGCAATCTGGTTGCATGTATATGT
GGGCAAGCATTCTGCTGGTTATGCGGTGGTGCTACTGGCAGAGATCACACATGGTCAAGT
ATTAGTGGCCACAGTTGTGGTCGATTCACTGAAGATCAGTCAAAGAAGACAGAGCAAGCT
AGGAGAAACCTTTATCGGTACATGCACTACCACAACAGATACAAAGCTCACACTGATTCT
CTTAAGCAGGAAGCAAAGCTTAAGGGCGACATCCAGGGGAAGATTTCCATTTCTGAAAAC
AAGGATTCCAAGATAAAAGATTACTCTTGGGTGATAAATGGATTAAACAGACTTTTCAGG
TCAAGGCGGGTTCTTTCATATTCTTATCCTTTTGCATTCTACATGTTTGGTGATGAGATT
TTCAAGGATGAGATGACTTCTGATGAAAGAGAACTAAAGCAAAACCTATTTGAGGACCAA
CAACAACAATTAGAATTCAACGTTGAAAGACTATCTGGTTTCCTTGAGAGGGATTTTCAA
AATTTTAGTGATGATGAGGTTATGGATACAATGAAGCATGTCATCAATCTTTCCAATGTG
GTTGATAGACTCTGCAAGCAAATGTATCAGTGCATTGAGAATGATTTGTTGTATCCACTG
CGTACGCCTCATAATATTGCTCCATACAAATCCAAGGGCCTTGACAGGGCCTCAGAGCTC
AATGTTTGTTGGGATTCTTCTGAACAAGGTTTGCAACCAATTAAATACAGTCAAGATGAA
CACAAGAGTCAGCCTGGTTTATCTGGTTCATCTATTTTTGGAAAGCGGCAACTTGGCTCA
AGTTCTAATAACAATGGGCGGCCTCACAAGCGAGAAAGAAATGATGCCCATGGTGGGGCT
GCCCTTTTTGACCTCAATGTGCCAGCTGAAGTGGCAGACAAGATATGAAACTTAAATAAC
TTACAGCACATTCCGTTGCAAGTGTACAGCTGACCCGGGCTTCTTCAGCTACATAAAGGA
AAACTCTGCTCTTTTTTGTTGCGTTAGAGTGTCGACATGGCAAGTTTAAACGGGGGGCTA
TAATACCAACAATAGGGTAGCGTTCACTTATTCTCTTGTAAATCATGACAAGAATTGGTG
GCAATGTGCAATGTGCACGTTGCATAGCTCTTATAATGCTAAATCTACCCCTCGGGCAAG
ACGATGGCATTTTGGAAGATAAAATTTTGAAATGTCCTTTTGCAAACATGCAAGGTAATG
TATGAAGCATATTGGAAGTGCCTGCGGATGCGTAGCACCTGGAAATTAATAGAAACAAAC
TAATTGAGTCGCGACATATTCTTGGCCGAGCTTATGGGCTCATCTTATCCGTCAAACCTA
TTTTGTGGCCAGAAGGCAGCTGATCTCTAGGTCAGTTTTGGTTGACATATATCCAAGCAT
TCATTGCTGGGATTCTGGGAATGTCTGAATTCCGATTCCCATCTGCTGAAGTGCAAGATG
C
clustalw multiple alignements is not computed in this case