cluster # 824

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Oryza sativa
cluster # 824 cluster # 824 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_824#0 length = 1648 sequences # 1

consensus_824#1 length = 681 sequences # 1

consensusID : consensus_824#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1648
fasta sequence

                              [TCTCGCGTCGATCCAAACAAGCTCCAAAAACATCAAAAACCCCACGTACATTTCTTTACTCGCCCGGAGAAGCTACCGCGCGCTTGCTACCTCTCGCGTCTCCGTCTCTGCGTTGCATTGCATTGCATTGCTCGTTCTGTCATCGGATCCGAGTCTGGGATGGCGGCAATGGCGGGAGGGAGTAAGCCGCTGAGGCTCAAGGACCTCCTGGAGCTGGACTGCGAGTCCTGCAGCGCCGCTGGCTTCCGCTGCTACCCTCGCCGCCTCTGCGTCGCCGGCGGCGCGGCTGAGGCGGCGGCGCCGCCAATGCGGCACCGCCTCGTCGCCGACCGGTCGTCGTCCGCAATGCGGCGGCCCAAGCTGTCCAGCCTCTCGAAGAGCCTGTCCCGGCGGCTCAGGGGAGGCTTCTGGAGGCGGCGCGAGGAAGAAGACGAGGAAGCCGCCGCCGCCGCCGCGGCGCCGCCGGCGACGGCGAGCTCCACCGCCCCCGCCGTGGCCAGCTGCTGCAGCTCCAGCTCCGACTCCGAGACGTCCGAGTCCAGCAATTCCACAGGCGGGAGGAAGTCGCGCTCCCACTCCGACTACTCAGAAATCTCGTCAGCCAGCTCCGACGACAGCCTCCACGCCGCCGGCGAGCCCTCCACCACCGGAGCCGACCACGAGGTGATGAAGAGGGGGTCCAAGGAGGAGGATGAGGAGGAGGAGGCTGACGACAAGGAGCAGCTCAGTCCGGTGGGCGTCATGGACTTCCCCTTCGACGAAGACGACGACGACGCCGCCGCCGTCGACGAGGACGAGAGGGTCGCCGCCGGCGCGTGCTCGTTCTCTTTCAGCGACAGCCTCGCCCAGCTCCAGAGGAGAAAGATGCAACTGCAGCCCAAGATCCGACGGCTCGGGAGCATGGCGGAGCTCAGCGGCGTGGATCTCGAGGCACGCTTCGCCGCCTCGGAGTCCGACCGCCTTGCCGGCATCGTCCCAGTACAGCACCAGTGCATTACCGACGACGTAGCGGCGGCGCCGCCACGACACGACGATCATCGGAACGACGGCGTCTCCCAAAAAGATCCCGACGACGACGAGGACAGCCTCCTAGACCTACTGGCGGACACCGTGTCGGTCGGCGTGGTGGATGACGTCACCGAGAGGCTCCTCCTCGACTTCTTCGTCGAGGCGAAGTGCAGCTCCAGAAATATTGAGTTGCATGCACCGACCAGTCTGTTACGAGAGAGGAGACGGCGAGAGAACGGCGAAACGATGAGACTTGCCAAGGCCTGGCTTGAGGGCACGGGAACACCGTGGACGTTGAACGACGTGCTGTACCACGGCGAGGATGGCATGGCGGAGATGGAGCGGAGCCGGCGGTGGCGGCCATGGCGATGGACGAGCTGTTGCACGAGCTGGTGAGTGACCTGATTGCGTTGCCGAAGTAGTTCTTTGTTTGGATGTCAAAGTTGTCAAATCGAGTGTAATGTAAACGTGAGATAGAACAGATTCAGTGAAGGTTGATATAGGGGGGTAGTGAGTTAGGGGCAGTGGAATAAAGCAGATGCATCTGTATATAGTTTTGTCAGAGTGGCAATGGAAACAAGAAGATTACTGTTCTGTTTGGATGTAAATGTACACTCTACAGGTCATCAACCTAAGGCCA]

[+] EMBL AK106233             [TCTCGCGTCGATCCAAACAAGCTCCAAAAACATCAAAAACCCCACGTACATTTCTTTACTCGCCCGGAGAAGCTACCGCGCGCTTGCTACCTCTCGCGTCTCCGTCTCTGCGTTGCATTGCATTGCATTGCTCGTTCTGTCATCGGATCCGAGTCTGGGATGGCGGCAATGGCGGGAGGGAGTAAGCCGCTGAGGCTCAAGGACCTCCTGGAGCTGGACTGCGAGTCCTGCAGCGCCGCTGGCTTCCGCTGCTACCCTCGCCGCCTCTGCGTCGCCGGCGGCGCGGCTGAGGCGGCGGCGCCGCCAATGCGGCACCGCCTCGTCGCCGACCGGTCGTCGTCCGCAATGCGGCGGCCCAAGCTGTCCAGCCTCTCGAAGAGCCTGTCCCGGCGGCTCAGGGGAGGCTTCTGGAGGCGGCGCGAGGAAGAAGACGAGGAAGCCGCCGCCGCCGCCGCGGCGCCGCCGGCGACGGCGAGCTCCACCGCCCCCGCCGTGGCCAGCTGCTGCAGCTCCAGCTCCGACTCCGAGACGTCCGAGTCCAGCAATTCCACAGGCGGGAGGAAGTCGCGCTCCCACTCCGACTACTCAGAAATCTCGTCAGCCAGCTCCGACGACAGCCTCCACGCCGCCGGCGAGCCCTCCACCACCGGAGCCGACCACGAGGTGATGAAGAGGGGGTCCAAGGAGGAGGATGAGGAGGAGGAGGCTGACGACAAGGAGCAGCTCAGTCCGGTGGGCGTCATGGACTTCCCCTTCGACGAAGACGACGACGACGCCGCCGCCGTCGACGAGGACGAGAGGGTCGCCGCCGGCGCGTGCTCGTTCTCTTTCAGCGACAGCCTCGCCCAGCTCCAGAGGAGAAAGATGCAACTGCAGCCCAAGATCCGACGGCTCGGGAGCATGGCGGAGCTCAGCGGCGTGGATCTCGAGGCACGCTTCGCCGCCTCGGAGTCCGACCGCCTTGCCGGCATCGTCCCAGTACAGCACCAGTGCATTACCGACGACGTAGCGGCGGCGCCGCCACGACACGACGATCATCGGAACGACGGCGTCTCCCAAAAAGATCCCGACGACGACGAGGACAGCCTCCTAGACCTACTGGCGGACACCGTGTCGGTCGGCGTGGTGGATGACGTCACCGAGAGGCTCCTCCTCGACTTCTTCGTCGAGGCGAAGTGCAGCTCCAGAAATATTGAGTTGCATGCACCGACCAGTCTGTTACGAGAGAGGAGACGGCGAGAGAACGGCGAAACGATGAGACTTGCCAAGGCCTGGCTTGAGGGCACGGGAACACCGTGGACGTTGAACGACGTGCTGTACCACGGCGAGGATGGCATGGCGGAGATGGAGCGGAGCCGGCGGTGGCGGCCATGGCGATGGACGAGCTGTTGCACGAGCTGGTGAGTGACCTGATTGCGTTGCCGAAGTAGTTCTTTGTTTGGATGTCAAAGTTGTCAAATCGAGTGTAATGTAAACGTGAGATAGAACAGATTCAGTGAAGGTTGATATAGGGGGGTAGTGAGTTAGGGGCAGTGGAATAAAGCAGATGCATCTGTATATAGTTTTGTCAGAGTGGCAATGGAAACAAGAAGATTACTGTTCTGTTTGGATGTAAATGTACACTCTACAGGTCATCAACCTAAGGCCA]




>consensus_824#0
TCTCGCGTCGATCCAAACAAGCTCCAAAAACATCAAAAACCCCACGTACATTTCTTTACT
CGCCCGGAGAAGCTACCGCGCGCTTGCTACCTCTCGCGTCTCCGTCTCTGCGTTGCATTG
CATTGCATTGCTCGTTCTGTCATCGGATCCGAGTCTGGGATGGCGGCAATGGCGGGAGGG
AGTAAGCCGCTGAGGCTCAAGGACCTCCTGGAGCTGGACTGCGAGTCCTGCAGCGCCGCT
GGCTTCCGCTGCTACCCTCGCCGCCTCTGCGTCGCCGGCGGCGCGGCTGAGGCGGCGGCG
CCGCCAATGCGGCACCGCCTCGTCGCCGACCGGTCGTCGTCCGCAATGCGGCGGCCCAAG
CTGTCCAGCCTCTCGAAGAGCCTGTCCCGGCGGCTCAGGGGAGGCTTCTGGAGGCGGCGC
GAGGAAGAAGACGAGGAAGCCGCCGCCGCCGCCGCGGCGCCGCCGGCGACGGCGAGCTCC
ACCGCCCCCGCCGTGGCCAGCTGCTGCAGCTCCAGCTCCGACTCCGAGACGTCCGAGTCC
AGCAATTCCACAGGCGGGAGGAAGTCGCGCTCCCACTCCGACTACTCAGAAATCTCGTCA
GCCAGCTCCGACGACAGCCTCCACGCCGCCGGCGAGCCCTCCACCACCGGAGCCGACCAC
GAGGTGATGAAGAGGGGGTCCAAGGAGGAGGATGAGGAGGAGGAGGCTGACGACAAGGAG
CAGCTCAGTCCGGTGGGCGTCATGGACTTCCCCTTCGACGAAGACGACGACGACGCCGCC
GCCGTCGACGAGGACGAGAGGGTCGCCGCCGGCGCGTGCTCGTTCTCTTTCAGCGACAGC
CTCGCCCAGCTCCAGAGGAGAAAGATGCAACTGCAGCCCAAGATCCGACGGCTCGGGAGC
ATGGCGGAGCTCAGCGGCGTGGATCTCGAGGCACGCTTCGCCGCCTCGGAGTCCGACCGC
CTTGCCGGCATCGTCCCAGTACAGCACCAGTGCATTACCGACGACGTAGCGGCGGCGCCG
CCACGACACGACGATCATCGGAACGACGGCGTCTCCCAAAAAGATCCCGACGACGACGAG
GACAGCCTCCTAGACCTACTGGCGGACACCGTGTCGGTCGGCGTGGTGGATGACGTCACC
GAGAGGCTCCTCCTCGACTTCTTCGTCGAGGCGAAGTGCAGCTCCAGAAATATTGAGTTG
CATGCACCGACCAGTCTGTTACGAGAGAGGAGACGGCGAGAGAACGGCGAAACGATGAGA
CTTGCCAAGGCCTGGCTTGAGGGCACGGGAACACCGTGGACGTTGAACGACGTGCTGTAC
CACGGCGAGGATGGCATGGCGGAGATGGAGCGGAGCCGGCGGTGGCGGCCATGGCGATGG
ACGAGCTGTTGCACGAGCTGGTGAGTGACCTGATTGCGTTGCCGAAGTAGTTCTTTGTTT
GGATGTCAAAGTTGTCAAATCGAGTGTAATGTAAACGTGAGATAGAACAGATTCAGTGAA
GGTTGATATAGGGGGGTAGTGAGTTAGGGGCAGTGGAATAAAGCAGATGCATCTGTATAT
AGTTTTGTCAGAGTGGCAATGGAAACAAGAAGATTACTGTTCTGTTTGGATGTAAATGTA
CACTCTACAGGTCATCAACCTAAGGCCA

consensusID : consensus_824#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 681
fasta sequence

                              [CCAGTGCATTACCGACGANGTAGGGGGGGNGCCGCCACGACACGACGATTATGGGAACGANGGCGTCTCCCAAAAAGATCCCGACGACGACGAGGACAGCCTCCTAGATCTACTGGCGGACACCGTGTCGGTTGGCGTGGTGGATGACGTCACCGAGAGGCTCCTCCTCGACTTTTTTGTCGAGGCGAAGTGCAGCTCCAGAAATANTGAGTTGCATGCACCGACCAGTCTGTTACGAGAGAGGAGACGGCGAGAGAACGGCGAAACGATGAGACTTGCCAAGGCCTGGCTTGAGGGCACGGGAACACCGTGGACGTTGAACGACGTGCTGTACCACGGCGAGGATGTCATGGCGGAGATGGAGCGGAGCCGGCGGTGGATGCACGCCGGCGAGGAGGAGCGCGAGGCCGGCGTGGTGGTGGCGGCCATGGCGATGGACGAGCTGTTGCACGAGCTGGTGAGTGACCTGATTGCGTTGCCGAAGTAGTTCTTTGTTTGGATGTCAAAGTTGTCAAATCGAGTGTAATGTAAACGTGAGATAGAACAGATTCAGTGAAGGTTGATATAGGGGGGTAGTGAGTTAGGGGCAGTGGAATAAAGCAGATGCATCTGTATATAGTTTTGTCAGAGTAGCAATGGAAACAAGATTACTGTTCTGTTTGGATGTAAAAAAAAAAAAAA]

[-] EMBL CA759115             [CCAGTGCATTACCGACGANGTAGGGGGGGNGCCGCCACGACACGACGATTATGGGAACGANGGCGTCTCCCAAAAAGATCCCGACGACGACGAGGACAGCCTCCTAGATCTACTGGCGGACACCGTGTCGGTTGGCGTGGTGGATGACGTCACCGAGAGGCTCCTCCTCGACTTTTTTGTCGAGGCGAAGTGCAGCTCCAGAAATANTGAGTTGCATGCACCGACCAGTCTGTTACGAGAGAGGAGACGGCGAGAGAACGGCGAAACGATGAGACTTGCCAAGGCCTGGCTTGAGGGCACGGGAACACCGTGGACGTTGAACGACGTGCTGTACCACGGCGAGGATGTCATGGCGGAGATGGAGCGGAGCCGGCGGTGGATGCACGCCGGCGAGGAGGAGCGCGAGGCCGGCGTGGTGGTGGCGGCCATGGCGATGGACGAGCTGTTGCACGAGCTGGTGAGTGACCTGATTGCGTTGCCGAAGTAGTTCTTTGTTTGGATGTCAAAGTTGTCAAATCGAGTGTAATGTAAACGTGAGATAGAACAGATTCAGTGAAGGTTGATATAGGGGGGTAGTGAGTTAGGGGCAGTGGAATAAAGCAGATGCATCTGTATATAGTTTTGTCAGAGTAGCAATGGAAACAAGATTACTGTTCTGTTTGGATGTAAAAAAAAAAAAAA]




>consensus_824#1
CCAGTGCATTACCGACGANGTAGGGGGGGNGCCGCCACGACACGACGATTATGGGAACGA
NGGCGTCTCCCAAAAAGATCCCGACGACGACGAGGACAGCCTCCTAGATCTACTGGCGGA
CACCGTGTCGGTTGGCGTGGTGGATGACGTCACCGAGAGGCTCCTCCTCGACTTTTTTGT
CGAGGCGAAGTGCAGCTCCAGAAATANTGAGTTGCATGCACCGACCAGTCTGTTACGAGA
GAGGAGACGGCGAGAGAACGGCGAAACGATGAGACTTGCCAAGGCCTGGCTTGAGGGCAC
GGGAACACCGTGGACGTTGAACGACGTGCTGTACCACGGCGAGGATGTCATGGCGGAGAT
GGAGCGGAGCCGGCGGTGGATGCACGCCGGCGAGGAGGAGCGCGAGGCCGGCGTGGTGGT
GGCGGCCATGGCGATGGACGAGCTGTTGCACGAGCTGGTGAGTGACCTGATTGCGTTGCC
GAAGTAGTTCTTTGTTTGGATGTCAAAGTTGTCAAATCGAGTGTAATGTAAACGTGAGAT
AGAACAGATTCAGTGAAGGTTGATATAGGGGGGTAGTGAGTTAGGGGCAGTGGAATAAAG
CAGATGCATCTGTATATAGTTTTGTCAGAGTAGCAATGGAAACAAGATTACTGTTCTGTT
TGGATGTAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_824#0      TCTCGCGTCGATCCAAACAAGCTCCAAAAACATCAAAAACCCCACGTACATTTCTTTACT 60
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      CGCCCGGAGAAGCTACCGCGCGCTTGCTACCTCTCGCGTCTCCGTCTCTGCGTTGCATTG 120
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      CATTGCATTGCTCGTTCTGTCATCGGATCCGAGTCTGGGATGGCGGCAATGGCGGGAGGG 180
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      AGTAAGCCGCTGAGGCTCAAGGACCTCCTGGAGCTGGACTGCGAGTCCTGCAGCGCCGCT 240
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      GGCTTCCGCTGCTACCCTCGCCGCCTCTGCGTCGCCGGCGGCGCGGCTGAGGCGGCGGCG 300
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      CCGCCAATGCGGCACCGCCTCGTCGCCGACCGGTCGTCGTCCGCAATGCGGCGGCCCAAG 360
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      CTGTCCAGCCTCTCGAAGAGCCTGTCCCGGCGGCTCAGGGGAGGCTTCTGGAGGCGGCGC 420
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      GAGGAAGAAGACGAGGAAGCCGCCGCCGCCGCCGCGGCGCCGCCGGCGACGGCGAGCTCC 480
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      ACCGCCCCCGCCGTGGCCAGCTGCTGCAGCTCCAGCTCCGACTCCGAGACGTCCGAGTCC 540
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      AGCAATTCCACAGGCGGGAGGAAGTCGCGCTCCCACTCCGACTACTCAGAAATCTCGTCA 600
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      GCCAGCTCCGACGACAGCCTCCACGCCGCCGGCGAGCCCTCCACCACCGGAGCCGACCAC 660
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      GAGGTGATGAAGAGGGGGTCCAAGGAGGAGGATGAGGAGGAGGAGGCTGACGACAAGGAG 720
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      CAGCTCAGTCCGGTGGGCGTCATGGACTTCCCCTTCGACGAAGACGACGACGACGCCGCC 780
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      GCCGTCGACGAGGACGAGAGGGTCGCCGCCGGCGCGTGCTCGTTCTCTTTCAGCGACAGC 840
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      CTCGCCCAGCTCCAGAGGAGAAAGATGCAACTGCAGCCCAAGATCCGACGGCTCGGGAGC 900
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      ATGGCGGAGCTCAGCGGCGTGGATCTCGAGGCACGCTTCGCCGCCTCGGAGTCCGACCGC 960
consensus_824#1      ------------------------------------------------------------
                                                                                 

consensus_824#0      CTTGCCGGCATCGTCCCAGTACAGCACCAGTGCATTACCGACGACGTAGCGGCGGCGCCG 1020
consensus_824#1      --------------------------CCAGTGCATTACCGACGANGTAGGGGGGGNGCCG 34
                                               ****************** **** ** ** ****

consensus_824#0      CCACGACACGACGATCATCGGAACGACGGCGTCTCCCAAAAAGATCCCGACGACGACGAG 1080
consensus_824#1      CCACGACACGACGATTATGGGAACGANGGCGTCTCCCAAAAAGATCCCGACGACGACGAG 94
                     *************** ** ******* *********************************

consensus_824#0      GACAGCCTCCTAGACCTACTGGCGGACACCGTGTCGGTCGGCGTGGTGGATGACGTCACC 1140
consensus_824#1      GACAGCCTCCTAGATCTACTGGCGGACACCGTGTCGGTTGGCGTGGTGGATGACGTCACC 154
                     ************** *********************** *********************

consensus_824#0      GAGAGGCTCCTCCTCGACTTCTTCGTCGAGGCGAAGTGCAGCTCCAGAAATATTGAGTTG 1200
consensus_824#1      GAGAGGCTCCTCCTCGACTTTTTTGTCGAGGCGAAGTGCAGCTCCAGAAATANTGAGTTG 214
                     ******************** ** **************************** *******

consensus_824#0      CATGCACCGACCAGTCTGTTACGAGAGAGGAGACGGCGAGAGAACGGCGAAACGATGAGA 1260
consensus_824#1      CATGCACCGACCAGTCTGTTACGAGAGAGGAGACGGCGAGAGAACGGCGAAACGATGAGA 274
                     ************************************************************

consensus_824#0      CTTGCCAAGGCCTGGCTTGAGGGCACGGGAACACCGTGGACGTTGAACGACGTGCTGTAC 1320
consensus_824#1      CTTGCCAAGGCCTGGCTTGAGGGCACGGGAACACCGTGGACGTTGAACGACGTGCTGTAC 334
                     ************************************************************

consensus_824#0      CACGGCGAGGATGGCATGGCGGAGATGGAGCGGAGCCGGCGGTGG--------------- 1365
consensus_824#1      CACGGCGAGGATGTCATGGCGGAGATGGAGCGGAGCCGGCGGTGGATGCACGCCGGCGAG 394
                     ************* *******************************               

consensus_824#0      ----------------------------CGGCCATGGCGATGGACGAGCTGTTGCACGAG 1397
consensus_824#1      GAGGAGCGCGAGGCCGGCGTGGTGGTGGCGGCCATGGCGATGGACGAGCTGTTGCACGAG 454
                                                 ********************************

consensus_824#0      CTGGTGAGTGACCTGATTGCGTTGCCGAAGTAGTTCTTTGTTTGGATGTCAAAGTTGTCA 1457
consensus_824#1      CTGGTGAGTGACCTGATTGCGTTGCCGAAGTAGTTCTTTGTTTGGATGTCAAAGTTGTCA 514
                     ************************************************************

consensus_824#0      AATCGAGTGTAATGTAAACGTGAGATAGAACAGATTCAGTGAAGGTTGATATAGGGGGGT 1517
consensus_824#1      AATCGAGTGTAATGTAAACGTGAGATAGAACAGATTCAGTGAAGGTTGATATAGGGGGGT 574
                     ************************************************************

consensus_824#0      AGTGAGTTAGGGGCAGTGGAATAAAGCAGATGCATCTGTATATAGTTTTGTCAGAGTGGC 1577
consensus_824#1      AGTGAGTTAGGGGCAGTGGAATAAAGCAGATGCATCTGTATATAGTTTTGTCAGAGTAGC 634
                     ********************************************************* **

consensus_824#0      AATGGAAACAAGAAGATTACTGTTCTGTTTGGATGTAAATGTACACTCTACAGGTCATCA 1637
consensus_824#1      AATGGAAACAAG---ATTACTGTTCTGTTTGGATGTAAAAAAAAAAAAAA---------- 681
                     ************   ************************   * *    *          

consensus_824#0      ACCTAAGGCCA 1648
consensus_824#1      -----------