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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8241#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1957 fasta sequence
[GTCGTCGCCTCGCCTCGCCTCGCCTTCCCCCGCGTGGCCTCGCCGTCGGATCGAGCCACGCCGCCGCCGCCGCCGCGTCGCGGATCCCCACGCTCGCCGAGAGGAGGAGGAGGTGATGCCGCTTCCCGCTTGCCCCCACCCTCTCCTCTCGTCTCGCGGTTGCTTGGGTGCTTGTATGCTGGGTTTGTGCGATTCGGATTTGGGTTCGGGGCCGGTGGTCGATTCGGAGGGGGCACTGGCCGATTCAGGCGTAGATTTGGTTTGTTTGTTTATGGCGATCTGTTGTTTGCTAGTTGTTCATACGCGGGTTGGTTTTCCTAGAGAATTGGGATTTTTTTTAATTGTTCTGCGATTACGGTAGAAATAGATCGGGCTTATGGATAATCCCGTCTTCTTCTAGCGTGTGATTTTATCCTCCAACGTGGGAGATATTCCTAGATGTTTTATTTCCTTGTGTTGTTTATTTATGCTTAGATTGTTGATTCCATCCTTGTGGATCGTCAGCATCTTATTCTAGATGATCCTATATAATTGTGTGAAACAAAATTGAGGTTGTTGGGAGGGTTTCTGATCATCAGCTGTCCTCTTTACCGGCACGAATTTGGGGAATCTTTCTTGGTTGTGTTCTTGTTGGCTTATACCTTTTTTATGTTTTGCTCAAACTCATGAGATTTTTATCGTTTAATGCTGGATCCTTATGTATGACCACATGCTAGTAGCTGGCGGAGCAACTTCGTAATTGTTGCTAGTAGCCATTATATTACATAGTACTCCTAATATATTCTATCAGTTTTGCATAGCTATTTCTAGCATTGTTGGTGATTGTAGTTTCATTGGCAATTGCAGCTTCTTGCACTTTGAAGTAACAGCAAGATGGCAGCCAATGTTGGGGAATCTACAAGCAGCGGCACCAATGGCGATGCAGCTGGGGGGAGCTTTGAATGCAATATCTGCTTTGAATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTACAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGAAGAGGATAAGCTCGTTCCCCTTTATGGGCGTGGCAAGGACCGCGTCGATCCAAGGTCAAAGAACATACCCGAGGCTGACATTCCTAACCGCCCAACTGGCCAGA-GGCCTGCCACAGCTCCACAGGCCGATCCTAACAACAATTTTGCCCATGCCAATCCTAATGCTAATGCCAATCCATGGTTCAT-GGGCACTGGAGTACCATTGGCTAATGCAC-GGTGGGGGAATTA-TGCATTC-TCAGCTGCGTTTGGAGGCCTATTCCCTATGCTTAGCTTCCAAGTGCATGGATTTCCAGATGCAAATCCTTATGCACAGCCTGCTGGGTTTCACTATGGGTATGGCCATGGTCATGGATTCCATGGCGGACATATGGGTCATGCCGCCCACGGTGTCCCTCGACAAGGACCACTGGAGCAACCGCAGCAGGCAGACATCTACCTGAAGGCCCTGCTAATCATGGTTGGATTTCTTGTGGTTGCAAGCCTTCTTGCATTTTAAGATTGTTAACAGATTCACCTGGTGATAGAAGATGGTAAAAGAATTGCCAGCATATCCCTGTGGCGTTGTGGTGCGTGCAGTTTCTTCCTGCCAAATGTGGCATAAGTTATTTTGCGTATTTACATGAAGTGTTCATAGAATATTTGCATGTAGATGTAGGATAAGCATCTGGCTTTTTATAGCCTCATATGTAGTACTATAATTAGGAGGAGCCATTTTATTTTCTTTTCTTTTTTTAGTTTTGACTGTTTTGATGGATATGATGTACAATTATTGGGATGTTGTCTCCATGTGTTGTATACATGTAAGAATAGTTCTTCCCAAACTCTTGCTTGCAATTTGCACCAATTTCCAGTTTATATACATTGATGCTTGACAAAAA]
[+] EMBL AK068558 [GTCGTCGCCTCGCCTCGCCTCGCCTTCCCCCGCGTGGCCTCGCCGTCGGATCGAGCCACGCCGCCGCCGCCGCCGCGTCGCGGATCCCCACGCTCGCCGAGAGGAGGAGGAGGTGATGCCGCTTCCCGCTTGCCCCCACCCTCTCCTCTCGTCTCGCGGTTGCTTGGGTGCTTGTATGCTGGGTTTGTGCGATTCGGATTTGGGTTCGGGGCCGGTGGTCGATTCGGAGGGGGCACTGGCCGATTCAGGCGTAGATTTGGTTTGTTTGTTTATGGCGATCTGTTGTTTGCTAGTTGTTCATACGCGGGTTGGTTTTCCTAGAGAATTGGGATTTTTTTTAATTGTTCTGCGATTACGGTAGAAATAGATCGGGCTTATGGATAATCCCGTCTTCTTCTAGCGTGTGATTTTATCCTCCAACGTGGGAGATATTCCTAGATGTTTTATTTCCTTGTGTTGTTTATTTATGCTTAGATTGTTGATTCCATCCTTGTGGATCGTCAGCATCTTATTCTAGATGATCCTATATAATTGTGTGAAACAAAATTGAGGTTGTTGGGAGGGTTTCTGATCATCAGCTGTCCTCTTTACCGGCACGAATTTGGGGAATCTTTCTTGGTTGTGTTCTTGTTGGCTTATACCTTTTTTATGTTTTGCTCAAACTCATGAGATTTTTATCGTTTAATGCTGGATCCTTATGTATGACCACATGCTAGTAGCTGGCGGAGCAACTTCGTAATTGTTGCTAGTAGCCATTATATTACATAGTACTCCTAATATATTCTATCAGTTTTGCATAGCTATTTCTAGCATTGTTGGTGATTGTAGTTTCATTGGCAATTGCAGCTTCTTGCACTTTGAAGTAACAGCAAGATGGCAGCCAATGTTGGGGAATCTACAAGCAGCGGCACCAATGGCGATGCAGCTGGGGGGAGCTTTGAATGCAATATCTGCTTTGAATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTACAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGAAGAGGATAAGCTCGTTCCCCTTTATGGGCGTGGCAAGGACCGCGTCGATCCAAGGTCAAAGAACATACCCGAGGCTGACATTCCTAACCGCCCAACTGGCCAGA GGCCTGCCACAGCTCCACAGGCCGATCCTAACAACAATTTTGCCCATGCCAATCCTAATGCTAATGCCAATCCATGGTTCAT GGGCACTGGAGTACCATTGGCTAATGCAC GGTGGGGGAATTA TGCATTC TCAGCTGCGTTTGGAGGCCTATTCCCTATGCTTAGCTTCCAAGTGCATGGATTTCCAGATGCAAATCCTTATGCACAGCCTGCTGGGTTTCACTATGGGTATGGCCATGGTCATGGATTCCATGGCGGACATATGGGTCATGCCGCCCACGGTGTCCCTCGACAAGGACCACTGGAGCAACCGCAGCAGGCAGACATCTACCTGAAGGCCCTGCTAATCATGGTTGGATTTCTTGTGGTTGCAAGCCTTCTTGCATTTTAAGATTGTTAACAGATTCACCTGGTGATAGAAGATGGTAAAAGAATTGCCAGCATATCCCTGTGGCGTTGTGGTGCGTGCAGTTTCTTCCTGCCAAATGTGGCATAAGTTATTTTGCGTATTTACATGAAGTGTTCATAGAATATTTGCATGTAGATGTAGGATAAGCATCTGGCTTTTTATAGCCTCATATGTAGTACTATAATTAGGAGGAGCCATTTTATTTTCTTTTCTTTTTTTAGTTTTGACTGTTTTGATGGATATGATGTACAATTATTGGGATGTTGTCTCCATGTGTTGTATACATGTAAGAAT ]
[+] EMBL C26521 [ GCAATATCTGCTTTGAATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTACAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGAAGAGGATAAGCTCGTTCCCCTTTATGGGCGTGGCAAGGACCGCGTCGATCCAAGGTCAAAGAACATACCCGAGGCTGACATTCCTAACCGCCCAACTGGCCAGACGGNC NCACAGCTCCACAGGCCGATCCTAACAACAATTTTGCCCATGCCAATCCTAATGCTAATGCCAATCCATGGTTCATGGGGCACTGGAGTACCATTGGCTAATGCACGGGTGGGGGAATTATTGCATTCTTAAGCTGCGTTTGGAGGCCTATTNCCTATGCTTAGCTTCC AGTGCATGGATTTCCAGATGCAAAT ]
[+] EMBL AU077935 [ TTATTTTGCGTATTTACATGAAGTGTTCATNGAATATTTGCATGTAGANGTAGGATAAGCATCTGGCTTTTTATAGCCTCATATGTAGTACTATAATTAGGAGGAGCCATTTTATTTNCTTTTCTTNTTTTAGTTTTGACTGTTTTGATGGATATGATGTACAATTATTGGGATGTTGTCTCCATGTGTTGTATACATGTAAGAATAGTTCTTCCCAAACTCTTGCTTGCAATTTGCACCAATTTCCAGTTTATATACATTGATGCTTGACAAAAA]
consensusID : consensus_8241#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 710 fasta sequence
[CCTCGCCTCGCCTTCCCCCGCGTGGCCTCGCCGTCGGATCGAGCCACGCCGCCGCCGCCGCCGCGTCGCGGATCCCCACGCTCGCCGAGANGAGGAGGAGCTTCTTGCACTTTGAAGAAACAGCAAGATGGCAGCCAATGTTGGGGAATCTACAAGCAGCGGCACCAATGGCGATGCAGCTGGGGGGAGCTTTGAATGCAATATCTGCTTTGAATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTACAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGAAGAGGATAAGCTCGTTCCCCTTTATGGGCGTNGCAAGGACCGCGTCGATCCAAGGTCAAAGAACATACCCGAGGCTGAC-ATTCCTAACCGCCCAACTGGCCAGAGGCTGCCACAGCTCCACAGGNCGATCCTAACAACAATTTTGCCCATGCCAATCCTAATGCTAATGCCAATCCATGGTTCATGGGCATGGAGTACCATTGGCTAATGCACGGTGGGGGAATTATGCATTCTCAGCNNGCGTTTGGGAAGCCTATTTCCCTANGCTTAACTTTCCAAGTGGCATGGATTTCCAAGATGNAAATCCNTATGCAACAGCCTTGCTTGGGTTTCAACTATGGGGTATGGNCANTGGTCATGGATTCCAATGGNCGGAC]
[+] EMBL AU068650 [CCTCGCCTCGCCTTCCCCCGCGTGGCCTCGCCGTCGGATCGAGCCACGCCGCCGCCGCCGCCGCGTCGCGGATCCCCACGCTCGCCGAGANGAGGAGGAGCTTCTTGCACTTTGAAGAAACAGCAAGATGGCAGCCAATGTTGGGGAATCTACAAGCAGCGGCACCAATGGCGATGCAGCTGGGGGGAGCTTTGAATGCAATATCTGCTTTGAATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTACAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGAAGAGGATAAGCTCGTTCCCCTTTATGGGCGTNGCAAGGACCGCGTCGATCCAAGGTCAAAGAACATACCCGAGGCTGAC ATTCCTAACCGCCCAACTGGCCAGAGGCTGCCACAGCTCCACAGGNCGATCCTAACAACAATTTTGCCCATGCCAATCCTAATGCTAATGCCAATCCATGGTTCATGGGCATGGAGTACCATTGGCTAATGCACGGTGGGGGAATTATGCATTCTCAGCNNGCGTTTGGGAAGCCTATTTCCCTANGCTTAACTTTCCAAGTGGCATGGATTTCCAAGATGNAAATCCNTATGCAACAGCCTTGCTTGGGTTTCAACTATGGGGTATGGNCANTGGTCATGGATTCCAATGGNCGGAC]
[+] EMBL C72285 [ CCCCGCGTGGCCTCGCCGTCGGATCGAGCCACGCCGCCGCCGCCGCCGCGTCGCGNATCCCCACGCTCGCCGAGAGGAGGAGGAGCTTCTTGCACTTTGAAGAAACAGCAAGATGGCAGCCAATGTTGGGGAATCTACAAGCAGCGGCACCAATGGCGATGCAGCTGGGGGGAGCTTTGAATGCAATATCTGCTTTGAATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTACAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGAAGAGGATAAGCTCGTTNCCCTTTATGGGCGTGGCAAGGACCGCGTCGATCCAAGGTCAAAG ACATACCCGAGGCTGACAATTCTAAACCG CCAACTGGCCAGAGcttg ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8241#0 GTCGTCGCCTCGCCTCGCCTCGCCTTCCCCCGCGTGGCCTCGCCGTCGGATCGAGCCACG 60
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 CCGCCGCCGCCGCCGCGTCGCGGATCCCCACGCTCGCCGAGAGGAGGAGGAGGTGATGCC 120
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 GCTTCCCGCTTGCCCCCACCCTCTCCTCTCGTCTCGCGGTTGCTTGGGTGCTTGTATGCT 180
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 GGGTTTGTGCGATTCGGATTTGGGTTCGGGGCCGGTGGTCGATTCGGAGGGGGCACTGGC 240
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 CGATTCAGGCGTAGATTTGGTTTGTTTGTTTATGGCGATCTGTTGTTTGCTAGTTGTTCA 300
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 TACGCGGGTTGGTTTTCCTAGAGAATTGGGATTTTTTTTAATTGTTCTGCGATTACGGTA 360
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 GAAATAGATCGGGCTTATGGATAATCCCGTCTTCTTCTAGCGTGTGATTTTATCCTCCAA 420
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 CGTGGGAGATATTCCTAGATGTTTTATTTCCTTGTGTTGTTTATTTATGCTTAGATTGTT 480
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 GATTCCATCCTTGTGGATCGTCAGCATCTTATTCTAGATGATCCTATATAATTGTGTGAA 540
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 ACAAAATTGAGGTTGTTGGGAGGGTTTCTGATCATCAGCTGTCCTCTTTACCGGCACGAA 600
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 TTTGGGGAATCTTTCTTGGTTGTGTTCTTGTTGGCTTATACCTTTTTTATGTTTTGCTCA 660
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 AACTCATGAGATTTTTATCGTTTAATGCTGGATCCTTATGTATGACCACATGCTAGTAGC 720
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 TGGCGGAGCAACTTCGTAATTGTTGCTAGTAGCCATTATATTACATAGTACTCCTAATAT 780
consensus_8241#1 --------------------CCTCGCC--TCGCC-TTCCCCCGCGTGGCCTCGCCGTCGG 37
* ** * *** ** * * * *
consensus_8241#0 ATTCTATCAGTTTTGCATAGCTATTTCTAGCATTGTTGGTGATTGTAGTTTCATTGGCAA 840
consensus_8241#1 ATCGAGCCACGCCGCCGCCGCCGCC----GCGTCGCGGATCCCCACGCTCGCCGAGANGA 93
** ** * ** ** * * * * * * * *
consensus_8241#0 TT-GCAGCTTCTTGCACTTTGAAGTAACAGCAAGATGGCAGCCAATGTTGGGGAATCTAC 899
consensus_8241#1 GGAGGAGCTTCTTGCACTTTGAAGAAACAGCAAGATGGCAGCCAATGTTGGGGAATCTAC 153
* ******************* ***********************************
consensus_8241#0 AAGCAGCGGCACCAATGGCGATGCAGCTGGGGGGAGCTTTGAATGCAATATCTGCTTTGA 959
consensus_8241#1 AAGCAGCGGCACCAATGGCGATGCAGCTGGGGGGAGCTTTGAATGCAATATCTGCTTTGA 213
************************************************************
consensus_8241#0 ATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTA 1019
consensus_8241#1 ATTGCCACAAGAACCAATAGTTACTCTCTGTGGCCACCTCTTCTGCTGGCCATGTATTTA 273
************************************************************
consensus_8241#0 CAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGA 1079
consensus_8241#1 CAGGTGGTTGCACATCCACGCACACTCTCCAGAGTGCCCGGTGTGCAAAGCTGTCGTTGA 333
************************************************************
consensus_8241#0 AGAGGATAAGCTCGTTCCCCTTTATGGGCGTGGCAAGGACCGCGTCGATCCAAGGTCAAA 1139
consensus_8241#1 AGAGGATAAGCTCGTTCCCCTTTATGGGCGTNGCAAGGACCGCGTCGATCCAAGGTCAAA 393
******************************* ****************************
consensus_8241#0 GAACATACCCGAGGCTGACATTCCTAACCGCCCAACTGGCCAGAGGCCTGCCACAGCTCC 1199
consensus_8241#1 GAACATACCCGAGGCTGACATTCCTAACCGCCCAACTGGCCAGAGGC-TGCCACAGCTCC 452
*********************************************** ************
consensus_8241#0 ACAGGCCGATCCTAACAACAATTTTGCCCATGCCAATCCTAATGCTAATGCCAATCCATG 1259
consensus_8241#1 ACAGGNCGATCCTAACAACAATTTTGCCCATGCCAATCCTAATGCTAATGCCAATCCATG 512
***** ******************************************************
consensus_8241#0 GTTCATGGGCACTGGAGTACCATTGGCTAATGCACGGTGGGGGAATTATGCATTCTCAGC 1319
consensus_8241#1 GTTCATGGGCA-TGGAGTACCATTGGCTAATGCACGGTGGGGGAATTATGCATTCTCAGC 571
*********** ************************************************
consensus_8241#0 TG-CGTTTGG-AGGCCTATT-CCCTATGCTTAGCTT-CCAAGTG-CATGGATTTCCA-GA 1373
consensus_8241#1 NNGCGTTTGGGAAGCCTATTTCCCTANGCTTAACTTTCCAAGTGGCATGGATTTCCAAGA 631
******* * ******* ***** ***** *** ******* ************ **
consensus_8241#0 TGCAAATCCTTATGCA-CAGCCTG--CTGGGTTTCA-CTATGGG-TATGGCCAT-GGTCA 1427
consensus_8241#1 TGNAAATCCNTATGCAACAGCCTTGCTTGGGTTTCAACTATGGGGTATGGNCANTGGTCA 691
** ****** ****** ****** ********* ******* ***** ** *****
consensus_8241#0 TGGATTCCATGGCGGACATATGGGTCATGCCGCCCACGGTGTCCCTCGACAAGGACCACT 1487
consensus_8241#1 TGGATTCCA--ATGGNCGGAC--------------------------------------- 710
********* ** * *
consensus_8241#0 GGAGCAACCGCAGCAGGCAGACATCTACCTGAAGGCCCTGCTAATCATGGTTGGATTTCT 1547
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 TGTGGTTGCAAGCCTTCTTGCATTTTAAGATTGTTAACAGATTCACCTGGTGATAGAAGA 1607
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 TGGTAAAAGAATTGCCAGCATATCCCTGTGGCGTTGTGGTGCGTGCAGTTTCTTCCTGCC 1667
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 AAATGTGGCATAAGTTATTTTGCGTATTTACATGAAGTGTTCATAGAATATTTGCATGTA 1727
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 GATGTAGGATAAGCATCTGGCTTTTTATAGCCTCATATGTAGTACTATAATTAGGAGGAG 1787
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 CCATTTTATTTTCTTTTCTTTTTTTAGTTTTGACTGTTTTGATGGATATGATGTACAATT 1847
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 ATTGGGATGTTGTCTCCATGTGTTGTATACATGTAAGAATAGTTCTTCCCAAACTCTTGC 1907
consensus_8241#1 ------------------------------------------------------------
consensus_8241#0 TTGCAATTTGCACCAATTTCCAGTTTATATACATTGATGCTTGACAAAAA 1957
consensus_8241#1 --------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||