cluster # 8246

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Oryza sativa
cluster # 8246 cluster # 8246 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8246#0 length = 715 sequences # 3

consensus_8246#1 length = 405 sequences # 1
consensus_8246#2 length = 298 sequences # 1

consensusID : consensus_8246#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 715
fasta sequence

                              [AGAGCCCCTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTCGAGTCGCATTCTGCTCGATGCTCCTCCTTTTCCTCTTTCTCCTCTACGAGCGCCGCCCGGCGGAGGGCCTGGTGGCCGGCGGCGTGCCGGCGCGGCGGCGCGGCGCTAGGCGATGCGGCAGCACAGCGGCCTGGGCAGCCTCTTGGGCGGGGGGCCGCGCGCGGCGGCGGCGGCCGGCGGGGCCGCGCCCCGCGGCGACGGGCAGGCGGCCGGCGGGGCCACGCCTCCCGGCGGCGGCGCCCCGCGGCGGCGGGCAGGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCAGCGAGCGGCCGTTTTTTTTTATAATCTGTGATTATTGAGATGTATAATTTTGTGATTCATTGGACATTTGTATAGATCTGAGATGTATAATCTGTGATGTATTTTGTATTGTTTAGGATTTGGGATGTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTGATGTGGAGTTGAGATGTTATTTGATTTGGGGATTTGGGGATGTGCATGGCGCTCGATTCGGGAGAAAATAAAAAGAAAATCTCTAAAAAGGGAA]

[+] EMBL CB681429             [AGAGCCCCTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTCGAGTCGCATTCTGCTCGATGCTCCTCCTTTTCCTCTTTCTCCTCTACCAGCGCCTCCCGGCGGAGGGGCTGGGGGCCGGCGGCGTGCCGGCGCGGGGGCGCGGCGCTAGGGGATGCGGCACCGCAGGGGCCTGGGCAGCCTCTTGGGCGGGGGGCCGCGCGCGGCGGGGGCGGCCGGCGGGGCCGCGCCCCGCGGCGACGGGCACGCGGCCGGCGGGGCCACGCCTCCCGGCGGCGGCGCCCCGCGGCGGCGGGCAGGCGGGCGACGGCCGGTTGGGCCACGCCCGGCGGCAGCGAGCGGCCGTTTTTTTTTATAATCTGTGATTATTGAGATGTATCATTTTGTGATTCATTGGACATTTGTATAGATCTGAGATGTATAATCTGTGATGTATTTTGTATTGTTTAGGATTTGGGATGTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTG                                                                                              ]
[-] EMBL CB681430             [                                                                                                                                                                                          CCTCCTTTTCCTCTTTCTCCTCTACGAGCGCCGACGGGCGGAGGGCCTGGTGGCCGGCGGCGTGCCGGCGCGGCGGCGCGGCGCTAGGCGATGCGGCAGCACAGCGGCCTGGGCAGCCTCTTGGGCGGGGGGCCGCGCGCGGCGGCGGCGGCCGGCGGGGCCGCGCCCCGCGGCGACGGGCAGGCGGCCGGCGGGGCCACGCCTCCCGGCGGCGGCGCCCCGCGGCGGCGGGCAGGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCAGCGAGCGGCCGTTTTTTTTTATAATCTGTGATTATTGAGATGTATAATTTTGTGATTCATTGGACATTTGTATAGATCTGAGATGTATAATCTGTGATGTATTTTGTATTGTTTAGGATTTGGGATGTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTGATGTGGAGTTGAGATGTTATTTGATTTGGGGATTTGGGGATGTGCATGGCGCTCGATTCGGGAGAAAATAAAAAGAAAATCTCTAAAAAGGGAA]
[+] EMBL CB660178             [                                                                                                                                                                                         gCCTCCTTTTCCTCTTTCTCCTCTACGAGCGCCGCCTTGAGGAGGGCCTGGTGGCCGGCGGCGTGCCGGCGCGGCGGCGCGGAGCTAGGCGATGCGGCAGCACAGCGGCCTGGGCAGCCTCTTGGGCGGGGGGCCGCGCGCGGCGGCGGCGGCCGGCGGGGCCGCGCCCCGCGGCGACGGGCAGGCGGCCGGCGGGGCCACGCCTCCCGGCGGCGGCGCCCCGCGGCGGCGGGCAGGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCAGCGAGCGGCCGTTTTTTTTTATAATCTGTGATTATTGAGATGTATAATTTTGTGATTCATTGGACATTTGTATAGATCTGAGATGTATAATCTGTGATGTATTTTGCATTGTTTAGGATTTGGGATGTATTTGATTTGCGTGTATGAGTAACTTTAAGATTTGTGATGCGGAGTTGAGATGTTATTTGA                                                                      ]




>consensus_8246#0
AGAGCCCCTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTCGAGTCGCATTCTGCTC
GATGCTCCTCCTTTTCCTCTTTCTCCTCTACGAGCGCCGCCCGGCGGAGGGCCTGGTGGC
CGGCGGCGTGCCGGCGCGGCGGCGCGGCGCTAGGCGATGCGGCAGCACAGCGGCCTGGGC
AGCCTCTTGGGCGGGGGGCCGCGCGCGGCGGCGGCGGCCGGCGGGGCCGCGCCCCGCGGC
GACGGGCAGGCGGCCGGCGGGGCCACGCCTCCCGGCGGCGGCGCCCCGCGGCGGCGGGCA
GGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCAGCGAGCGGCCGTTTTTTTTTATAA
TCTGTGATTATTGAGATGTATAATTTTGTGATTCATTGGACATTTGTATAGATCTGAGAT
GTATAATCTGTGATGTATTTTGTATTGTTTAGGATTTGGGATGTATTTGATTTGTGTGTA
TGAGTAACTTTAAGATTTGTGATGTGGAGTTGAGATGTTATTTGATTTGGGGATTTGGGG
ATGTGCATGGCGCTCGATTCGGGAGAAAATAAAAAGAAAATCTCTAAAAAGGGAA

consensusID : consensus_8246#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 405
fasta sequence

                              [GTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTGATGTGGAGTTGAGATGTTATTTGATTTGGGGATTTGGGGATGTGCATGCCACTCGATTCGGGAGAAAATAAAAAGAAAATAAAAGAAAAGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCGTTCCTTACCAAGGGGCAATTTCTTTAAACCCTGCGGGATTATCCCTTTTAGGGGGGGTTAATTTTAACCTGGGGGAAATCAGGGCCATACCTGTTCCCTGGGGAAAATGGTTTTCCGTTCACATTTCCCCACAAATTACAACCCGAAACCTTAAAGGGTAAACCCGGGGGGGCCTAAGGAGGGACCTACCT]

[+] EMBL CF300957             [GTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTGATGTGGAGTTGAGATGTTATTTGATTTGGGGATTTGGGGATGTGCATGCCACTCGATTCGGGAGAAAATAAAAAGAAAATAAAAGAAAAGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCGTTCCTTACCAAGGGGCAATTTCTTTAAACCCTGCGGGATTATCCCTTTTAGGGGGGGTTAATTTTAACCTGGGGGAAATCAGGGCCATACCTGTTCCCTGGGGAAAATGGTTTTCCGTTCACATTTCCCCACAAATTACAACCCGAAACCTTAAAGGGTAAACCCGGGGGGGCCTAAGGAGGGACCTACCT]




>consensus_8246#1
GTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTGATGTGGAGTTGAGATGTTATT
TGATTTGGGGATTTGGGGATGTGCATGCCACTCGATTCGGGAGAAAATAAAAAGAAAATA
AAAGAAAAGAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCGTTCCTTACCAAGGGGCAATTTCTTTA
AACCCTGCGGGATTATCCCTTTTAGGGGGGGTTAATTTTAACCTGGGGGAAATCAGGGCC
ATACCTGTTCCCTGGGGAAAATGGTTTTCCGTTCACATTTCCCCACAAATTACAACCCGA
AACCTTAAAGGGTAAACCCGGGGGGGCCTAAGGAGGGACCTACCT

consensusID : consensus_8246#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 298
fasta sequence

                              [CCGGCGGGGCCGCGCCCCGCGGCGACGGGCAGGCGGCCGGCGGGGCCNCGCCTNCCGGCGGCGGCGCCCCCCGGCGGCGGGCAGGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCANCGANCGGCCGTTTTTTTTTATAATCTGTGATTATTNAGATGTATAATTTTGTGATTCNTTGGACATTTGTATAGATCTGAGATGTATAATCTGTGATGTATTTTGTATTGTTTAGGATTTGGGATGTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTNAAAAAAAAAAAAAA]

[+] EMBL AU173843             [CCGGCGGGGCCGCGCCCCGCGGCGACGGGCAGGCGGCCGGCGGGGCCNCGCCTNCCGGCGGCGGCGCCCCCCGGCGGCGGGCAGGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCANCGANCGGCCGTTTTTTTTTATAATCTGTGATTATTNAGATGTATAATTTTGTGATTCNTTGGACATTTGTATAGATCTGAGATGTATAATCTGTGATGTATTTTGTATTGTTTAGGATTTGGGATGTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTNAAAAAAAAAAAAAA]




>consensus_8246#2
CCGGCGGGGCCGCGCCCCGCGGCGACGGGCAGGCGGCCGGCGGGGCCNCGCCTNCCGGCG
GCGGCGCCCCCCGGCGGCGGGCAGGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCAN
CGANCGGCCGTTTTTTTTTATAATCTGTGATTATTNAGATGTATAATTTTGTGATTCNTT
GGACATTTGTATAGATCTGAGATGTATAATCTGTGATGTATTTTGTATTGTTTAGGATTT
GGGATGTATTTGATTTGTGTGTATGAGTAACTTTAAGATTTGTNAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8246#0      AGAGCCCCTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 60
consensus_8246#2      ------------------------------------------------------------
consensus_8246#1      ------------------------------------------------------------
                                                                                  

consensus_8246#0      GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA 120
consensus_8246#2      ------------------------------------------------------------
consensus_8246#1      ------------------------------------------------------------
                                                                                  

consensus_8246#0      GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTCGAGTCGCATTCTGCTC 180
consensus_8246#2      ------------------------------------------------------------
consensus_8246#1      ------------------------------------------------------------
                                                                                  

consensus_8246#0      GATGCTCCTCCTTTTCCTCTTTCTCCTCTACGAGCGCCGCCCGGCGGAGGGCCTGGTGGC 240
consensus_8246#2      ------------------------------------------------------------
consensus_8246#1      ------------------------------------------------------------
                                                                                  

consensus_8246#0      CGGCGGCGTGCCGGCGCGGCGGCGCGGCGCTAGGCGATGCGGCAGCACAGCGGCCTGGGC 300
consensus_8246#2      ------------------------------------------------------------
consensus_8246#1      -------------------------GTATTTGATTTGTGTGTATGAGTAACTTTAAGATT 35
                                                                                  

consensus_8246#0      AGCCTCTTGGGCGGGGGGCCGCGCGCGGCGGCGGCGGCCGGCGGGGC-CGCGCCCCGCGG 359
consensus_8246#2      -------------------------------------CCGGCGGGGC-CGCGCCCCGCGG 22
consensus_8246#1      TGTGATGTGGAGTTGAGATGTTATTTGATTTGGGGATTTGGGGATGTGCATGCCACTCGA 95
                                                             ** *  *  *  *** * ** 

consensus_8246#0      CGACGGGCAGGCGGCCGGCGGGGCCACGCCTCCCGGCGGCGGCGCCCCGCGGCGGCGGGC 419
consensus_8246#2      CGACGGGCAGGCGGCCGGCGGGGCCNCGCCTNCCGGCGGCGGCGCCCCCCGGCGGCGGGC 82
consensus_8246#1      TT-CGGGAGAAAATAAAAAGAAAATAAAAGAAAAGAAAGAAAAAAAAAAAAAAAAAAAAA 154
                         ****            *              *   *                     

consensus_8246#0      AGGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCAGCGAGCGGCCGTTTTTTTTTATA 479
consensus_8246#2      AGGCGGCCGACGGCCGGTTGGGCCACGCCCGGCGGCANCGANCGGCCGTTTTTTTTTATA 142
consensus_8246#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTGTTTTCCCG 214
                      *        *              *           *   *     *  ** ****    

consensus_8246#0      ATCTGTGATTATTGAGATGTATAATTTTGTGATTCATTGGA--CATTTGTATAGATCTGA 537
consensus_8246#2      ATCTGTGATTATTNAGATGTATAATTTTGTGATTCNTTGGA--CATTTGTATAGATCTGA 200
consensus_8246#1      TTCC----TTACCAAGGGGCAATTTCTTTAAACCCTGCGGGATTATCCCTTTTAGGGGGG 270
                       **     ***   **  * *   * **   *  *   **    **   * *      * 

consensus_8246#0      GATG--TATAATCTGTGATGTATTTTGTATTGTTTAGGATTTGGGATGTATTTGATTTGT 595
consensus_8246#2      GATG--TATAATCTGTGATGTATTTTGTATTGTTTAGGATTTGGGATGTATTTGATTTGT 258
consensus_8246#1      GTTAATTTTAACCTG-GGGGAAATCAGGGCCATACCTGTTCCCTGGGGAAAATGGTTT-T 328
                      * *   * *** *** *  * * *  *     *    * *    *  * *  ** *** *

consensus_8246#0      GTGTATGAGTAACTTTAAGATTTGTGATGTGGAGTTGAGATGTTATTTGATTTGGGGATT 655
consensus_8246#2      GTGTATGAGTAACTTTAAGATTTGTNAAAAAAAAAAAAAA-------------------- 298
consensus_8246#1      CCGTTCACATTTCCCCACAAATTACAACCCGAAACCTTAAAGGGTAAACCCGGGGGGGCC 388
                        **     *  *   *  * **   *     *      *                    

consensus_8246#0      TGGGGATGTGCATGGCGCTCGATTCGGGAGAAAATAAAAAGAAAATCTCTAAAAAGGGAA 715
consensus_8246#2      ------------------------------------------------------------
consensus_8246#1      TAAGGAGGGACCTACCT------------------------------------------- 405