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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1680 fasta sequence
[CTAGGGTTTGGAGGCGGCGTGAGGTCCGGGAGGCGACGCGAGGTCCGGGAGGCGGCTCTAGGGTGGAGATCCAGGAGCAGCATATCTCCAGCCGCTGCCGCTCTCCATCCCGCCCTCGGTCGCCGACGATCTCCATCCAGCTTCAGCCGCCACCGGTCTCCATCCCGTCCTCAGCCGCCGCCGGTCTCCATCCCGCTTCAGCCGCCGCCACCGCTCTCCTTCCCGCTCTCCATCCCAGCCAGTCGCCGGCGCTCGCCATCTCTCCTTCCTCGCTTCGGATTCACCGGTTGCGGGAGAGGGCAAGGTCGAGGGCAACAGCCCGGACACCAAGAAGCAGGAGAGGCACAGGCGTGTGGGGTTGGCAAAAGTAAAGCTGAAGGAGTTGATATTACTCAAGTGATAAAATCAGTTCGAGAATGGCGGATGAAATTAAAAGGAGGAGAGAAGAGGACGATGATATGATGCTTTTTGTTTTTCCTGCGATGTATATGCTGTGCGGTATGACAAATAGTGAGAAAATACCTAGACATATCTCAAGACTATCCGGTAAAGAGCGGCTTCAAGAAATCCTTGAAGGACATGTAATGGATTGTAAAGTTGCATTCCGCATGGAGCCTCATGTTTTCAAGACAATAGCGAATTATCTTAGAGAGGAAAAGTTGTTAAAGGATAGTAGAGGCTTGAGGATTGAGGAGAAGCTTGGGATATTTATGTTCATGCTCGCTCACAATGCAAGCTTTCAAGATCTACAGTATGAATTCAAGCATAGTGGGTCTACACTTCATCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACCAAACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCAAAATGTGATAGTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGGGTCTGCAACCGATGCTAGGGTCCTTAGATCAGCAATGAATAGTGGCTTTCAAGTCCCAAATGGTAAATTTTTTCTAGTAGATGGTGGTTATGCCAACACACCATAGTTCATTACTCCTTATCGTGGTGTTCGGTACCATCTAAAGGAGTTTGGACGTGGTCATCGTAGACCTAGAGACTACAAGGAGTTATTCAATCATCGCCATGCCATTCTGAGAAACCATGTAGAGAGAGCTCTAGGGGTTCTAAAGAAGCGATTTCCCATCCTGAAAGTAGGCACTTTCCATCGGATAAAGAACCAAGTGCGGATTCCAGCAGCTGCTGCGGTGTTCCACAACATGATCCGGTTGCTTAATGGTGATGAGGGCTGGTTGGACAACCAACCTGATAATATAGAACCTACTAATTTTGTCGATCTACCAGAAGGTGACAGTGAATACCGAAATGATGTGCCATCTCTTAGCAATCAAATGATCAGTGGGAATAATATTAGAGATATGATTGCTAAGAAGATGTGGGAAGATTATGTTCGTAACTAGCAAGAATAGTATAGATAATATTTTGGTTTTGCATTATTTGTATTTATTTATGCAATCAACATTTATGATATGGACA]
[+] EMBL AK111398 [CTAGGGTTTGGAGGCGGCGTGAGGTCCGGGAGGCGACGCGAGGTCCGGGAGGCGGCTCTAGGGTGGAGATCCAGGAGCAGCATATCTCCAGCCGCTGCCGCTCTCCATCCCGCCCTCGGTCGCCGACGATCTCCATCCAGCTTCAGCCGCCACCGGTCTCCATCCCGTCCTCAGCCGCCGCCGGTCTCCATCCCGCTTCAGCCGCCGCCACCGCTCTCCTTCCCGCTCTCCATCCCAGCCAGTCGCCGGCGCTCGCCATCTCTCCTTCCTCGCTTCGGATTCACCGGTTGCGGGAGAGGGCAAGGTCGAGGGCAACAGCCCGGACACCAAGAAGCAGGAGAGGCACAGGCGTGTGGGGTTGGCAAAAGTAAAGCTGAAGGAGTTGATATTACTCAAGTGATAAAATCAGTTCGAGAATGGCGGATGAAATTAAAAGGAGGAGAGAAGAGGACGATGATATGATGCTTTTTGTTTTTCCTGCGATGTATATGCTGTGCGGTATGACAAATAGTGAGAAAATACCTAGACATATCTCAAGACTATCCGGTAAAGAGCGGCTTCAAGAAATCCTTGAAGGACATGTAATGGATTGTAAAGTTGCATTCCGCATGGAGCCTCATGTTTTCAAGACAATAGCGAATTATCTTAGAGAGGAAAAGTTGTTAAAGGATAGTAGAGGCTTGAGGATTGAGGAGAAGCTTGGGATATTTATGTTCATGCTCGCTCACAATGCAAGCTTTCAAGATCTACAGTATGAATTCAAGCATAGTGGGTCTACACTTCATCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACCAAACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCAAAATGTGATAGTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGGGTCTGCAACCGATGCTAGGGTCCTTAGATCAGCAATGAATAGTGGCTTTCAAGTCCCAAATGGTAAATTTTTTCTAGTAGATGGTGGTTATGCCAACACACCATAGTTCATTACTCCTTATCGTGGTGTTCGGTACCATCTAAAGGAGTTTGGACGTGGTCATCGTAGACCTAGAGACTACAAGGAGTTATTCAATCATCGCCATGCCATTCTGAGAAACCATGTAGAGAGAGCTCTAGGGGTTCTAAAGAAGCGATTTCCCATCCTGAAAGTAGGCACTTTCCATCGGATAAAGAACCAAGTGCGGATTCCAGCAGCTGCTGCGGTGTTCCACAACATGATCCGGTTGCTTAATGGTGATGAGGGCTGGTTGGACAACCAACCTGATAATATAGAACCTACTAATTTTGTCGATCTACCAGAAGGTGACAGTGAATACCGAAATGATGTGCCATCTCTTAGCAATCAAATGATCAGTGGGAATAATATTAGAGATATGATTGCTAAGAAGATGTGGGAAGATTATGTTCGTAACTAGCAAGAATAGTATAGATAATATTTTGGTTTTGCATTATTTGTATTTATTTATGCAATCAACATTTATGATATGGACA]
consensusID : consensus_8252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 538 fasta sequence
[CAAGCCATAGTGGTTCTACACTT-CA-TCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACC-AACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCCAAATGTGATGGTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGAACCATTTTTCC-TAACTGCTTCTT-AATTCATGTAGCTGTGATGGTTGCAGGAACCATTTTTTTCTACAGGATT-AACACTTGCTTGATCAGACATAGATATATTATTTAGTTTGATCGGATAGAGATATATTACGTTCAAAGAACCTATTTTGTAGCTTGCTTTGCAC-ATGGC-ATTGGATGTTTACTGCTTGTAGAATTTAAACTATCCCAAATTATAATTTTTAAAAAAAAAA]
[+] EMBL BM420836 [CAAGCCATAGTGGTTCTACACTT CA TCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACC AACGCATTGGAAGATTAGAACCAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCCAAATGTGAT GTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGT GTTGGGAGGAACCATTTTTCC TAACTGCTTCTTGAATTCATGTAGCTGTGATGGTTGCAGGAACCATTTTTTTCTACAGGATTGAACACTTGCTTGATCAGACATAGATATATTATTTAGTTTGATCGGATAGAGATATATTACGTTCAAAGAACCTATTTTGTAGCTTGCTTTGCAC AT GC ATNGGATGTTTACTGCTTGTAGAATTTAAA ]
[+] EMBL BM038239 [ gTCTACACTTGCACTC GCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCAT CCGACCAAACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAA GCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAG CCAAATGTGATGGTTGCTTGTGATNTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGAACCATTTTTCCATAACTGCTTCTT NATTCANCNAGCTGTGATGGTTGCAGGAACCATTTTTTTCTACAGGATT AACACTTGCTTGATCAGACATAGATATATTATTTAGTTTGATCGGATAGAGATATATTACGTTCAAAGAACCTATTTTGTAGCTTGCTTTGCACAATGCCNCCCGGNTGTTTACTGCTTGTAGAATTTAAAaa ]
[+] EMBL BI812915 [ CTACACTT CA TCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACC AACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAA GCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCCAAATGTGATGGTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGAACCATTTTTCC TAACTGCTTCTT AATTCATGTAGCTGTGATGGTTGCAGGAACCATTTTTTTCTACAGGATT AACACTTGCTTGATCAGACATAGATATATTATTTAGTTTGATCGGATAGAGATATATTACGTTCAAAGAACCTATTTTGTAGCTTGCTTTGCAC ATGGC ATTGGATGTTTACTGCTTGTAGAATTTAATCTATCCCAAATTATAATTTTTAAAAAAAAAA]
[+] EMBL BI813743 [ CTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACC AACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCCAAATGTGATGGTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGAACCATTTTTCC TAACTGCTTCTT AATTCATGTAGCTGTGATGGTTGCAGGAACCATTTTTTTCTACAGGATT AACACTTGCTTGATCAGACATAGATATATTATTTAGTTTGATCGGATAGAGATATATTACGTTC AAGAACCTATTTTGTAGCTTGCTTTGCAC ATGGC ATTGGATGTTTACTGCTTGTAGAATTTAATCTAT CCAAATTATAATTTTTAATAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_8252#0 CTAGGGTTTGGAGGCGGCGTGAGGTCCGGGAGGCGACGCGAGGTCCGGGAGGCGGCTCTA 60
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 GGGTGGAGATCCAGGAGCAGCATATCTCCAGCCGCTGCCGCTCTCCATCCCGCCCTCGGT 120
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 CGCCGACGATCTCCATCCAGCTTCAGCCGCCACCGGTCTCCATCCCGTCCTCAGCCGCCG 180
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 CCGGTCTCCATCCCGCTTCAGCCGCCGCCACCGCTCTCCTTCCCGCTCTCCATCCCAGCC 240
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 AGTCGCCGGCGCTCGCCATCTCTCCTTCCTCGCTTCGGATTCACCGGTTGCGGGAGAGGG 300
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 CAAGGTCGAGGGCAACAGCCCGGACACCAAGAAGCAGGAGAGGCACAGGCGTGTGGGGTT 360
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 GGCAAAAGTAAAGCTGAAGGAGTTGATATTACTCAAGTGATAAAATCAGTTCGAGAATGG 420
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 CGGATGAAATTAAAAGGAGGAGAGAAGAGGACGATGATATGATGCTTTTTGTTTTTCCTG 480
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 CGATGTATATGCTGTGCGGTATGACAAATAGTGAGAAAATACCTAGACATATCTCAAGAC 540
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 TATCCGGTAAAGAGCGGCTTCAAGAAATCCTTGAAGGACATGTAATGGATTGTAAAGTTG 600
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 CATTCCGCATGGAGCCTCATGTTTTCAAGACAATAGCGAATTATCTTAGAGAGGAAAAGT 660
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 TGTTAAAGGATAGTAGAGGCTTGAGGATTGAGGAGAAGCTTGGGATATTTATGTTCATGC 720
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 TCGCTCACAATGCAAGCTTTCAAGATCTACAGTATGAATTCAAGC-ATAGTGGGTCTACA 779
consensus_8252#1 ----------------------------------------CAAGCCATAGTGGTTCTACA 20
***** ******* ******
consensus_8252#0 CTTCATCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTC 839
consensus_8252#1 CTTCATCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTC 80
************************************************************
consensus_8252#0 AAGCTTCCTCATGCCGACCAAACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCT 899
consensus_8252#1 AAGCTTCCTCATGCCGACCAA-CGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCT 139
********************* **************************************
consensus_8252#0 TACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGA 959
consensus_8252#1 TACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGA 199
************************************************************
consensus_8252#0 GAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCAAAATGTGATAGTTGCT 1019
consensus_8252#1 GAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCCAAATGTGATGGTTGCT 259
******************************************* ********* ******
consensus_8252#0 TGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGGGTCTGCAACCGAT 1079
consensus_8252#1 TGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGAACCATTTTTCCTA 319
********************************************** * *
consensus_8252#0 GCTAGGGTCCTTAGATCAGCAATGAATAGTGGCTTTCAAGTCCCAAATGGTAAATTTTTT 1139
consensus_8252#1 ACT--GCTTCTTAATTCAT---------GTAGCTGTGATGGTTGCAGGAACCATTTTTTT 368
** * * **** *** ** *** * * * * * ******
consensus_8252#0 CTAGTAGATGGTGGTTATGCCAACACACCATAGTTCATTACTCCTTATCGTGGTGTTCGG 1199
consensus_8252#1 CTACAGGATTAACACTTGCTTGATCAGACATAGATA--TATTATTTAGTTTGAT---CGG 423
*** *** * * ***** * ** * *** ** * ***
consensus_8252#0 TACCATCTAAAGGAGTTTGGACGTGGTCATCGTAGACCTAGAGAC-TACAAGGAGTTATT 1258
consensus_8252#1 ATAGAGATATATTACGTTCAAAGAACCTATTTTGTAGCTTGCTTTGCACATGGCATTGGA 483
* ** * * ** * * ** * * ** * *** ** **
consensus_8252#0 CAATCATCGCCATGCCATTCTGAGAAACCATGTAGAGAGAGCTCTAGGGGTTCTAAAGAA 1318
consensus_8252#1 TGTTTACTGCTTGTAGAATTT---AAACTATCCCAAA------TTATAATTTTTAAAAAA 534
* * ** * * * **** ** * ** ** **** **
consensus_8252#0 GCGATTTCCCATCCTGAAAGTAGGCACTTTCCATCGGATAAAGAACCAAGTGCGGATTCC 1378
consensus_8252#1 AAAA-------------------------------------------------------- 538
*
consensus_8252#0 AGCAGCTGCTGCGGTGTTCCACAACATGATCCGGTTGCTTAATGGTGATGAGGGCTGGTT 1438
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 GGACAACCAACCTGATAATATAGAACCTACTAATTTTGTCGATCTACCAGAAGGTGACAG 1498
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 TGAATACCGAAATGATGTGCCATCTCTTAGCAATCAAATGATCAGTGGGAATAATATTAG 1558
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 AGATATGATTGCTAAGAAGATGTGGGAAGATTATGTTCGTAACTAGCAAGAATAGTATAG 1618
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 ATAATATTTTGGTTTTGCATTATTTGTATTTATTTATGCAATCAACATTTATGATATGGA 1678
consensus_8252#1 ------------------------------------------------------------
consensus_8252#0 CA 1680
consensus_8252#1 --
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||