These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1680 fasta sequence [CTAGGGTTTGGAGGCGGCGTGAGGTCCGGGAGGCGACGCGAGGTCCGGGAGGCGGCTCTAGGGTGGAGATCCAGGAGCAGCATATCTCCAGCCGCTGCCGCTCTCCATCCCGCCCTCGGTCGCCGACGATCTCCATCCAGCTTCAGCCGCCACCGGTCTCCATCCCGTCCTCAGCCGCCGCCGGTCTCCATCCCGCTTCAGCCGCCGCCACCGCTCTCCTTCCCGCTCTCCATCCCAGCCAGTCGCCGGCGCTCGCCATCTCTCCTTCCTCGCTTCGGATTCACCGGTTGCGGGAGAGGGCAAGGTCGAGGGCAACAGCCCGGACACCAAGAAGCAGGAGAGGCACAGGCGTGTGGGGTTGGCAAAAGTAAAGCTGAAGGAGTTGATATTACTCAAGTGATAAAATCAGTTCGAGAATGGCGGATGAAATTAAAAGGAGGAGAGAAGAGGACGATGATATGATGCTTTTTGTTTTTCCTGCGATGTATATGCTGTGCGGTATGACAAATAGTGAGAAAATACCTAGACATATCTCAAGACTATCCGGTAAAGAGCGGCTTCAAGAAATCCTTGAAGGACATGTAATGGATTGTAAAGTTGCATTCCGCATGGAGCCTCATGTTTTCAAGACAATAGCGAATTATCTTAGAGAGGAAAAGTTGTTAAAGGATAGTAGAGGCTTGAGGATTGAGGAGAAGCTTGGGATATTTATGTTCATGCTCGCTCACAATGCAAGCTTTCAAGATCTACAGTATGAATTCAAGCATAGTGGGTCTACACTTCATCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACCAAACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCAAAATGTGATAGTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGGGTCTGCAACCGATGCTAGGGTCCTTAGATCAGCAATGAATAGTGGCTTTCAAGTCCCAAATGGTAAATTTTTTCTAGTAGATGGTGGTTATGCCAACACACCATAGTTCATTACTCCTTATCGTGGTGTTCGGTACCATCTAAAGGAGTTTGGACGTGGTCATCGTAGACCTAGAGACTACAAGGAGTTATTCAATCATCGCCATGCCATTCTGAGAAACCATGTAGAGAGAGCTCTAGGGGTTCTAAAGAAGCGATTTCCCATCCTGAAAGTAGGCACTTTCCATCGGATAAAGAACCAAGTGCGGATTCCAGCAGCTGCTGCGGTGTTCCACAACATGATCCGGTTGCTTAATGGTGATGAGGGCTGGTTGGACAACCAACCTGATAATATAGAACCTACTAATTTTGTCGATCTACCAGAAGGTGACAGTGAATACCGAAATGATGTGCCATCTCTTAGCAATCAAATGATCAGTGGGAATAATATTAGAGATATGATTGCTAAGAAGATGTGGGAAGATTATGTTCGTAACTAGCAAGAATAGTATAGATAATATTTTGGTTTTGCATTATTTGTATTTATTTATGCAATCAACATTTATGATATGGACA] [+] EMBL AK111398 [CTAGGGTTTGGAGGCGGCGTGAGGTCCGGGAGGCGACGCGAGGTCCGGGAGGCGGCTCTAGGGTGGAGATCCAGGAGCAGCATATCTCCAGCCGCTGCCGCTCTCCATCCCGCCCTCGGTCGCCGACGATCTCCATCCAGCTTCAGCCGCCACCGGTCTCCATCCCGTCCTCAGCCGCCGCCGGTCTCCATCCCGCTTCAGCCGCCGCCACCGCTCTCCTTCCCGCTCTCCATCCCAGCCAGTCGCCGGCGCTCGCCATCTCTCCTTCCTCGCTTCGGATTCACCGGTTGCGGGAGAGGGCAAGGTCGAGGGCAACAGCCCGGACACCAAGAAGCAGGAGAGGCACAGGCGTGTGGGGTTGGCAAAAGTAAAGCTGAAGGAGTTGATATTACTCAAGTGATAAAATCAGTTCGAGAATGGCGGATGAAATTAAAAGGAGGAGAGAAGAGGACGATGATATGATGCTTTTTGTTTTTCCTGCGATGTATATGCTGTGCGGTATGACAAATAGTGAGAAAATACCTAGACATATCTCAAGACTATCCGGTAAAGAGCGGCTTCAAGAAATCCTTGAAGGACATGTAATGGATTGTAAAGTTGCATTCCGCATGGAGCCTCATGTTTTCAAGACAATAGCGAATTATCTTAGAGAGGAAAAGTTGTTAAAGGATAGTAGAGGCTTGAGGATTGAGGAGAAGCTTGGGATATTTATGTTCATGCTCGCTCACAATGCAAGCTTTCAAGATCTACAGTATGAATTCAAGCATAGTGGGTCTACACTTCATCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACCAAACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCAAAATGTGATAGTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGGGTCTGCAACCGATGCTAGGGTCCTTAGATCAGCAATGAATAGTGGCTTTCAAGTCCCAAATGGTAAATTTTTTCTAGTAGATGGTGGTTATGCCAACACACCATAGTTCATTACTCCTTATCGTGGTGTTCGGTACCATCTAAAGGAGTTTGGACGTGGTCATCGTAGACCTAGAGACTACAAGGAGTTATTCAATCATCGCCATGCCATTCTGAGAAACCATGTAGAGAGAGCTCTAGGGGTTCTAAAGAAGCGATTTCCCATCCTGAAAGTAGGCACTTTCCATCGGATAAAGAACCAAGTGCGGATTCCAGCAGCTGCTGCGGTGTTCCACAACATGATCCGGTTGCTTAATGGTGATGAGGGCTGGTTGGACAACCAACCTGATAATATAGAACCTACTAATTTTGTCGATCTACCAGAAGGTGACAGTGAATACCGAAATGATGTGCCATCTCTTAGCAATCAAATGATCAGTGGGAATAATATTAGAGATATGATTGCTAAGAAGATGTGGGAAGATTATGTTCGTAACTAGCAAGAATAGTATAGATAATATTTTGGTTTTGCATTATTTGTATTTATTTATGCAATCAACATTTATGATATGGACA] consensusID : consensus_8252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 538 fasta sequence [CAAGCCATAGTGGTTCTACACTT-CA-TCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACC-AACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCCAAATGTGATGGTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGAACCATTTTTCC-TAACTGCTTCTT-AATTCATGTAGCTGTGATGGTTGCAGGAACCATTTTTTTCTACAGGATT-AACACTTGCTTGATCAGACATAGATATATTATTTAGTTTGATCGGATAGAGATATATTACGTTCAAAGAACCTATTTTGTAGCTTGCTTTGCAC-ATGGC-ATTGGATGTTTACTGCTTGTAGAATTTAAACTATCCCAAATTATAATTTTTAAAAAAAAAA] [+] EMBL BM420836 [CAAGCCATAGTGGTTCTACACTT CA TCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACC AACGCATTGGAAGATTAGAACCAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCCAAATGTGAT GTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGT GTTGGGAGGAACCATTTTTCC TAACTGCTTCTTGAATTCATGTAGCTGTGATGGTTGCAGGAACCATTTTTTTCTACAGGATTGAACACTTGCTTGATCAGACATAGATATATTATTTAGTTTGATCGGATAGAGATATATTACGTTCAAAGAACCTATTTTGTAGCTTGCTTTGCAC AT GC ATNGGATGTTTACTGCTTGTAGAATTTAAA ] [+] EMBL BM038239 [ gTCTACACTTGCACTC GCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCAT CCGACCAAACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAA GCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAG CCAAATGTGATGGTTGCTTGTGATNTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGAACCATTTTTCCATAACTGCTTCTT NATTCANCNAGCTGTGATGGTTGCAGGAACCATTTTTTTCTACAGGATT AACACTTGCTTGATCAGACATAGATATATTATTTAGTTTGATCGGATAGAGATATATTACGTTCAAAGAACCTATTTTGTAGCTTGCTTTGCACAATGCCNCCCGGNTGTTTACTGCTTGTAGAATTTAAAaa ] [+] EMBL BI812915 [ CTACACTT CA TCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACC AACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAA GCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCCAAATGTGATGGTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGAACCATTTTTCC TAACTGCTTCTT AATTCATGTAGCTGTGATGGTTGCAGGAACCATTTTTTTCTACAGGATT AACACTTGCTTGATCAGACATAGATATATTATTTAGTTTGATCGGATAGAGATATATTACGTTCAAAGAACCTATTTTGTAGCTTGCTTTGCAC ATGGC ATTGGATGTTTACTGCTTGTAGAATTTAATCTATCCCAAATTATAATTTTTAAAAAAAAAA] [+] EMBL BI813743 [ CTCACCTATAGATTTCTCAAGCTTCCTCATGCCGACC AACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCTTACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGAGAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCCAAATGTGATGGTTGCTTGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGAACCATTTTTCC TAACTGCTTCTT AATTCATGTAGCTGTGATGGTTGCAGGAACCATTTTTTTCTACAGGATT AACACTTGCTTGATCAGACATAGATATATTATTTAGTTTGATCGGATAGAGATATATTACGTTC AAGAACCTATTTTGTAGCTTGCTTTGCAC ATGGC ATTGGATGTTTACTGCTTGTAGAATTTAATCTAT CCAAATTATAATTTTTAATAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8252#0 CTAGGGTTTGGAGGCGGCGTGAGGTCCGGGAGGCGACGCGAGGTCCGGGAGGCGGCTCTA 60 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 GGGTGGAGATCCAGGAGCAGCATATCTCCAGCCGCTGCCGCTCTCCATCCCGCCCTCGGT 120 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 CGCCGACGATCTCCATCCAGCTTCAGCCGCCACCGGTCTCCATCCCGTCCTCAGCCGCCG 180 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 CCGGTCTCCATCCCGCTTCAGCCGCCGCCACCGCTCTCCTTCCCGCTCTCCATCCCAGCC 240 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 AGTCGCCGGCGCTCGCCATCTCTCCTTCCTCGCTTCGGATTCACCGGTTGCGGGAGAGGG 300 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 CAAGGTCGAGGGCAACAGCCCGGACACCAAGAAGCAGGAGAGGCACAGGCGTGTGGGGTT 360 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 GGCAAAAGTAAAGCTGAAGGAGTTGATATTACTCAAGTGATAAAATCAGTTCGAGAATGG 420 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 CGGATGAAATTAAAAGGAGGAGAGAAGAGGACGATGATATGATGCTTTTTGTTTTTCCTG 480 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 CGATGTATATGCTGTGCGGTATGACAAATAGTGAGAAAATACCTAGACATATCTCAAGAC 540 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 TATCCGGTAAAGAGCGGCTTCAAGAAATCCTTGAAGGACATGTAATGGATTGTAAAGTTG 600 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 CATTCCGCATGGAGCCTCATGTTTTCAAGACAATAGCGAATTATCTTAGAGAGGAAAAGT 660 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 TGTTAAAGGATAGTAGAGGCTTGAGGATTGAGGAGAAGCTTGGGATATTTATGTTCATGC 720 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 TCGCTCACAATGCAAGCTTTCAAGATCTACAGTATGAATTCAAGC-ATAGTGGGTCTACA 779 consensus_8252#1 ----------------------------------------CAAGCCATAGTGGTTCTACA 20 ***** ******* ****** consensus_8252#0 CTTCATCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTC 839 consensus_8252#1 CTTCATCGGCATATTAAGTCTATTTTCAAGATAATCCCAGCTCTCACCTATAGATTTCTC 80 ************************************************************ consensus_8252#0 AAGCTTCCTCATGCCGACCAAACGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCT 899 consensus_8252#1 AAGCTTCCTCATGCCGACCAA-CGCATTGGAAGATTAGAACAAATCCTCGCTTCTTTCCT 139 ********************* ************************************** consensus_8252#0 TACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGA 959 consensus_8252#1 TACTTCAAGAATTGCATAGGGGCTATTGATGGCACTCACATTCCTATAACTATAGATGGA 199 ************************************************************ consensus_8252#0 GAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCAAAATGTGATAGTTGCT 1019 consensus_8252#1 GAGAAGGCAGCTCCTTATAGGAACAGAAAAGGGACTTTGAGCCCAAATGTGATGGTTGCT 259 ******************************************* ********* ****** consensus_8252#0 TGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGGGTCTGCAACCGAT 1079 consensus_8252#1 TGTGATTTCGACCTAAATTTCACTTTTATCTCATGTGGTTGGGAGGAACCATTTTTCCTA 319 ********************************************** * * consensus_8252#0 GCTAGGGTCCTTAGATCAGCAATGAATAGTGGCTTTCAAGTCCCAAATGGTAAATTTTTT 1139 consensus_8252#1 ACT--GCTTCTTAATTCAT---------GTAGCTGTGATGGTTGCAGGAACCATTTTTTT 368 ** * * **** *** ** *** * * * * * ****** consensus_8252#0 CTAGTAGATGGTGGTTATGCCAACACACCATAGTTCATTACTCCTTATCGTGGTGTTCGG 1199 consensus_8252#1 CTACAGGATTAACACTTGCTTGATCAGACATAGATA--TATTATTTAGTTTGAT---CGG 423 *** *** * * ***** * ** * *** ** * *** consensus_8252#0 TACCATCTAAAGGAGTTTGGACGTGGTCATCGTAGACCTAGAGAC-TACAAGGAGTTATT 1258 consensus_8252#1 ATAGAGATATATTACGTTCAAAGAACCTATTTTGTAGCTTGCTTTGCACATGGCATTGGA 483 * ** * * ** * * ** * * ** * *** ** ** consensus_8252#0 CAATCATCGCCATGCCATTCTGAGAAACCATGTAGAGAGAGCTCTAGGGGTTCTAAAGAA 1318 consensus_8252#1 TGTTTACTGCTTGTAGAATTT---AAACTATCCCAAA------TTATAATTTTTAAAAAA 534 * * ** * * * **** ** * ** ** **** ** consensus_8252#0 GCGATTTCCCATCCTGAAAGTAGGCACTTTCCATCGGATAAAGAACCAAGTGCGGATTCC 1378 consensus_8252#1 AAAA-------------------------------------------------------- 538 * consensus_8252#0 AGCAGCTGCTGCGGTGTTCCACAACATGATCCGGTTGCTTAATGGTGATGAGGGCTGGTT 1438 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 GGACAACCAACCTGATAATATAGAACCTACTAATTTTGTCGATCTACCAGAAGGTGACAG 1498 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 TGAATACCGAAATGATGTGCCATCTCTTAGCAATCAAATGATCAGTGGGAATAATATTAG 1558 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 AGATATGATTGCTAAGAAGATGTGGGAAGATTATGTTCGTAACTAGCAAGAATAGTATAG 1618 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 ATAATATTTTGGTTTTGCATTATTTGTATTTATTTATGCAATCAACATTTATGATATGGA 1678 consensus_8252#1 ------------------------------------------------------------ consensus_8252#0 CA 1680 consensus_8252#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||