These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_8258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 825 fasta sequence [CCNCCCACGCGTCCGCGGACGTNTTTTATCCACGAGGCGACGACGNCGACGATGAGCGCGNCGGCGGCGGCGGACGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGGCGAGCGTGNTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATNCGCGNTGAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCGAGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCTGCGGCATCACCTCCTTCTACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGGCACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACTGGGAGAAGTGGTTCTCCAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCCGCCGCCGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATGCAACACGCGTTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCCTGTGGGAGCAAGGGCGCATTATAAAAGTGCCAGGTCACGTCCCTAGCTTTTGAAGGATCTTCAGGAAGCCATGGATACCGAGCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCAACTTTTAAACTTGGTGTTTGTGGTTGTGGAAGCCGTTGTCCAAATGCTAAATTGCCAAGTTGGAAGCCATATGCTTACAAATGATTGCCCATGGTTAAAACTAAAAAA] [+] EMBL OSS0750A [CCNCCCACGCGTCCGCGGACGTNTTTTATCCACGAGGCGACGACGNCGACGATGAGCGCGNCGGCGGCGGCGGACGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGGCGAGCGTGNTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATNCGCGNTGAACGCCCACTTCGTCGTCCCGGCCTCCAAG ] [+] EMBL AK108004 [ CGAGGCGACGACGGCGACGATGAGCGCGGCGGCGGCGGCGGACGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGGCGAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCGCG GGAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCGAGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCTGCGGCATCACCTCCTTCTACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGGCACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACTGGGAGAAGTGGTTCTCCAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCCGCCGCCGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATGCAACACGCGTTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCCTGTGGGAGCAAGGGCGCATTATAAAAGTGCCAGGTCACGTCCCTAGCTTTTGAAGGATCTTCAGGAAGCCATGGATACCGAGCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCAACTTTTAAACTTGGTGTTTGTGGTTGTGGAAGCCGTTGTCCAAATGCTAAATTGCCAAGTTGGAAGCCATAT ] [+] EMBL BI802702 [ GCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGGCACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACTGGGAGAAGTGGTTCTCCAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCC CCGCCGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATGCAACACGCGTTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCCTGTGGGAGCAAGGGCGCATTATAAAAGTGCCAGGTCACGTCCCTAGCTTTTGAAGGATCTTCAGGAAGCCATGGATACCGAGCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCAACTTTTAAACTTGGTGTTTGTGGTTGTGGAAGCCGTTGTCC AATGCTAAATTGCCAAGTTGGAAGCCATATGCTTACAAATGATTGCCCATGGTTAAAACTAAAAAA] consensusID : consensus_8258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 769 fasta sequence [TTTCTTTTCCTCTTTCCACGAGGCGACGACGGCGACGATGAGCGCGGCGGCGGCGGCGGACGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGGCGAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCGCGGGAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCGAGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCTGCGGCATCACCTCCTTCTACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGGCACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACTGGGAGAAGTGGTTCTCCAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCCGCCGCCGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGGTAAGTTCCTCTCCCCCCCTTTCTGTTGTATTGTGAGCTTCTTTAGTATCAAAAATTATGTGATAATAAATGAAACACCAATCGATATGGAGATATGTGCAATATGTGTTAATTAACTACATATCTGTGTTGCAATTGGTGATTTGGATGTTTAATTTGCTGCTTTCTCATGTTCAATTCGACTGTCTTAAAATGAAATTGAGACTAGAAGAAGGATATGAGGATATGCTTTCGTGTGGTGTATATCCAATGTGTAC] [+] EMBL AK111009 [TTTCTTTTCCTCTTTCCACGAGGCGACGACGGCGACGATGAGCGCGGCGGCGGCGGCGGACGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGGCGAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCGCGGGAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCGAGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCTGCGGCATCACCTCCTTCTACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGGCACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACTGGGAGAAGTGGTTCTCCAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCCGCCGCCGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGGTAAGTTCCTCTCCCCCCCTTTCTGTTGTATTGTGAGCTTCTTTAGTATCAAAAATTATGTGATAATAAATGAAACACCAATCGATATGGAGATATGTGCAATATGTGTTAATTAACTACATATCTGTGTTGCAATTGGTGATTTGGATGTTTAATTTGCTGCTTTCTCATGTTCAATTCGACTGTCTTAAAATGAAATTGAGACTAGAAGAAGGATATGAGGATATGCTTTCGTGTGGTGTATATCCAATGTGTAC] consensusID : consensus_8258#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence [ACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGGCACCCTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGGCGAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCGCGGGAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCGAGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCTGCGGCATCACCTCCTTCTACACCCCGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATGCAACACGCGTTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCCTGTGGGAGCAAGGGCGCATTATAAAAGTGCCAGGTCACGTCCCTAGCTTTTGAAGGATCTTCAGGAAGCCATGGATACCGAGCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCAACTTTTAACTTGGTGTTTGTGGGTGTGGAACCCGTTGTCCAAATGCTAAATTGCCAGTTGTGAG] [+] EMBL CA753909 [ACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGGCACCCTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGGCGAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCGCGGGAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCGAGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCTGCGGCATCACCTCCTTCTACACCCCGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATGCAACACGCGTTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCCTGTGGGAGCAAGGGCGCATTATAAAAGTGCCAGGTCACGTCCCTAGCTTTTGAAGGATCTTCAGGAAGCCATGGATACCGAGCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCAACTTTTAACTTGGTGTTTGTGGGTGTGGAACCCGTTGTCCAAATGCTAAATTGCCAGTTGTGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_8258#0 CCNCCCACGCGTCCGCGGACGTNTTTTATCCACGA-GGCGACGACGNCGACGATGAGCGC 59 consensus_8258#2 --------ACACCC-----CGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGC 47 consensus_8258#1 ---------TTTCT-----TTTCCTCTTTCCACGA-GGCGACGACGGCGACGATGAGCGC 45 * * ** *** **** ** ** * ** * ** consensus_8258#0 GNCGGCGGCGGCGGACGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCG 119 consensus_8258#2 GTCGACC-CGGGCACCCTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCG 106 consensus_8258#1 GGCGGCGGCGGCGGACGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCG 105 * ** * *** * ******************************************* consensus_8258#0 GGCGGAGGCGCCGGCGAGCGTGNTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATNCG 179 consensus_8258#2 GGCGGAGGCGCCGGCGAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCG 166 consensus_8258#1 GGCGGAGGCGCCGGCGAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCG 165 ********************** ********************************** ** consensus_8258#0 CGNTGAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCG 239 consensus_8258#2 CGG-GAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCG 225 consensus_8258#1 CGG-GAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCG 224 ** ******************************************************** consensus_8258#0 AGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCT 299 consensus_8258#2 AGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCT 285 consensus_8258#1 AGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCT 284 ************************************************************ consensus_8258#0 GCGGCATCACCTCCTTCTACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCG 359 consensus_8258#2 GCGGCATCACCTCCTTCTACACCCCGC--------------------------------- 312 consensus_8258#1 GCGGCATCACCTCCTTCTACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCG 344 *************************** consensus_8258#0 CCTGCGTCGACCCGGGCACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACT 419 consensus_8258#2 ------------------------------------------------------------ consensus_8258#1 CCTGCGTCGACCCGGGCACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACT 404 consensus_8258#0 GGGAGAAGTGGTTCTCCAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCCGCCGC 479 consensus_8258#2 ------------------------------------------------------------ consensus_8258#1 GGGAGAAGTGGTTCTCCAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCCGCCGC 464 consensus_8258#0 CGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATGCAACACGCG 539 consensus_8258#2 ---CGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATGCAACACGCG 369 consensus_8258#1 CGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGG--GTAAGTTCCT 522 ********************************************* * ** * consensus_8258#0 TTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCCTGTG 599 consensus_8258#2 TTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCCTGTG 429 consensus_8258#1 CTCCCCCCCTTTCTGTTGTATTGTGAGCTTCTTTAGTATCAAAAATTATGTGATAATAAA 582 * ****** * * * *** * * * * *** * * * consensus_8258#0 GGAGCAAGGGCGCATTATAAAAGTGCCAG-GTCACGTCCCTAGCTTTTGAAGGATCTTCA 658 consensus_8258#2 GGAGCAAGGGCGCATTATAAAAGTGCCAG-GTCACGTCCCTAGCTTTTGAAGGATCTTCA 488 consensus_8258#1 TGAAACACCAATCGATATGGAGATATGTGCAATATGTGTTAATTAACTACATATCTGTGT 642 ** * * *** * * * * ** * * * * consensus_8258#0 GGAAGCCATGGATACCGA-GCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCA 717 consensus_8258#2 GGAAGCCATGGATACCGA-GCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCA 547 consensus_8258#1 TGCAATTGGTGATTTGGATGTTTAATTTGCTGCTTTCTCA-TGTTCAATTCGACTGTCTT 701 * * *** ** * * * ** * * * * ** ** * * ** * consensus_8258#0 ACTTTTAAACTTGGTGTTTGT----GGTTGTGGAAGCCGTTGTCCAAATGCTAAATTGCC 773 consensus_8258#2 ACTTTTAA-CTTGGTGTTTGT----GGGTGTGGAACCCGTTGTCCAAATGCTAAATTGCC 602 consensus_8258#1 AAAATGAA-ATTGAGACTAGAAGAAGGATATGAGGATATGCTTTCGTGTGGTGTATATCC 760 * * ** *** * * ** * ** * * ** * ** ** consensus_8258#0 AAGTTGGAAGCCATATGCTTACAAATGATTGCCCATGGTTAAAACTAAAAAA 825 consensus_8258#2 A-GTTGTGAG------------------------------------------ 611 consensus_8258#1 AATGTGTAC------------------------------------------- 769 * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||