cluster # 8258

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Oryza sativa
cluster # 8258 cluster # 8258 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8258#0 length = 825 sequences # 3

consensus_8258#1 length = 769 sequences # 1
consensus_8258#2 length = 611 sequences # 1

consensusID : consensus_8258#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 825
fasta sequence

                              [CCNCCCACGCGTCCGCGGACGTNTTTTATCCACGAGGCGACGACGNCGACGATGAGCGCGNCGGCGGCGGCGGACGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGGCGAGCGTGNTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATNCGCGNTGAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCGAGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCTGCGGCATCACCTCCTTCTACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGGCACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACTGGGAGAAGTGGTTCTCCAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCCGCCGCCGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATGCAACACGCGTTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCCTGTGGGAGCAAGGGCGCATTATAAAAGTGCCAGGTCACGTCCCTAGCTTTTGAAGGATCTTCAGGAAGCCATGGATACCGAGCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCAACTTTTAAACTTGGTGTTTGTGGTTGTGGAAGCCGTTGTCCAAATGCTAAATTGCCAAGTTGGAAGCCATATGCTTACAAATGATTGCCCATGGTTAAAACTAAAAAA]

[+] EMBL OSS0750A             [CCNCCCACGCGTCCGCGGACGTNTTTTATCCACGAGGCGACGACGNCGACGATGAGCGCGNCGGCGGCGGCGGACGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGGCGAGCGTGNTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATNCGCGNTGAACGCCCACTTCGTCGTCCCGGCCTCCAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK108004             [                                CGAGGCGACGACGGCGACGATGAGCGCGGCGGCGGCGGCGGACGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGGCGAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCGCG GGAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCGAGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCTGCGGCATCACCTCCTTCTACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGGCACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACTGGGAGAAGTGGTTCTCCAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCCGCCGCCGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATGCAACACGCGTTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCCTGTGGGAGCAAGGGCGCATTATAAAAGTGCCAGGTCACGTCCCTAGCTTTTGAAGGATCTTCAGGAAGCCATGGATACCGAGCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCAACTTTTAAACTTGGTGTTTGTGGTTGTGGAAGCCGTTGTCCAAATGCTAAATTGCCAAGTTGGAAGCCATAT                                    ]
[+] EMBL BI802702             [                                                                                                                                                                                                                                                                                                                                                     GCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGGCACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACTGGGAGAAGTGGTTCTCCAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCC CCGCCGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATGCAACACGCGTTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCCTGTGGGAGCAAGGGCGCATTATAAAAGTGCCAGGTCACGTCCCTAGCTTTTGAAGGATCTTCAGGAAGCCATGGATACCGAGCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCAACTTTTAAACTTGGTGTTTGTGGTTGTGGAAGCCGTTGTCC AATGCTAAATTGCCAAGTTGGAAGCCATATGCTTACAAATGATTGCCCATGGTTAAAACTAAAAAA]




>consensus_8258#0
CCNCCCACGCGTCCGCGGACGTNTTTTATCCACGAGGCGACGACGNCGACGATGAGCGCG
NCGGCGGCGGCGGACGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGG
GCGGAGGCGCCGGCGAGCGTGNTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATNCGC
GNTGAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCGA
GTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCTG
CGGCATCACCTCCTTCTACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGC
CTGCGTCGACCCGGGCACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACTG
GGAGAAGTGGTTCTCCAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCCGCCGCC
GCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATGCAACACGCGT
TGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCCTGTGG
GAGCAAGGGCGCATTATAAAAGTGCCAGGTCACGTCCCTAGCTTTTGAAGGATCTTCAGG
AAGCCATGGATACCGAGCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCAACT
TTTAAACTTGGTGTTTGTGGTTGTGGAAGCCGTTGTCCAAATGCTAAATTGCCAAGTTGG
AAGCCATATGCTTACAAATGATTGCCCATGGTTAAAACTAAAAAA

consensusID : consensus_8258#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 769
fasta sequence

                              [TTTCTTTTCCTCTTTCCACGAGGCGACGACGGCGACGATGAGCGCGGCGGCGGCGGCGGACGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGGCGAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCGCGGGAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCGAGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCTGCGGCATCACCTCCTTCTACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGGCACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACTGGGAGAAGTGGTTCTCCAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCCGCCGCCGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGGTAAGTTCCTCTCCCCCCCTTTCTGTTGTATTGTGAGCTTCTTTAGTATCAAAAATTATGTGATAATAAATGAAACACCAATCGATATGGAGATATGTGCAATATGTGTTAATTAACTACATATCTGTGTTGCAATTGGTGATTTGGATGTTTAATTTGCTGCTTTCTCATGTTCAATTCGACTGTCTTAAAATGAAATTGAGACTAGAAGAAGGATATGAGGATATGCTTTCGTGTGGTGTATATCCAATGTGTAC]

[+] EMBL AK111009             [TTTCTTTTCCTCTTTCCACGAGGCGACGACGGCGACGATGAGCGCGGCGGCGGCGGCGGACGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGGCGAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCGCGGGAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCGAGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCTGCGGCATCACCTCCTTCTACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGGCACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACTGGGAGAAGTGGTTCTCCAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCCGCCGCCGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGGTAAGTTCCTCTCCCCCCCTTTCTGTTGTATTGTGAGCTTCTTTAGTATCAAAAATTATGTGATAATAAATGAAACACCAATCGATATGGAGATATGTGCAATATGTGTTAATTAACTACATATCTGTGTTGCAATTGGTGATTTGGATGTTTAATTTGCTGCTTTCTCATGTTCAATTCGACTGTCTTAAAATGAAATTGAGACTAGAAGAAGGATATGAGGATATGCTTTCGTGTGGTGTATATCCAATGTGTAC]




>consensus_8258#1
TTTCTTTTCCTCTTTCCACGAGGCGACGACGGCGACGATGAGCGCGGCGGCGGCGGCGGA
CGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGGC
GAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCGCGGGAACGCCCACTT
CGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCGAGTCCCTCACCACCTA
CACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCTGCGGCATCACCTCCTT
CTACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGG
CACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACTGGGAGAAGTGGTTCTC
CAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCCGCCGCCGCCGCCGCCGAGTAA
GACCTAGCTGCTCCGGTGGTGATGGTCGCTGGGTAAGTTCCTCTCCCCCCCTTTCTGTTG
TATTGTGAGCTTCTTTAGTATCAAAAATTATGTGATAATAAATGAAACACCAATCGATAT
GGAGATATGTGCAATATGTGTTAATTAACTACATATCTGTGTTGCAATTGGTGATTTGGA
TGTTTAATTTGCTGCTTTCTCATGTTCAATTCGACTGTCTTAAAATGAAATTGAGACTAG
AAGAAGGATATGAGGATATGCTTTCGTGTGGTGTATATCCAATGTGTAC

consensusID : consensus_8258#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 611
fasta sequence

                              [ACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGGCACCCTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGGCGAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCGCGGGAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCGAGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCTGCGGCATCACCTCCTTCTACACCCCGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATGCAACACGCGTTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCCTGTGGGAGCAAGGGCGCATTATAAAAGTGCCAGGTCACGTCCCTAGCTTTTGAAGGATCTTCAGGAAGCCATGGATACCGAGCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCAACTTTTAACTTGGTGTTTGTGGGTGTGGAACCCGTTGTCCAAATGCTAAATTGCCAGTTGTGAG]

[+] EMBL CA753909             [ACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGGCACCCTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGGCGAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCGCGGGAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCGAGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCTGCGGCATCACCTCCTTCTACACCCCGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATGCAACACGCGTTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCCTGTGGGAGCAAGGGCGCATTATAAAAGTGCCAGGTCACGTCCCTAGCTTTTGAAGGATCTTCAGGAAGCCATGGATACCGAGCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCAACTTTTAACTTGGTGTTTGTGGGTGTGGAACCCGTTGTCCAAATGCTAAATTGCCAGTTGTGAG]




>consensus_8258#2
ACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGCGTCGACCCGGGCA
CCCTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCGGGCGGAGGCGCCGG
CGAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCGCGGGAACGCCCACT
TCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCGAGTCCCTCACCACCT
ACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCTGCGGCATCACCTCCT
TCTACACCCCGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATG
CAACACGCGTTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACA
ATTCCTGTGGGAGCAAGGGCGCATTATAAAAGTGCCAGGTCACGTCCCTAGCTTTTGAAG
GATCTTCAGGAAGCCATGGATACCGAGCTCCACTTTCGGTTGTGGCAGTGACTCACTGGA
TCGAGCAACTTTTAACTTGGTGTTTGTGGGTGTGGAACCCGTTGTCCAAATGCTAAATTG
CCAGTTGTGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8258#0      CCNCCCACGCGTCCGCGGACGTNTTTTATCCACGA-GGCGACGACGNCGACGATGAGCGC 59
consensus_8258#2      --------ACACCC-----CGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCGCCTGC 47
consensus_8258#1      ---------TTTCT-----TTTCCTCTTTCCACGA-GGCGACGACGGCGACGATGAGCGC 45
                                  *           *    ** *** **** ** ** *  **  *   **

consensus_8258#0      GNCGGCGGCGGCGGACGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCG 119
consensus_8258#2      GTCGACC-CGGGCACCCTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCG 106
consensus_8258#1      GGCGGCGGCGGCGGACGTGGTGCACAGCGGCGGCTGCCACTGCGGGCGGGTGCGGTGGCG 105
                      * ** *  ***    * *******************************************

consensus_8258#0      GGCGGAGGCGCCGGCGAGCGTGNTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATNCG 179
consensus_8258#2      GGCGGAGGCGCCGGCGAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCG 166
consensus_8258#1      GGCGGAGGCGCCGGCGAGCGTGGTGGTGTGGATCTGCAACTGCTCCGACTGCGCCATGCG 165
                      ********************** ********************************** **

consensus_8258#0      CGNTGAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCG 239
consensus_8258#2      CGG-GAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCG 225
consensus_8258#1      CGG-GAACGCCCACTTCGTCGTCCCGGCCTCCAAGTTCACCCTCGCCGCCGGCGCCGGCG 224
                      **  ********************************************************

consensus_8258#0      AGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCT 299
consensus_8258#2      AGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCT 285
consensus_8258#1      AGTCCCTCACCACCTACACCTTCGGCACCCACACGGCGAAGCACACGTTCTGCAGGGTCT 284
                      ************************************************************

consensus_8258#0      GCGGCATCACCTCCTTCTACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCG 359
consensus_8258#2      GCGGCATCACCTCCTTCTACACCCCGC--------------------------------- 312
consensus_8258#1      GCGGCATCACCTCCTTCTACACCCCGCGGTCCAACCCCGACGGCGTCGCCGTCACCGCCG 344
                      ***************************                                 

consensus_8258#0      CCTGCGTCGACCCGGGCACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACT 419
consensus_8258#2      ------------------------------------------------------------
consensus_8258#1      CCTGCGTCGACCCGGGCACCCTGGCGCACGTCGAGTACAGGCACGCCGACGGGAGGAACT 404
                                                                                  

consensus_8258#0      GGGAGAAGTGGTTCTCCAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCCGCCGC 479
consensus_8258#2      ------------------------------------------------------------
consensus_8258#1      GGGAGAAGTGGTTCTCCAGGAGCGACATCTCCGACTTCTCCAAGCCCAAGGCGCCGCCGC 464
                                                                                  

consensus_8258#0      CGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATGCAACACGCG 539
consensus_8258#2      ---CGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGGATGCAACACGCG 369
consensus_8258#1      CGCCGCCGCCGAGTAAGACCTAGCTGCTCCGGTGGTGATGGTCGCTGG--GTAAGTTCCT 522
                         *********************************************  * **    * 

consensus_8258#0      TTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCCTGTG 599
consensus_8258#2      TTGGTGATCTTTCTTTCGGTGTCTGAAGTGGCTGGGCACATGGAATGAACAATTCCTGTG 429
consensus_8258#1      CTCCCCCCCTTTCTGTTGTATTGTGAGCTTCTTTAGTATCAAAAATTATGTGATAATAAA 582
                       *      ****** * *   * ***  *   *  * *     *** *     *  *   

consensus_8258#0      GGAGCAAGGGCGCATTATAAAAGTGCCAG-GTCACGTCCCTAGCTTTTGAAGGATCTTCA 658
consensus_8258#2      GGAGCAAGGGCGCATTATAAAAGTGCCAG-GTCACGTCCCTAGCTTTTGAAGGATCTTCA 488
consensus_8258#1      TGAAACACCAATCGATATGGAGATATGTGCAATATGTGTTAATTAACTACATATCTGTGT 642
                       **   *     *  ***  *  *    *    * **    *     *  *      *  

consensus_8258#0      GGAAGCCATGGATACCGA-GCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCA 717
consensus_8258#2      GGAAGCCATGGATACCGA-GCTCCACTTTCGGTTGTGGCAGTGACTCACTGGATCGAGCA 547
consensus_8258#1      TGCAATTGGTGATTTGGATGTTTAATTTGCTGCTTTCTCA-TGTTCAATTCGACTGTCTT 701
                       * *      ***   ** * *  * ** * * * *  ** **    * * **  *    

consensus_8258#0      ACTTTTAAACTTGGTGTTTGT----GGTTGTGGAAGCCGTTGTCCAAATGCTAAATTGCC 773
consensus_8258#2      ACTTTTAA-CTTGGTGTTTGT----GGGTGTGGAACCCGTTGTCCAAATGCTAAATTGCC 602
consensus_8258#1      AAAATGAA-ATTGAGACTAGAAGAAGGATATGAGGATATGCTTTCGTGTGGTGTATATCC 760
                      *   * **  ***    * *     ** * **          * *   ** *  **  **

consensus_8258#0      AAGTTGGAAGCCATATGCTTACAAATGATTGCCCATGGTTAAAACTAAAAAA 825
consensus_8258#2      A-GTTGTGAG------------------------------------------ 611
consensus_8258#1      AATGTGTAC------------------------------------------- 769
                      *   **