cluster # 8260

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Oryza sativa
cluster # 8260 cluster # 8260 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8260#0 length = 933 sequences # 3

consensus_8260#1 length = 395 sequences # 1
consensus_8260#2 length = 187 sequences # 1

consensusID : consensus_8260#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 933
fasta sequence

                              [TTACGGAAGTACCACCACCACCCTGCGCAGCGTT-CTCCTGTACCCTCACCGACGCGACACCACCCCGCCCCCCCTTATCCACGGAGGCGGCCTCCTCCTCCGCCCAGCGCCGCCGCTCTTGGTCCGCCGGACGCGCGGGTCACCTCCCACGGAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGCACATAGTCTAGCAATCAATCCTTCAAGGGCTGCTCGATGTCCGGTTACTTCGAGGGCGTCGAGTGCACCCTTGGGACTTGTCTCTTCGTTGGCCTTCAGCAGGGGACGTAAGGAAAGTGTTAAACTTTTCATCAATGTGGATAGATACACAAAGTATAGTACTCCTTTCTGTTATGCACCGCGAAACACCAGAATCACACCGCTTGCTACTGCATCATTTGGTGACACAGCTGACTCGTCAACTCCCATCTTTCCTAGAATCCATGTGAAGGATCCCTATCAGCGACTTGGAATCAGCAGGGAAGCATCTGAAGAAGAAATTCGAGCTGCCAGGAATTTTCTGATAAACAAGTATGCAGGGCATAAGCCAAGTGTTGATGCAATTGAGTCTGCCCATGACAGAATCATCATGCAGAGTTTCTCTGATAGAAAAAAACCAAAAGTGGATCTCAAGAAAAAGTATAGGGAACTTACTCAGTCACGTCCAGTCAAGGCTATTCAGGGAAGATTTCAAACACCTTCTAGTAAAGTGATTTGGCAGACAGCAATAACTTTTGTATTGCTTGGAGTGCTTACCCTTGTTTTCCCTACTGAAGAAGGGCCAACTCTCCAGGTGGCCATCTCTTGTGCAGCAAATATCTATTTCATTTATCAGAGGCTGAAAAGTGGATGGCGAACATTCTTTTATGGGTTCGGATCCTTCTTTGCTTCCTGGTTCCTTGCCACATTCT]

[+] EMBL AK058212             [TTACGGAAGTACCACCACCACCCTGCGCAGCGTT CTCCTGTACCCTCACCGACGCGACACCACCCCGCCCCCCCTTATCCACGGAGGCGGCCTCCTCCTCCGCCCAGCGCCGCCGCTCTTGGTCCGCCGGACGCGCGGGTCACCTCCCACGGAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGCACATAGTCTAGCAATCAATCCTTCAAGGGCTGCTCGATGTCCGGTTACTTCGAGGGCGTCGAGTGCACCCTTGGGACTTGTCTCTTCGTTGGCCTTCAGCAGGGGACGTAAGGAAAGTGTTAAACTTTTCATCAATGTGGATAGATACACAAAGTATAGTACTCCTTTCTGTTATGCACCGCGAAACGCCAGAATCACACCGCTTGCTACTGCATCATTTGGTGACACAGCTGACTCGTCAACTCCCATCTTTCCTAGAATCCATGTGAAGGATCCCTATCAGCGACTTGGAATCAGCAGGGAAGCATCTGAAGAAGAAATTCGAGCTGCCAGGAATTTTCTGATAAACAAGTATGCAGGGCATAAGCCAAGTGTTGATGCAATTGAGTCTGCCCATGACAGAATCATCATGCAGAGTTTCTCTGATAGAAAAAAACCAAAAGTGGATCTCAAGAAAAAGTATAGGGAACTTACTCAGTCACGTCCAGTCAAGGCTATTCAGGGAAGATTTCAAACACCTTCTAGTAAAGTGATTTGGCAGACAGCAATAACTTTTGTATTGCTTGGAGTGCTTACCCTTGTTTTCCCTACTGAAGAAGGGCCAACTCTCCAGGTGGCCATCTCTTGTGCAGCAAATATCTATTTCATTTATCAGAGGCTGAAAAGTGGATGGCGAACATTCTTTTATGGGTTCGGATCCTTCTTTGCTTCCTGGTTCCTTGCCACATTCT]
[+] EMBL C74018               [                              nGTTNCTCCTGTACCCTCACCGACGCGACACCACCCCGCCCCCCCTTATCCACGGAGGCGGCCTCCTCCTCCGCCCAGCGCCGCCGCTCTTGGTCCGCCGGACGCGCGGGTCACCTCCCACGGAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGCACATAGTCTAGCAATCAATCCTTCAAGGGCTGCTCGATGTCCGGTTACTTCGAGGGCGTCGAGTGCACCCTTGGGACTTGTCTCTTCGTTGGCCTTCAGCAGGGGACGTAAGGAAAGTGTTAAACTTTTCATCAATGTGGATAGATACACAAAGTATAGTACTCCTTTCTGTTATGCACCGCGAAACACCAGAATCACACGGCTTGCTANTGCATCATTTGGTGACAan                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK071625             [                                                        GACACCACCCCGCCCCCCCTTATCCACGGAGGCGGCCTCCTCCTCCGCCCAGCGCCGCCGCTCTTGGTCCGCCGGACGCGCGGGTCACCTCCCACGGAGGGGAAAGGCCTCAATTTAGGCTGTTCAACTATTCCTTGAGATGTTGGCACATAGTCTAGCAATCAATCCTTCAAGGGCTGCTCGATGTCCGGTTACTTCGAGGGCGTCGAGTGCACCCTTGGGACTTGTCTCTTCGTTGGCCTTCAGCAGGGGACGTAAGGAAAGTGTTAAACTTTTCATCAATGTGGATAGATACACAAAGTATAGTACTCCTTTCTGTTATGCACCGCGAAACACCAGAATCACACCGCTTGCTACTGCATCATTTGGTGACACAGCTGACTCGTCAACTCCCATCTTTCCTAGAATCCATGTGAAGGATCCCTATCAGCGACTTGGAATCAGCAGGGAAGCATCTGAAGAAGAAATTCGAGCTGCCAGGAATTTTCTGATAAACAAGTATGCAGGGCATAAGCCAAGTGTTGATGCAATTGAGTCTGCCCATGACAGAATCATCATGCAGAGTTTCTCTGATAGAAAAAAACCAAAAGTGGATCTCAAGAAAAAGTATAGGGAACTTACTCAGTCACGTCCAGTCAAGGCTATTCAGGGAAGATTTCAAACACCTTCTAGTAAAGTGATTTGGCAGACAGCAATAACTTTTGTATTGCTTGGAGTGCTTACCCTTGTTTTCCCTACTGAAGAAGGGCCAACTCTCCAGGTGGCCATCTCTTGTGCAGCAAATATCTATTTCATTTATCAGAGGCTGAAAAGTGGATGGCGAACATTCTTTTATGGGTTCGGATCCTTCTTTGCTTCCTGGTTCCTTGCCACATTCT]




>consensus_8260#0
TTACGGAAGTACCACCACCACCCTGCGCAGCGTTCTCCTGTACCCTCACCGACGCGACAC
CACCCCGCCCCCCCTTATCCACGGAGGCGGCCTCCTCCTCCGCCCAGCGCCGCCGCTCTT
GGTCCGCCGGACGCGCGGGTCACCTCCCACGGAGGGGAAAGGCCTCAATTTAGGCTGTTC
AACTATTCCTTGAGATGTTGGCACATAGTCTAGCAATCAATCCTTCAAGGGCTGCTCGAT
GTCCGGTTACTTCGAGGGCGTCGAGTGCACCCTTGGGACTTGTCTCTTCGTTGGCCTTCA
GCAGGGGACGTAAGGAAAGTGTTAAACTTTTCATCAATGTGGATAGATACACAAAGTATA
GTACTCCTTTCTGTTATGCACCGCGAAACACCAGAATCACACCGCTTGCTACTGCATCAT
TTGGTGACACAGCTGACTCGTCAACTCCCATCTTTCCTAGAATCCATGTGAAGGATCCCT
ATCAGCGACTTGGAATCAGCAGGGAAGCATCTGAAGAAGAAATTCGAGCTGCCAGGAATT
TTCTGATAAACAAGTATGCAGGGCATAAGCCAAGTGTTGATGCAATTGAGTCTGCCCATG
ACAGAATCATCATGCAGAGTTTCTCTGATAGAAAAAAACCAAAAGTGGATCTCAAGAAAA
AGTATAGGGAACTTACTCAGTCACGTCCAGTCAAGGCTATTCAGGGAAGATTTCAAACAC
CTTCTAGTAAAGTGATTTGGCAGACAGCAATAACTTTTGTATTGCTTGGAGTGCTTACCC
TTGTTTTCCCTACTGAAGAAGGGCCAACTCTCCAGGTGGCCATCTCTTGTGCAGCAAATA
TCTATTTCATTTATCAGAGGCTGAAAAGTGGATGGCGAACATTCTTTTATGGGTTCGGAT
CCTTCTTTGCTTCCTGGTTCCTTGCCACATTCT

consensusID : consensus_8260#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [TGGCCCTTCAGCAGGGGGACTTAAGGGAAAAGTGTTAAACTTTTCAATCAAATGTGGATAGATACNCAAAGTATAGTACTCCTTTNTGTTATNCACCGCGAAACACCAGAATCACACCGCTTGCTACTGCATCATTTGGTGACACAGCTGACTCGTCAACTCCCATCTTTCCTAGAATCCATGTGAAGGATCCCTATCAGCGACTTGGAATCAGCAGGGAAGCATCTGAAGAAGAAATTCGAGCTGCCAGGAATTTTCTGATAAACAAGTATGCAGGGCATAAGCCAAGTGTTGATGCAATTGAGTCTGCCCATGACAGAATCATCATGCAGAGTTTCTCTGATAGAAAAAAACCAAAAGTGGATCTCAAGAAAAAAAAAAAANAAAAAAAAAAA]

[+] EMBL AU029329             [TGGCCCTTCAGCAGGGGGACTTAAGGGAAAAGTGTTAAACTTTTCAATCAAATGTGGATAGATACNCAAAGTATAGTACTCCTTTNTGTTATNCACCGCGAAACACCAGAATCACACCGCTTGCTACTGCATCATTTGGTGACACAGCTGACTCGTCAACTCCCATCTTTCCTAGAATCCATGTGAAGGATCCCTATCAGCGACTTGGAATCAGCAGGGAAGCATCTGAAGAAGAAATTCGAGCTGCCAGGAATTTTCTGATAAACAAGTATGCAGGGCATAAGCCAAGTGTTGATGCAATTGAGTCTGCCCATGACAGAATCATCATGCAGAGTTTCTCTGATAGAAAAAAACCAAAAGTGGATCTCAAGAAAAAAAAAAAANAAAAAAAAAAA]




>consensus_8260#1
TGGCCCTTCAGCAGGGGGACTTAAGGGAAAAGTGTTAAACTTTTCAATCAAATGTGGATA
GATACNCAAAGTATAGTACTCCTTTNTGTTATNCACCGCGAAACACCAGAATCACACCGC
TTGCTACTGCATCATTTGGTGACACAGCTGACTCGTCAACTCCCATCTTTCCTAGAATCC
ATGTGAAGGATCCCTATCAGCGACTTGGAATCAGCAGGGAAGCATCTGAAGAAGAAATTC
GAGCTGCCAGGAATTTTCTGATAAACAAGTATGCAGGGCATAAGCCAAGTGTTGATGCAA
TTGAGTCTGCCCATGACAGAATCATCATGCAGAGTTTCTCTGATAGAAAAAAACCAAAAG
TGGATCTCAAGAAAAAAAAAAAANAAAAAAAAAAA

consensusID : consensus_8260#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 187
fasta sequence

                              [GGAAATTACGGAAGTACCACCACCACCCTGCGCANGTGTCTCCTGTACCCTCACCGACGCGACACCACCCNGTCCCCCCTTATCCACGGAGGCGGCCTACTCCTTCGCCCAGNGCCGCCGATCTTGGTCCGCACGGACGNGNGGGTTACNTTCCACGGAGGGGNAAGGNCTCAATTTAGGCTGTTCA]

[+] EMBL OSS12555A            [GGAAATTACGGAAGTACCACCACCACCCTGCGCANGTGTCTCCTGTACCCTCACCGACGCGACACCACCCNGTCCCCCCTTATCCACGGAGGCGGCCTACTCCTTCGCCCAGNGCCGCCGATCTTGGTCCGCACGGACGNGNGGGTTACNTTCCACGGAGGGGNAAGGNCTCAATTTAGGCTGTTCA]




>consensus_8260#2
GGAAATTACGGAAGTACCACCACCACCCTGCGCANGTGTCTCCTGTACCCTCACCGACGC
GACACCACCCNGTCCCCCCTTATCCACGGAGGCGGCCTACTCCTTCGCCCAGNGCCGCCG
ATCTTGGTCCGCACGGACGNGNGGGTTACNTTCCACGGAGGGGNAAGGNCTCAATTTAGG
CTGTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8260#0      TTACGGAAGTACCACCACCACCCTGCGCAGCGTTCTCCTGTACCCTCACCGACGCGACAC 60
consensus_8260#1      ------------------------------------------------------------
consensus_8260#2      ------------------------------------------------------------
                                                                                  

consensus_8260#0      CACCCCGCCCCCCCTTATCCACGGAGGCGGCCTCCTCCTCCGCCCAGCGCCGCCGCTCTT 120
consensus_8260#1      ------------------------------------------------------------
consensus_8260#2      ------------------------------------------------------------
                                                                                  

consensus_8260#0      GGTCCGCCGGACGCGCGGGTCACCTCCCACGGAGGGGAAAGGCCTCAATTTAGGCTGTTC 180
consensus_8260#1      ------------------------------------------------------------
consensus_8260#2      ------------------------------------------------------------
                                                                                  

consensus_8260#0      AACTATTCCTTGAGATGTTGGCACATAGTCTAGCAATCAATCCTTCAAGGGCTGCTCGAT 240
consensus_8260#1      ------------------------------------------------------------
consensus_8260#2      ------------------------------------------------------------
                                                                                  

consensus_8260#0      GTCCGGTTACTTCGAGGGCGTCGAGTGCACCCTTGGGACTTGTCTCTTCGTTGGCCTTCA 300
consensus_8260#1      --------------------------------------------------TGGCCCTTCA 10
consensus_8260#2      ------------------------------------------------------------
                                                                                  

consensus_8260#0      GCAGGGG-ACGTAAGG--AAAGTGTTAAACTTTTCATC--AATGTGGATAGATACACAAA 355
consensus_8260#1      GCAGGGGGACTTAAGGGAAAAGTGTTAAACTTTTCAATCAAATGTGGATAGATACNCAAA 70
consensus_8260#2      --------------------------------------GGAAATTACGGAAGTACCACCA 22
                                                              **  *    *  ***    *

consensus_8260#0      GTATAGTACTCCTTTCTGTTATGCACCGCGAAACACCAGAATCACACCGCTTGCTACTGC 415
consensus_8260#1      GTATAGTACTCCTTTNTGTTATNCACCGCGAAACACCAGAATCACACCGCTTGCTACTGC 130
consensus_8260#2      CCACCCTGCGCANGTGTCTCCTGTACCCT----CACCGACGCGACACCACCCNGTCCCCC 78
                        *   * * *   * * *  *  ***      ****      ***** *    * *  *

consensus_8260#0      ATCATTTGGTGACACAGCTGACTCGTCAACTCCCATCTTTCCTAGAATCCATGTGAAGGA 475
consensus_8260#1      ATCATTTGGTGACACAGCTGACTCGTCAACTCCCATCTTTCCTAGAATCCATGTGAAGGA 190
consensus_8260#2      CTTATCCACGGAGGCGGCCTACTCCTT--CGCCCAGNGCCGCCGATCTTGGTCCGCACGG 136
                       * **     **  * **  **** *   * ****      *     *   *  * * * 

consensus_8260#0      TCCCTATCAGCGACTTGGAATCAGCAGGGAAGCATCTGAAGAAGAAATTCGAGCTGCCAG 535
consensus_8260#1      TCCCTATCAGCGACTTGGAATCAGCAGGGAAGCATCTGAAGAAGAAATTCGAGCTGCCAG 250
consensus_8260#2      -----ACGNGNGGGTTACNTTCCACGGAGGGGNA----AGGNCTCAATTTAGGCTGTTCA 187
                           *   * *  **    **  * * *  * *    * *    ****   ****    

consensus_8260#0      GAATTTTCTGATAAACAAGTATGCAGGGCATAAGCCAAGTGTTGATGCAATTGAGTCTGC 595
consensus_8260#1      GAATTTTCTGATAAACAAGTATGCAGGGCATAAGCCAAGTGTTGATGCAATTGAGTCTGC 310
consensus_8260#2      ------------------------------------------------------------
                                                                                  

consensus_8260#0      CCATGACAGAATCATCATGCAGAGTTTCTCTGATAGAAAAAAACCAAAAGTGGATCTCAA 655
consensus_8260#1      CCATGACAGAATCATCATGCAGAGTTTCTCTGATAGAAAAAAACCAAAAGTGGATCTCAA 370
consensus_8260#2      ------------------------------------------------------------
                                                                                  

consensus_8260#0      GAAAAAGTATAGGGAACTTACTCAGTCACGTCCAGTCAAGGCTATTCAGGGAAGATTTCA 715
consensus_8260#1      GAAAAAAAAAAAANAAAAAAAAAAA----------------------------------- 395
consensus_8260#2      ------------------------------------------------------------
                                                                                  

consensus_8260#0      AACACCTTCTAGTAAAGTGATTTGGCAGACAGCAATAACTTTTGTATTGCTTGGAGTGCT 775
consensus_8260#1      ------------------------------------------------------------
consensus_8260#2      ------------------------------------------------------------
                                                                                  

consensus_8260#0      TACCCTTGTTTTCCCTACTGAAGAAGGGCCAACTCTCCAGGTGGCCATCTCTTGTGCAGC 835
consensus_8260#1      ------------------------------------------------------------
consensus_8260#2      ------------------------------------------------------------
                                                                                  

consensus_8260#0      AAATATCTATTTCATTTATCAGAGGCTGAAAAGTGGATGGCGAACATTCTTTTATGGGTT 895
consensus_8260#1      ------------------------------------------------------------
consensus_8260#2      ------------------------------------------------------------
                                                                                  

consensus_8260#0      CGGATCCTTCTTTGCTTCCTGGTTCCTTGCCACATTCT 933
consensus_8260#1      --------------------------------------
consensus_8260#2      --------------------------------------