cluster # 8265

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Oryza sativa
cluster # 8265 cluster # 8265 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_8265#0 length = 704 sequences # 4

consensus_8265#1 length = 249 sequences # 1

consensusID : consensus_8265#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 704
fasta sequence

                              [TTCCTTTTTGAAGGAAAACTGATCATCGCCATCTCGGATCATCCCCTAT--ACGAAACGCTGAGCTTTAAGTGTACAACACAAACATATACACTATAAAAATTGCGCACAAAAACGTATACACAATCGCGCGCGCGCGCGCGCATATGTACGTACGTACAGTGTACGTTTCTGTACGTACATTACTTGCACGTATCGTTATACTTCGACGCAGCACGCGGCCTGCACGTACCCCGCGAACTCCGGCGGCGCCGCGGCGCGCGCCCACGACTGCGCCGCGCCGTTCTTGTCGCCGCCCTCCCCGGTGGTGAGCAGGTACACCGCCTGCTCGCCGCCGTGGCTCCCCGCGCCGATGGCGACCACGCGGCCGTCCCCGATGGCGGCGAGGGCCGTCACCGCGCGGCCGTCCTCGGGCAGGCTCGCCACCGCCCGCCACGCGGCGCCGCCGTTGTTCGTGGCGTCGCGCGCCGCGAGGTGGCCGTCGCGGAGCATGTACATCGTCGCGCCCGCCGCGGGCGCCGGCGCGGCGCAGCACGTCCTCGGGCACGTCCCCTCGTCGAGGACACGCTCCTGCACGGGGCCCCACGCCCACGCGGCCGGGTCGAACGCCTCGGCGGAGCCGGCGAACCGGCCCTGCGCCTCCGTCGGGTACCCGCCGACGGCGACGAACCTGCCGCCGACGCAGACGCCCCTGGCCTCGTCCCGCT]

[+] EMBL CB650284             [TTCCTTTTTGAAGGAAAACTGATCATCGCCATCTCGGATCATCCCCTAT  ACGAAACGCTGAGCTTTAAGTGTACAACACAAACATATACACTATAAAAATTGCGCACAAAAACGTATACACAATCGCGCGCGCGCGCGCGCATATGTACGTACGTACAGTGTACGTTTCTGTACGTACATTACTTGCACGTATCGTTATACTTCGACGCAGCACGCGGCCTGCACGTACCCCGCGAACTCCGGCGGCGCCGCGGCGCGCGCCCACGACTGCGCCGCGCCGTTCTTGTCGCCGCCCTCCCCGGTGGTGAGCAGGTACACCGCCTGCTCGCCGCCGTGGCTCCCCGCGCCGATGGCGACCACGCGGCCGTCCCCGATGGCGGCGAGGGCCGTCACCGCGCGGCCGTCCTCGGGCAGGCTCGCCACCGCCCGCCACGCGGCGCCGCCGTTGTTCGTGGCGTCGCGCGCCGCGAGGTGGCCGTCGCGGAGCATGTACATCGTCGCGCCCGCCGCGGGCGCCGGCGCGGCGCAGCACGTCCTCGGGCACGTCCCCTCGTCGAGGACACGCTCCTGCACGGGGCCCCACGCCCACGCGGCCGGGTCGAACGCCTCGGCGGAGCCGGCGAACCGGCCCTGCGCCTCCGTCGGGTACCCGCCGACGGCGACGAACCTGCCGCCGACGCAGACGCCCCTGGCCTCGTCCCGCT]
[+] EMBL CB650483             [                        ATCTCCATCTCGGATC  CCCCTATAAAGGAAACGCTGAGCTTTAAGTGTACAACACAAACATATACACTATAAAAATTGCGCACAAAAACGTATACACAATCGCGCGCGCGCGCGCGCATATGTACGTACGTACAGTGTACGTTTCTGTACGTACATTACTTGCACGTATCGTTATACTTCGACGCAGCACGCGGCCTGCACGTACCCCGCGAACTCCGGCGGCGCCGCGGCGCGCGCCCACGACTGCGCCGCGCCGTTCTTGTCGCCGCCCTCCCCGGTGGTGAGCAGGTACACCGCCTGCTCGCCGCCGTGGCTCCCCGCGCCGATGGCGACCACGCGGCCGTCCCCGATGGCGGCGAGGGCCGTCACCGCGCGGCCGTCCTCGGGCAGGCTCGCCACCGCCCGCCACGCGGCGCCGCCGTTGTTCGTGGCGTCGCGCGCCGCGAGGTGGCCGTCGCGGAGCATGTACATCGTCGCGC                                                                                                                                                                                                         ]
[-] EMBL CB680310             [                                 TCGGATCATCGTATAT  ACGAAACGCTGAGCTTTAAGTGTACAACACAAACATATACACTATAAAAATTGCGCACAAAAACGTATACACAATCGCGCGCGCGCGCGCGCATATGTACGTACGTACAGTGTACGTTTCTGTACGTACATTACTTGCACGTATCGTTATACTTGGACGCAGCACGCGGCCTGCACGTACCCCGCGAACTCAGGCGGCGCCGCGGCGCGCGCCCACGACTGCGCCGCGCCGTTCTTGTAGCCGCCCTCCCCGGTGGTGAGCAGGTACACCGCCTGCTCGCCGCCGTGGCTCCCCGCGCGGATGGCGACCACGCGACCGTCCCCGATGGCGGAGAGGGCCGTCACCGCGCGGCCGTCCTCGGGCAGGAAAGGCACCGC                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB650241             [                                                             GAGCTTTAAGTGTACAACACAAACATATACACTATAAAAATTGCGCACAAAAACGTATACACAATCGCGCGCGCGCGCGCGCATATGTACGTACGTACAGTGTACGTTTCTGTACGTACATTACTTGCACGTATCGTTATACTTCGACGCAGCACGCGGCCTGCACGTACCCCGCAAACTCCGGCGGCGCCGCGGCGCGCGCCCACGACTGCGCCGCGCCGTTCTTGTCGCCGCCCTCCCCGGTGGTGAGCAGGTACACCGCCTGCTCGCCGCCGTGGCTCCCCGCGCCGATGGCGACCACGCGGCCGTCCCCGATGGCGGCGAGGGCCGTCACCGCGCGGCCGTCCTCGGGCAGGCTCGCCACCGCCCGCCACGCGGCGCCGCCGTTGTTCGTGGCGTCGCGCGCCGCGAGGTGGCCGTCGCGGAGCATGTACATCGTCGCGCCCGCCGCGGGCGCCGGCGCGGCGCAGCACGTCCTCGGGCACGTCCCCTCGTCGAGGACACGCTCCTGCACGGGGCCCCACGCCCACGCGGCCGGGTCGAACGCCTCGGCGGAGCCGGCGAACCGGCCCTGCGCCTCCGTCGGGTACCCGCCGACGGCGAAGAACCTGCCGCCGACGCAGACGCCCCTGGCCTCGT      ]




>consensus_8265#0
TTCCTTTTTGAAGGAAAACTGATCATCGCCATCTCGGATCATCCCCTATACGAAACGCTG
AGCTTTAAGTGTACAACACAAACATATACACTATAAAAATTGCGCACAAAAACGTATACA
CAATCGCGCGCGCGCGCGCGCATATGTACGTACGTACAGTGTACGTTTCTGTACGTACAT
TACTTGCACGTATCGTTATACTTCGACGCAGCACGCGGCCTGCACGTACCCCGCGAACTC
CGGCGGCGCCGCGGCGCGCGCCCACGACTGCGCCGCGCCGTTCTTGTCGCCGCCCTCCCC
GGTGGTGAGCAGGTACACCGCCTGCTCGCCGCCGTGGCTCCCCGCGCCGATGGCGACCAC
GCGGCCGTCCCCGATGGCGGCGAGGGCCGTCACCGCGCGGCCGTCCTCGGGCAGGCTCGC
CACCGCCCGCCACGCGGCGCCGCCGTTGTTCGTGGCGTCGCGCGCCGCGAGGTGGCCGTC
GCGGAGCATGTACATCGTCGCGCCCGCCGCGGGCGCCGGCGCGGCGCAGCACGTCCTCGG
GCACGTCCCCTCGTCGAGGACACGCTCCTGCACGGGGCCCCACGCCCACGCGGCCGGGTC
GAACGCCTCGGCGGAGCCGGCGAACCGGCCCTGCGCCTCCGTCGGGTACCCGCCGACGGC
GACGAACCTGCCGCCGACGCAGACGCCCCTGGCCTCGTCCCGCT

consensusID : consensus_8265#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 249
fasta sequence

                              [TTTTTTTTTTAGACTTCAATGAGCTTATCTGCTTATGTGAAGTAAACAAACAAAACAGAGCTTATGCAAAACTGATCATCTCCATCTCGGATCATCGTATATACGAAACGCTGAGCTTTAAGTGTACAACACAAACACATACACTATAACAATGGCGCACAAAAACGTATACACAATCGCGCGCGCGCGCGCATATGTACGTACGTACAGGTGTACGTCTCTGTACGTACATTACTTGCACGTATCGTT]

[-] EMBL BI812916             [TTTTTTTTTTAGACTTCAATGAGCTTATCTGCTTATGTGAAGTAAACAAACAAAACAGAGCTTATGCAAAACTGATCATCTCCATCTCGGATCATCGTATATACGAAACGCTGAGCTTTAAGTGTACAACACAAACACATACACTATAACAATGGCGCACAAAAACGTATACACAATCGCGCGCGCGCGCGCATATGTACGTACGTACAGGTGTACGTCTCTGTACGTACATTACTTGCACGTATCGTT]




>consensus_8265#1
TTTTTTTTTTAGACTTCAATGAGCTTATCTGCTTATGTGAAGTAAACAAACAAAACAGAG
CTTATGCAAAACTGATCATCTCCATCTCGGATCATCGTATATACGAAACGCTGAGCTTTA
AGTGTACAACACAAACACATACACTATAACAATGGCGCACAAAAACGTATACACAATCGC
GCGCGCGCGCGCATATGTACGTACGTACAGGTGTACGTCTCTGTACGTACATTACTTGCA
CGTATCGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_8265#0      -----------------------------------------------------TTCCTTT 7
consensus_8265#1      TTTTTTTTTTAGACTTCAATGAGCTTATCTGCTTATGTGAAGTAAACAAACAAAACAGAG 60
                                                                             *    

consensus_8265#0      TTGAAGGAAAACTGATCATCGCCATCTCGGATCATCCCCTATACGAAACGCTGAGCTTTA 67
consensus_8265#1      CTTATGCAAAACTGATCATCTCCATCTCGGATCATCGTATATACGAAACGCTGAGCTTTA 120
                       * * * ************* ***************   *********************

consensus_8265#0      AGTGTACAACACAAACATATACACTATAAAAATTGCGCACAAAAACGTATACACAATCGC 127
consensus_8265#1      AGTGTACAACACAAACACATACACTATAACAATGGCGCACAAAAACGTATACACAATCGC 180
                      ***************** *********** *** **************************

consensus_8265#0      GCGCGCGCGCGCGCATATGTACGTACGTACAG-TGTACGTTTCTGTACGTACATTACTTG 186
consensus_8265#1      GCGCGCGCGCG--CATATGTACGTACGTACAGGTGTACGTCTCTGTACGTACATTACTTG 238
                      ***********  ******************* ******* *******************

consensus_8265#0      CACGTATCGTTATACTTCGACGCAGCACGCGGCCTGCACGTACCCCGCGAACTCCGGCGG 246
consensus_8265#1      CACGTATCGTT------------------------------------------------- 249
                      ***********                                                 

consensus_8265#0      CGCCGCGGCGCGCGCCCACGACTGCGCCGCGCCGTTCTTGTCGCCGCCCTCCCCGGTGGT 306
consensus_8265#1      ------------------------------------------------------------
                                                                                  

consensus_8265#0      GAGCAGGTACACCGCCTGCTCGCCGCCGTGGCTCCCCGCGCCGATGGCGACCACGCGGCC 366
consensus_8265#1      ------------------------------------------------------------
                                                                                  

consensus_8265#0      GTCCCCGATGGCGGCGAGGGCCGTCACCGCGCGGCCGTCCTCGGGCAGGCTCGCCACCGC 426
consensus_8265#1      ------------------------------------------------------------
                                                                                  

consensus_8265#0      CCGCCACGCGGCGCCGCCGTTGTTCGTGGCGTCGCGCGCCGCGAGGTGGCCGTCGCGGAG 486
consensus_8265#1      ------------------------------------------------------------
                                                                                  

consensus_8265#0      CATGTACATCGTCGCGCCCGCCGCGGGCGCCGGCGCGGCGCAGCACGTCCTCGGGCACGT 546
consensus_8265#1      ------------------------------------------------------------
                                                                                  

consensus_8265#0      CCCCTCGTCGAGGACACGCTCCTGCACGGGGCCCCACGCCCACGCGGCCGGGTCGAACGC 606
consensus_8265#1      ------------------------------------------------------------
                                                                                  

consensus_8265#0      CTCGGCGGAGCCGGCGAACCGGCCCTGCGCCTCCGTCGGGTACCCGCCGACGGCGACGAA 666
consensus_8265#1      ------------------------------------------------------------
                                                                                  

consensus_8265#0      CCTGCCGCCGACGCAGACGCCCCTGGCCTCGTCCCGCT 704
consensus_8265#1      --------------------------------------